1KHDA

Crystal structure analysis of the anthranilate phosphoribosyltransferase from erwinia carotovora at 1.9 resolution (current name, pectobacterium carotovorum)
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
333
structure length
324
Chain Sequence
b'THQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRCDLLQAFGIRLDMSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLKLFGQDNLRHNAQLALETIRSGTAFERVTALAAR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Anthranilate phosphoribosyltransferase
publication title The Crystal Structure of Anthranilate Phosphoribosyltransferase from the Enterobacterium Pectobacterium carotovorum
pubmed doi rcsb
source organism Pectobacterium carotovorum
molecule tags Transferase
total genus 111
structure length 324
sequence length 333
chains with identical sequence B, C, D
ec nomenclature ec 2.4.2.18: Anthranilate phosphoribosyltransferase.
pdb deposition date 2001-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 1khdA01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 1khdA02
4GA5A 4HKMA 5EY3A 4X46A 3QQSA 4X58A 4X5CA 5BNEA 4ZOFA 1V8GA 4X5AA 1OTPA 4GKMA 1UOUA 1O17A 4OWQA 2J0FA 2TPTA 4OWMA 4EAFA 4OWOA 2DSJA 3TWPA 4X59A 4YI7A 5EP8A 5C1RA 3UU1A 4X5DA 1KGZA 5C7SA 4GA6A 4N5VA 3R88A 3H5QA 2WK6A 3R6CA 2WK5A 1ZVWA 3QR9A 4MUOA 4GTNA 4OWVA 5C2LA 1KHDA 4X5EA 4IJ1A 1VQUA 1ZXYA 5BO3A 2GVQA 3GBRA 4OWSA 1AZYA 4OWUA 4YEKA 4ZOJA 5BYTA 4EADA 4XR5A 4X5BA 4ZOKA 4M0RA 4LHMA 4YYYA 1BRWA 4GIUA 5BO2A 4OWNA 3QS8A 4N93A 3QSAA 2BPQA 4N8QA 4ZTVA 2ELCA 4GA4A 1GXBA 1ZYKA
chains in the Genus database with same CATH superfamily
4GA5A 4HKMA 5EY3A 4X46A 3QQSA 4X58A 4X5CA 5BNEA 4ZOFA 1V8GA 4F3FC 4X5AA 1OTPA 4GKMA 1UOUA 1O17A 4OWQA 2J0FA 2TPTA 4OWMA 4EAFA 4OWOA 2DSJA 3TWPA 4X59A 4YI7A 5EP8A 5C1RA 3UU1A 4X5DA 1KGZA 5C7SA 4GA6A 4N5VA 3R88A 3H5QA 2WK6A 3R6CA 2WK5A 1ZVWA 3QR9A 4MUOA 4GTNA 4OWVA 5C2LA 1KHDA 4X5EA 4IJ1A 1VQUA 1RRZA 1ZXYA 5BO3A 2GVQA 3GBRA 4OWSA 1AZYA 4OWUA 4YEKA 4ZOJA 5BYTA 4EADA 4XR5A 4X5BA 4ZOKA 4M0RA 4LHMA 4YYYA 1BRWA 4GIUA 5BO2A 1RF8B 4OWNA 3QS8A 4N93A 3QSAA 2BPQA 4N8QA 4ZTVA 2ELCA 4GA4A 1GXBA 1ZYKA
chains in the Genus database with same CATH topology
4GA5A 4HKMA 5EY3A 4X46A 3QQSA 4X58A 4X5CA 5BNEA 4ZOFA 1V8GA 4X5AA 1OTPA 4GKMA 1UOUA 1O17A 4OWQA 2J0FA 2TPTA 4OWMA 4EAFA 4OWOA 2DSJA 3TWPA 4X59A 4YI7A 5EP8A 5C1RA 3UU1A 4X5DA 1KGZA 5C7SA 4GA6A 4N5VA 3R88A 3H5QA 2WK6A 3R6CA 2WK5A 1ZVWA 3QR9A 4MUOA 4GTNA 4OWVA 5C2LA 1KHDA 4X5EA 4IJ1A 1VQUA 1ZXYA 5BO3A 2GVQA 3GBRA 4OWSA 1AZYA 4OWUA 4YEKA 4ZOJA 5BYTA 4EADA 4XR5A 4X5BA 4ZOKA 4M0RA 4LHMA 4YYYA 1BRWA 4GIUA 5BO2A 4OWNA 3QS8A 4N93A 3QSAA 2BPQA 4N8QA 4ZTVA 2ELCA 4GA4A 1GXBA 1ZYKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GA5 A;  4HKM A;  5EY3 A;  4X46 A;  3QQS A;  4X58 A;  4X5C A;  5BNE A;  4ZOF A;  1V8G A;  4X5A A;  1OTP A;  4GKM A;  1UOU A;  1O17 A;  4OWQ A;  2J0F A;  2TPT A;  4OWM A;  4EAF A;  4OWO A;  2DSJ A;  3TWP A;  4X59 A;  4YI7 A;  5EP8 A;  5C1R A;  3UU1 A;  4X5D A;  1KGZ A;  5C7S A;  4GA6 A;  4N5V A;  3R88 A;  3H5Q A;  2WK6 A;  3R6C A;  2WK5 A;  1ZVW A;  3QR9 A;  4MUO A;  4GTN A;  4OWV A;  5C2L A;  1KHD A;  4X5E A;  4IJ1 A;  1VQU A;  1ZXY A;  5BO3 A;  2GVQ A;  3GBR A;  4OWS A;  1AZY A;  4OWU A;  4YEK A;  4ZOJ A;  5BYT A;  4EAD A;  4XR5 A;  4X5B A;  4ZOK A;  4M0R A;  4LHM A;  4YYY A;  1BRW A;  4GIU A;  5BO2 A;  4OWN A;  3QS8 A;  4N93 A;  3QSA A;  2BPQ A;  4N8Q A;  4ZTV A;  2ELC A;  4GA4 A;  1GXB A;  1ZYK A; 
#chains in the Genus database with same CATH topology
 4GA5 A;  4HKM A;  5EY3 A;  4X46 A;  3QQS A;  4X58 A;  4X5C A;  5BNE A;  4ZOF A;  1V8G A;  4F3F C;  4X5A A;  1OTP A;  4GKM A;  1UOU A;  1O17 A;  4OWQ A;  2J0F A;  2TPT A;  4OWM A;  4EAF A;  4OWO A;  2DSJ A;  3TWP A;  4X59 A;  4YI7 A;  5EP8 A;  5C1R A;  3UU1 A;  4X5D A;  1KGZ A;  5C7S A;  4GA6 A;  4N5V A;  3R88 A;  3H5Q A;  2WK6 A;  3R6C A;  2WK5 A;  1ZVW A;  3QR9 A;  4MUO A;  4GTN A;  4OWV A;  5C2L A;  1KHD A;  4X5E A;  4IJ1 A;  1VQU A;  1RRZ A;  1ZXY A;  5BO3 A;  2GVQ A;  3GBR A;  4OWS A;  1AZY A;  4OWU A;  4YEK A;  4ZOJ A;  5BYT A;  4EAD A;  4XR5 A;  4X5B A;  4ZOK A;  4M0R A;  4LHM A;  4YYY A;  1BRW A;  4GIU A;  5BO2 A;  1RF8 B;  4OWN A;  3QS8 A;  4N93 A;  3QSA A;  2BPQ A;  4N8Q A;  4ZTV A;  2ELC A;  4GA4 A;  1GXB A;  1ZYK A; 
#chains in the Genus database with same CATH homology
 4GA5 A;  4HKM A;  5EY3 A;  4X46 A;  3QQS A;  4X58 A;  4X5C A;  5BNE A;  4ZOF A;  1V8G A;  4X5A A;  1OTP A;  4GKM A;  1UOU A;  1O17 A;  4OWQ A;  2J0F A;  2TPT A;  4OWM A;  4EAF A;  4OWO A;  2DSJ A;  3TWP A;  4X59 A;  4YI7 A;  5EP8 A;  5C1R A;  3UU1 A;  4X5D A;  1KGZ A;  5C7S A;  4GA6 A;  4N5V A;  3R88 A;  3H5Q A;  2WK6 A;  3R6C A;  2WK5 A;  1ZVW A;  3QR9 A;  4MUO A;  4GTN A;  4OWV A;  5C2L A;  1KHD A;  4X5E A;  4IJ1 A;  1VQU A;  1ZXY A;  5BO3 A;  2GVQ A;  3GBR A;  4OWS A;  1AZY A;  4OWU A;  4YEK A;  4ZOJ A;  5BYT A;  4EAD A;  4XR5 A;  4X5B A;  4ZOK A;  4M0R A;  4LHM A;  4YYY A;  1BRW A;  4GIU A;  5BO2 A;  4OWN A;  3QS8 A;  4N93 A;  3QSA A;  2BPQ A;  4N8Q A;  4ZTV A;  2ELC A;  4GA4 A;  1GXB A;  1ZYK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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