1KHDA

Crystal structure analysis of the anthranilate phosphoribosyltransferase from erwinia carotovora at 1.9 resolution (current name, pectobacterium carotovorum)
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
333
structure length
324
Chain Sequence
THQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRCDLLQAFGIRLDMSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLKLFGQDNLRHNAQLALETIRSGTAFERVTALAAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Anthranilate phosphoribosyltransferase
publication title The Crystal Structure of Anthranilate Phosphoribosyltransferase from the Enterobacterium Pectobacterium carotovorum
pubmed doi rcsb
source organism Pectobacterium carotovorum
total genus 111
structure length 324
sequence length 333
chains with identical sequence B, C, D
ec nomenclature ec 2.4.2.18: Anthranilate phosphoribosyltransferase.
pdb deposition date 2001-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 1khdA01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 1khdA02
2ELCA 3TWPA 4YEKA 4GIUA 4OWNA 1ZXYA 3UU1A 3R88A 4X58A 4ZOKA 5C7SA 3QQSA 4OWSA 4XR5A 1O17A 4GA4A 5BYTA 1V8GA 4EAFA 3QSAA 4ZOFA 2TPTA 4ZTVA 4OWUA 4X5CA 1ZYKA 4MUOA 1KGZA 3QS8A 4OWQA 4X5AA 4X5DA 4GA5A 4N5VA 5C2LA 4LHMA 5BNEA 4HKMA 1KHDA 5BO2A 1GXBA 4OWVA 2DSJA 4X59A 4GTNA 4X5EA 4EADA 4N8QA 2WK6A 1OTPA 3QR9A 4GKMA 4YYYA 1AZYA 2WK5A 1VQUA 4YI7A 4X46A 1ZVWA 5BO3A 5EY3A 2J0FA 2BPQA 4M0RA 5C1RA 4X5BA 2GVQA 4IJ1A 3R6CA 4OWOA 1UOUA 4N93A 4ZOJA 4GA6A 3H5QA 5EP8A 1BRWA 3GBRA 4OWMA
chains in the Genus database with same CATH superfamily
2ELCA 3TWPA 4YEKA 4GIUA 4OWNA 1ZXYA 3UU1A 3R88A 4X58A 4ZOKA 5C7SA 3QQSA 4OWSA 4XR5A 1O17A 4GA4A 5BYTA 1V8GA 4EAFA 3QSAA 4ZOFA 2TPTA 4ZTVA 4OWUA 4X5CA 1ZYKA 4MUOA 1KGZA 3QS8A 4OWQA 4X5AA 4X5DA 4GA5A 4N5VA 5C2LA 4LHMA 5BNEA 4HKMA 1KHDA 5BO2A 1GXBA 4OWVA 2DSJA 4X59A 4GTNA 4X5EA 4EADA 4N8QA 2WK6A 1OTPA 4F3FC 3QR9A 4GKMA 4YYYA 1AZYA 2WK5A 1VQUA 1RRZA 4YI7A 1RF8B 4X46A 1ZVWA 5BO3A 5EY3A 2J0FA 2BPQA 4M0RA 5C1RA 4X5BA 2GVQA 4IJ1A 3R6CA 4OWOA 1UOUA 4N93A 4ZOJA 4GA6A 3H5QA 5EP8A 1BRWA 3GBRA 4OWMA
chains in the Genus database with same CATH topology
2ELCA 3TWPA 4YEKA 4GIUA 4OWNA 1ZXYA 3UU1A 3R88A 4X58A 4ZOKA 5C7SA 3QQSA 4OWSA 4XR5A 1O17A 4GA4A 5BYTA 1V8GA 4EAFA 3QSAA 4ZOFA 2TPTA 4ZTVA 4OWUA 4X5CA 1ZYKA 4MUOA 1KGZA 3QS8A 4OWQA 4X5AA 4X5DA 4GA5A 4N5VA 5C2LA 4LHMA 5BNEA 4HKMA 1KHDA 5BO2A 1GXBA 4OWVA 2DSJA 4X59A 4GTNA 4X5EA 4EADA 4N8QA 2WK6A 1OTPA 3QR9A 4GKMA 4YYYA 1AZYA 2WK5A 1VQUA 4YI7A 4X46A 1ZVWA 5BO3A 5EY3A 2J0FA 2BPQA 4M0RA 5C1RA 4X5BA 2GVQA 4IJ1A 3R6CA 4OWOA 1UOUA 4N93A 4ZOJA 4GA6A 3H5QA 5EP8A 1BRWA 3GBRA 4OWMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ELC A;  3TWP A;  4YEK A;  4GIU A;  4OWN A;  1ZXY A;  3UU1 A;  3R88 A;  4X58 A;  4ZOK A;  5C7S A;  3QQS A;  4OWS A;  4XR5 A;  1O17 A;  4GA4 A;  5BYT A;  1V8G A;  4EAF A;  3QSA A;  4ZOF A;  2TPT A;  4ZTV A;  4OWU A;  4X5C A;  1ZYK A;  4MUO A;  1KGZ A;  3QS8 A;  4OWQ A;  4X5A A;  4X5D A;  4GA5 A;  4N5V A;  5C2L A;  4LHM A;  5BNE A;  4HKM A;  1KHD A;  5BO2 A;  1GXB A;  4OWV A;  2DSJ A;  4X59 A;  4GTN A;  4X5E A;  4EAD A;  4N8Q A;  2WK6 A;  1OTP A;  3QR9 A;  4GKM A;  4YYY A;  1AZY A;  2WK5 A;  1VQU A;  4YI7 A;  4X46 A;  1ZVW A;  5BO3 A;  5EY3 A;  2J0F A;  2BPQ A;  4M0R A;  5C1R A;  4X5B A;  2GVQ A;  4IJ1 A;  3R6C A;  4OWO A;  1UOU A;  4N93 A;  4ZOJ A;  4GA6 A;  3H5Q A;  5EP8 A;  1BRW A;  3GBR A;  4OWM A; 
#chains in the Genus database with same CATH topology
 2ELC A;  3TWP A;  4YEK A;  4GIU A;  4OWN A;  1ZXY A;  3UU1 A;  3R88 A;  4X58 A;  4ZOK A;  5C7S A;  3QQS A;  4OWS A;  4XR5 A;  1O17 A;  4GA4 A;  5BYT A;  1V8G A;  4EAF A;  3QSA A;  4ZOF A;  2TPT A;  4ZTV A;  4OWU A;  4X5C A;  1ZYK A;  4MUO A;  1KGZ A;  3QS8 A;  4OWQ A;  4X5A A;  4X5D A;  4GA5 A;  4N5V A;  5C2L A;  4LHM A;  5BNE A;  4HKM A;  1KHD A;  5BO2 A;  1GXB A;  4OWV A;  2DSJ A;  4X59 A;  4GTN A;  4X5E A;  4EAD A;  4N8Q A;  2WK6 A;  1OTP A;  4F3F C;  3QR9 A;  4GKM A;  4YYY A;  1AZY A;  2WK5 A;  1VQU A;  1RRZ A;  4YI7 A;  1RF8 B;  4X46 A;  1ZVW A;  5BO3 A;  5EY3 A;  2J0F A;  2BPQ A;  4M0R A;  5C1R A;  4X5B A;  2GVQ A;  4IJ1 A;  3R6C A;  4OWO A;  1UOU A;  4N93 A;  4ZOJ A;  4GA6 A;  3H5Q A;  5EP8 A;  1BRW A;  3GBR A;  4OWM A; 
#chains in the Genus database with same CATH homology
 2ELC A;  3TWP A;  4YEK A;  4GIU A;  4OWN A;  1ZXY A;  3UU1 A;  3R88 A;  4X58 A;  4ZOK A;  5C7S A;  3QQS A;  4OWS A;  4XR5 A;  1O17 A;  4GA4 A;  5BYT A;  1V8G A;  4EAF A;  3QSA A;  4ZOF A;  2TPT A;  4ZTV A;  4OWU A;  4X5C A;  1ZYK A;  4MUO A;  1KGZ A;  3QS8 A;  4OWQ A;  4X5A A;  4X5D A;  4GA5 A;  4N5V A;  5C2L A;  4LHM A;  5BNE A;  4HKM A;  1KHD A;  5BO2 A;  1GXB A;  4OWV A;  2DSJ A;  4X59 A;  4GTN A;  4X5E A;  4EAD A;  4N8Q A;  2WK6 A;  1OTP A;  3QR9 A;  4GKM A;  4YYY A;  1AZY A;  2WK5 A;  1VQU A;  4YI7 A;  4X46 A;  1ZVW A;  5BO3 A;  5EY3 A;  2J0F A;  2BPQ A;  4M0R A;  5C1R A;  4X5B A;  2GVQ A;  4IJ1 A;  3R6C A;  4OWO A;  1UOU A;  4N93 A;  4ZOJ A;  4GA6 A;  3H5Q A;  5EP8 A;  1BRW A;  3GBR A;  4OWM A; 
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similar chains in the Genus database (?% sequence similarity)
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