1KG3A

Crystal structure of the core fragment of muty from e.coli at 1.55a resolution
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
224
structure length
224
Chain Sequence
b'MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords A/G-specific adenine glycosylase
molecule tags Hydrolase
source organism Escherichia coli
publication title Analysis of the E.coli MutY DNA glycosylase structure and function by site-directed mutagenesis
rcsb
total genus 81
structure length 224
sequence length 224
ec nomenclature ec 3.2.2.31: Adenine glycosylase.
pdb deposition date 2001-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00633 HHH Helix-hairpin-helix motif
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
A PF10576 EndIII_4Fe-2S Iron-sulfur binding domain of endonuclease III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1kg3A02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1kg3A01
4EW4A 4B22A 2JHJA 1WEIA 2NOIA 4EA4A 5CHZA 1NGNA 3OGDA 1YQRA 1XG7A 3FHGA 1KO9A 5AN4A 3FSPA 3OH9A 2XHIA 1P59A 3F0ZA 1PU8A 4OFEA 3OH6A 1KG7A 3N5NX 1LWWA 4E9GA 1YQMA 1PVSA 1ORPA 3CWSA 2OFKA 3I0WA 4E9HA 3CWUA 3CWAA 1ORNA 2JHNA 1M3QA 4YPHA 1LWYA 5DPKA 2OFIA 2NOLA 1KG5A 5KN9A 1KQJA 1XQPA 3G0QA 1NKUA 2YG9A 3KNTA 1KG6A 3KTUA 2NOEA 1KEAA 1WEGA 2NOBA 3I0XA 4UOBA 1N3CA 3FHFA 4EW0A 1XQOA 1VRLA 4OFHA 1RRQA 3D4VA 4EJYA 2ABKA 2YG8A 2I5WA 4EVVA 1MPGA 1FN7A 1P7MA 1PU6A 3N0UA 5KN8A 1N39A 3CWTA 1KG3A 1LWVA 1DIZA 1LMZA 1PU7A 3CW7A 4B21A 1KG4A 1MUYA 4B24A 1YQLA 4DK9A 4AI5A 4UNFA 4OFAA 3IHOA 3IH7A 4YPRA 2NOZA 1MUDA 1MUNA 3S6IA 2JG6A 2NOFA 4AIAA 1RRSA 2NOHA 4HSBA 4E9EA 1HU0A 2H56A 4B23A 3F10A 1N3AA 1EBMA 4EA5A 4PIIA 4YOQA 3CVSA 4AI4A 1KG2A 3CVTA 4EJZA 1WEFA 1M3HA 4E9FA 1YQKA
chains in the Genus database with same CATH superfamily
2JPSA 3OYMA 3OYDA 4EW4A 4B22A 2JHJA 1WEIA 2NOIA 4IKFA 4EA4A 5CHZA 1NGNA 3OGDA 1YQRA 3OYAA 1XG7A 3FHGA 1KO9A 5AN4A 3FSPA 4E7LA 3OH9A 2XHIA 1P59A 4E7JA 3F0ZA 4BE0A 3L2UA 1PU8A 4OFEA 3OS1A 3OH6A 1KG7A 3N5NX 1LWWA 4E9GA 1YQMA 4ZTJA 5FRNA 4NZGA 1PVSA 1ORPA 3CWSA 2OFKA 4E9FA 3I0WA 4E9HA 3OYNA 3CWUA 3OYEA 3CWAA 3OYLA 1M3HA 2JHNA 1ORNA 1M3QA 4YPHA 1U84A 3S3NA 2W04A 4BDYA 4E7IA 5DPKA 3S3OA 1LWYA 2OFIA 2NOLA 1KG5A 5KN9A 4E7HA 1KQJA 1XQPA 3G0QA 3OYBA 1NKUA 2YG9A 3R2XC 3KNTA 2W03A 1KG6A 3KTUA 2NOEA 1KEAA 3VW4A 1WEGA 3OYJA 2NOBA 3I0XA 4UOBA 1N3CA 3FHFA 4EW0A 1XQOA 3OYIA 3LCNA 1VRLA 4OFHA 1RRQA 3D4VA 2V75A 4EJYA 5FRMA 2ABKA 2YG8A 3L2QA 3OYHA 2I5WA 4EVVA 4BACA 3L2VA 1MPGA 1FN7A 1P7MA 1PU6A 3N0UA 5FROA 5KN8A 1N39A 3CWTA 1KG3A 1LWVA 3OYFA 3OYCA 4BE2A 1DIZA 1LMZA 1PU7A 3CW7A 4B21A 1KG4A 1MUYA 3OY9A 3NNQA 4B24A 1YQLA 4DK9A 4UNFA 3L2WA 4OFAA 3IHOA 3IH7A 3OS0A 3OS2A 4YPRA 3S3MA 2NOZA 1MUDA 1MUNA 3S6IA 2JG6A 2NOFA 4AIAA 1RRSA 3OYKA 4ZTFA 2NOHA 4HSBA 4BE1A 4E9EA 1HU0A 2H56A 4B23A 4E7KA 3F10A 1N3AA 1EBMA 4EA5A 4BDZA 4PIIA 4YOQA 3CVSA 4AI4A 1KG2A 3CVTA 4EJZA 1WEFA 3OYGA 3L2RA 4AI5A 1YQKA
chains in the Genus database with same CATH topology
4EW4A 4B22A 2JHJA 1WEIA 2NOIA 4EA4A 5CHZA 1NGNA 3OGDA 1YQRA 1XG7A 3FHGA 1KO9A 5AN4A 3FSPA 3OH9A 2XHIA 1P59A 3F0ZA 1PU8A 4OFEA 3OH6A 1KG7A 3N5NX 1LWWA 4E9GA 1YQMA 1PVSA 1ORPA 3CWSA 2OFKA 3I0WA 4E9HA 3CWUA 3CWAA 1ORNA 2JHNA 1M3QA 4YPHA 1LWYA 5DPKA 2OFIA 2NOLA 1KG5A 5KN9A 1KQJA 1XQPA 3G0QA 1NKUA 2YG9A 3KNTA 1KG6A 3KTUA 2NOEA 1KEAA 1WEGA 2NOBA 3I0XA 4UOBA 1N3CA 3FHFA 4EW0A 1XQOA 1VRLA 4OFHA 1RRQA 3D4VA 4EJYA 2ABKA 2YG8A 2I5WA 4EVVA 1MPGA 1FN7A 1P7MA 1PU6A 3N0UA 5KN8A 1N39A 3CWTA 1KG3A 1LWVA 1DIZA 1LMZA 1PU7A 3CW7A 4B21A 1KG4A 1MUYA 4B24A 1YQLA 4DK9A 4AI5A 4UNFA 4OFAA 3IHOA 3IH7A 4YPRA 2NOZA 1MUDA 1MUNA 3S6IA 2JG6A 2NOFA 4AIAA 1RRSA 2NOHA 4HSBA 4E9EA 1HU0A 2H56A 4B23A 3F10A 1N3AA 1EBMA 4EA5A 4PIIA 4YOQA 3CVSA 4AI4A 1KG2A 3CVTA 4EJZA 1WEFA 1M3HA 4E9FA 1YQKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EW4 A;  4B22 A;  2JHJ A;  1WEI A;  2NOI A;  4EA4 A;  5CHZ A;  1NGN A;  3OGD A;  1YQR A;  1XG7 A;  3FHG A;  1KO9 A;  5AN4 A;  3FSP A;  3OH9 A;  2XHI A;  1P59 A;  3F0Z A;  1PU8 A;  4OFE A;  3OH6 A;  1KG7 A;  3N5N X;  1LWW A;  4E9G A;  1YQM A;  1PVS A;  1ORP A;  3CWS A;  2OFK A;  3I0W A;  4E9H A;  3CWU A;  3CWA A;  1ORN A;  2JHN A;  1M3Q A;  4YPH A;  1LWY A;  5DPK A;  2OFI A;  2NOL A;  1KG5 A;  5KN9 A;  1KQJ A;  1XQP A;  3G0Q A;  1NKU A;  2YG9 A;  3KNT A;  1KG6 A;  3KTU A;  2NOE A;  1KEA A;  1WEG A;  2NOB A;  3I0X A;  4UOB A;  1N3C A;  3FHF A;  4EW0 A;  1XQO A;  1VRL A;  4OFH A;  1RRQ A;  3D4V A;  4EJY A;  2ABK A;  2YG8 A;  2I5W A;  4EVV A;  1MPG A;  1FN7 A;  1P7M A;  1PU6 A;  3N0U A;  5KN8 A;  1N39 A;  3CWT A;  1KG3 A;  1LWV A;  1DIZ A;  1LMZ A;  1PU7 A;  3CW7 A;  4B21 A;  1KG4 A;  1MUY A;  4B24 A;  1YQL A;  4DK9 A;  4AI5 A;  4UNF A;  4OFA A;  3IHO A;  3IH7 A;  4YPR A;  2NOZ A;  1MUD A;  1MUN A;  3S6I A;  2JG6 A;  2NOF A;  4AIA A;  1RRS A;  2NOH A;  4HSB A;  4E9E A;  1HU0 A;  2H56 A;  4B23 A;  3F10 A;  1N3A A;  1EBM A;  4EA5 A;  4PII A;  4YOQ A;  3CVS A;  4AI4 A;  1KG2 A;  3CVT A;  4EJZ A;  1WEF A;  1M3H A;  4E9F A;  1YQK A; 
#chains in the Genus database with same CATH topology
 2JPS A;  3OYM A;  3OYD A;  4EW4 A;  4B22 A;  2JHJ A;  1WEI A;  2NOI A;  4IKF A;  4EA4 A;  5CHZ A;  1NGN A;  3OGD A;  1YQR A;  3OYA A;  1XG7 A;  3FHG A;  1KO9 A;  5AN4 A;  3FSP A;  4E7L A;  3OH9 A;  2XHI A;  1P59 A;  4E7J A;  3F0Z A;  4BE0 A;  3L2U A;  1PU8 A;  4OFE A;  3OS1 A;  3OH6 A;  1KG7 A;  3N5N X;  1LWW A;  4E9G A;  1YQM A;  4ZTJ A;  5FRN A;  4NZG A;  1PVS A;  1ORP A;  3CWS A;  2OFK A;  4E9F A;  3I0W A;  4E9H A;  3OYN A;  3CWU A;  3OYE A;  3CWA A;  3OYL A;  1M3H A;  2JHN A;  1ORN A;  1M3Q A;  4YPH A;  1U84 A;  3S3N A;  2W04 A;  4BDY A;  4E7I A;  5DPK A;  3S3O A;  1LWY A;  2OFI A;  2NOL A;  1KG5 A;  5KN9 A;  4E7H A;  1KQJ A;  1XQP A;  3G0Q A;  3OYB A;  1NKU A;  2YG9 A;  3R2X C;  3KNT A;  2W03 A;  1KG6 A;  3KTU A;  2NOE A;  1KEA A;  3VW4 A;  1WEG A;  3OYJ A;  2NOB A;  3I0X A;  4UOB A;  1N3C A;  3FHF A;  4EW0 A;  1XQO A;  3OYI A;  3LCN A;  1VRL A;  4OFH A;  1RRQ A;  3D4V A;  2V75 A;  4EJY A;  5FRM A;  2ABK A;  2YG8 A;  3L2Q A;  3OYH A;  2I5W A;  4EVV A;  4BAC A;  3L2V A;  1MPG A;  1FN7 A;  1P7M A;  1PU6 A;  3N0U A;  5FRO A;  5KN8 A;  1N39 A;  3CWT A;  1KG3 A;  1LWV A;  3OYF A;  3OYC A;  4BE2 A;  1DIZ A;  1LMZ A;  1PU7 A;  3CW7 A;  4B21 A;  1KG4 A;  1MUY A;  3OY9 A;  3NNQ A;  4B24 A;  1YQL A;  4DK9 A;  4UNF A;  3L2W A;  4OFA A;  3IHO A;  3IH7 A;  3OS0 A;  3OS2 A;  4YPR A;  3S3M A;  2NOZ A;  1MUD A;  1MUN A;  3S6I A;  2JG6 A;  2NOF A;  4AIA A;  1RRS A;  3OYK A;  4ZTF A;  2NOH A;  4HSB A;  4BE1 A;  4E9E A;  1HU0 A;  2H56 A;  4B23 A;  4E7K A;  3F10 A;  1N3A A;  1EBM A;  4EA5 A;  4BDZ A;  4PII A;  4YOQ A;  3CVS A;  4AI4 A;  1KG2 A;  3CVT A;  4EJZ A;  1WEF A;  3OYG A;  3L2R A;  4AI5 A;  1YQK A; 
#chains in the Genus database with same CATH homology
 4EW4 A;  4B22 A;  2JHJ A;  1WEI A;  2NOI A;  4EA4 A;  5CHZ A;  1NGN A;  3OGD A;  1YQR A;  1XG7 A;  3FHG A;  1KO9 A;  5AN4 A;  3FSP A;  3OH9 A;  2XHI A;  1P59 A;  3F0Z A;  1PU8 A;  4OFE A;  3OH6 A;  1KG7 A;  3N5N X;  1LWW A;  4E9G A;  1YQM A;  1PVS A;  1ORP A;  3CWS A;  2OFK A;  3I0W A;  4E9H A;  3CWU A;  3CWA A;  1ORN A;  2JHN A;  1M3Q A;  4YPH A;  1LWY A;  5DPK A;  2OFI A;  2NOL A;  1KG5 A;  5KN9 A;  1KQJ A;  1XQP A;  3G0Q A;  1NKU A;  2YG9 A;  3KNT A;  1KG6 A;  3KTU A;  2NOE A;  1KEA A;  1WEG A;  2NOB A;  3I0X A;  4UOB A;  1N3C A;  3FHF A;  4EW0 A;  1XQO A;  1VRL A;  4OFH A;  1RRQ A;  3D4V A;  4EJY A;  2ABK A;  2YG8 A;  2I5W A;  4EVV A;  1MPG A;  1FN7 A;  1P7M A;  1PU6 A;  3N0U A;  5KN8 A;  1N39 A;  3CWT A;  1KG3 A;  1LWV A;  1DIZ A;  1LMZ A;  1PU7 A;  3CW7 A;  4B21 A;  1KG4 A;  1MUY A;  4B24 A;  1YQL A;  4DK9 A;  4AI5 A;  4UNF A;  4OFA A;  3IHO A;  3IH7 A;  4YPR A;  2NOZ A;  1MUD A;  1MUN A;  3S6I A;  2JG6 A;  2NOF A;  4AIA A;  1RRS A;  2NOH A;  4HSB A;  4E9E A;  1HU0 A;  2H56 A;  4B23 A;  3F10 A;  1N3A A;  1EBM A;  4EA5 A;  4PII A;  4YOQ A;  3CVS A;  4AI4 A;  1KG2 A;  3CVT A;  4EJZ A;  1WEF A;  1M3H A;  4E9F A;  1YQK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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