1KHNA

E. coli alkaline phosphatase mutant (d153hd330n) zinc form
Total Genus 142
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
Knots found
sequence length
444
structure length
444
Chain Sequence
VLENRAAQGNITAPGGARRLTGDQTAALRNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYGPSATSQKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREEAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQNHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
molecule keywords Alkaline phosphatase
source organism Escherichia coli
molecule tags Hydrolase
total genus 142
structure length 444
sequence length 444
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1khnA00
4UPIA 4UOOA 2W5QA 4UOPA 2GSOA 5DLTA 1ELZA 5GOVA 1P49A 2GA3A 1ELXA 3WAVA 4NWXA 2IUCA 2W8DA 1Y7AA 5LRMA 3M8YA 1ALJA 1SHQA 4FDIA 4KJGA 4UPHA 5KXAA 5L0KA 1SHNA 3SZZA 4KAVA 1AJBA 4GTYA 3NKNA 2GSNA 4GTWA 4GTXA 4UORA 1Y6VA 4CYRA 4FDJA 4LR2A 3NKOA 1AJCA 3KD8A 2RH6A 4LR7A 4LRBA 4ZG6A 4ZG9A 1EW8A 1ED8A 4LRAA 2W5RA 3T01A 5GRRA 5L0BA 5LIAA 5LRNA 3TWZA 2D1GA 1URBA 1KHLA 3IGYB 3UN5A 3NKMA 3M8WA 1E2SP 1EQJA 3LXQA 1EI6A 4NWJA 3MK0A 4CYSA 1KHKA 4LRDA 4ZG7A 1HDHA 2ANHA 2X98A 4CXUA 1ALIA 2GLQA 3MK2A 4QAXA 1ALKA 4LRCA 2W5SA 5DLWA 3T02A 3UN3A 1FSUA 4N7TA 1ALHA 4LRFA 5AJ9A 1KHNA 1KH5A 5EGEA 4LR8A 3A52A 3M8ZA 3UNYA 5INHA 1O98A 4YR1A 3UN2A 1HJKA 3BDGB 3NKPA 1N2KA 3WAWA 4CXKA 1AJAA 1E1ZP 1K7HA 3UO0A 3WAXA 3SZYA 5EGHA 3DYCA 2XR9A 1AUKA 2IFYA 3IGZB 3MK1A 5HRTA 3CMRA 4MHXA 5C66A 1EJJA 3BDHA 4CXSA 1ANIA 5K4PA 3DPCA 1EW9A 2W5TA 3M7VA 5IJQA 1KH4A 3Q3QA 1B8JA 1ED9A 1EW2A 3BDFA 4B56A 2ZKTA 2W5XA 3OT9A 3WAYA 5LQQA 3T00A 3B5QA 4MY4A 3NVLA 1KHJA 4TN0A 3ED4A 5DLVA 1URAA 3TG0A 5L0EA 1ANJA 2W5VA 2QZUA 4MIVA 1ZEFA 1ELYA 1KH7A 2XRGA 4ZGAA 1N2LA 2G9YA 1E3CP 1E33P 2VQRA 4LQYA 1HQAA 2IUCB 4LR9A 4KM4A 1KH9A 3BDGA 4GTZA 4UPKA 4KAYA 3IDDA 2W8SA 2GSUA 4UPLA 4LREA 1ZEDA 3NKRA 5TJ3A 3TX0A 1ZEBA 3WBHA 2W5WA 5IJSA 3E2DA 3NKQA 4KJDA 1AJDA 1O99A
chains in the Genus database with same CATH superfamily
4UPIA 4UOOA 2W5QA 4UOPA 2GSOA 5DLTA 1ELZA 5GOVA 1P49A 2GA3A 1ELXA 3WAVA 4NWXA 2IUCA 2W8DA 1Y7AA 5LRMA 3M8YA 1ALJA 1SHQA 4FDIA 4KJGA 4UPHA 5KXAA 5L0KA 1SHNA 3SZZA 4KAVA 1AJBA 4GTYA 3NKNA 2GSNA 4GTWA 4GTXA 4UORA 1Y6VA 4CYRA 4FDJA 4LR2A 3NKOA 1AJCA 3KD8A 2RH6A 4LR7A 4LRBA 4ZG6A 4ZG9A 1EW8A 1ED8A 4LRAA 2W5RA 3T01A 5GRRA 5L0BA 5LIAA 5LRNA 3TWZA 2D1GA 1URBA 1KHLA 3IGYB 3UN5A 3NKMA 3M8WA 1E2SP 1EQJA 3LXQA 1EI6A 4NWJA 3MK0A 4CYSA 1KHKA 4LRDA 4ZG7A 1HDHA 2ANHA 2X98A 4CXUA 1ALIA 2GLQA 3MK2A 4QAXA 1ALKA 4LRCA 2W5SA 5DLWA 3T02A 3UN3A 1FSUA 4N7TA 1ALHA 4LRFA 5AJ9A 1KHNA 1KH5A 5EGEA 4LR8A 3A52A 3M8ZA 3UNYA 5INHA 1O98A 4YR1A 3UN2A 1HJKA 3BDGB 3NKPA 1N2KA 3WAWA 4CXKA 1AJAA 1E1ZP 1K7HA 3UO0A 3WAXA 3SZYA 5EGHA 3DYCA 2XR9A 1AUKA 2IFYA 3IGZB 3MK1A 5HRTA 3CMRA 4MHXA 5C66A 1EJJA 3BDHA 4CXSA 1ANIA 5K4PA 3DPCA 1EW9A 2W5TA 3M7VA 5IJQA 1KH4A 3Q3QA 1B8JA 1ED9A 1EW2A 3BDFA 4B56A 2ZKTA 2W5XA 3OT9A 3WAYA 5LQQA 3T00A 3B5QA 4MY4A 3NVLA 1KHJA 4TN0A 3ED4A 5DLVA 1URAA 3TG0A 5L0EA 1ANJA 2W5VA 2QZUA 4MIVA 1ZEFA 1ELYA 1KH7A 2XRGA 4ZGAA 1N2LA 2G9YA 1E3CP 1E33P 2VQRA 4LQYA 1HQAA 2IUCB 4LR9A 4KM4A 1KH9A 3BDGA 4GTZA 4UPKA 4KAYA 3IDDA 2W8SA 2GSUA 4UPLA 4LREA 1ZEDA 3NKRA 5TJ3A 3TX0A 1ZEBA 3WBHA 2W5WA 5IJSA 3E2DA 3NKQA 4KJDA 1AJDA 1O99A
chains in the Genus database with same CATH topology
4UPIA 4UOOA 2W5QA 4UOPA 2GSOA 5DLTA 1ELZA 5GOVA 1P49A 2GA3A 1ELXA 3WAVA 4NWXA 2IUCA 2W8DA 1Y7AA 5LRMA 3M8YA 1ALJA 1SHQA 4FDIA 4KJGA 4UPHA 5KXAA 5L0KA 1SHNA 3SZZA 4KAVA 1AJBA 4GTYA 3NKNA 2GSNA 4GTWA 4GTXA 4UORA 1Y6VA 4CYRA 4FDJA 4LR2A 3NKOA 1AJCA 3KD8A 2RH6A 4LR7A 4LRBA 4ZG6A 4ZG9A 1EW8A 1ED8A 4LRAA 2W5RA 3T01A 5GRRA 5L0BA 5LIAA 5LRNA 3TWZA 2D1GA 1URBA 1KHLA 3IGYB 3UN5A 3NKMA 3M8WA 1E2SP 1EQJA 3LXQA 1EI6A 4NWJA 3MK0A 4CYSA 1KHKA 4LRDA 4ZG7A 1HDHA 2ANHA 2X98A 4CXUA 1ALIA 2GLQA 3MK2A 4QAXA 1ALKA 4LRCA 2W5SA 5DLWA 3T02A 3UN3A 1FSUA 4N7TA 1ALHA 4LRFA 5AJ9A 1KHNA 1KH5A 5EGEA 4LR8A 3A52A 3M8ZA 3UNYA 5INHA 1O98A 4YR1A 3UN2A 1HJKA 3BDGB 3NKPA 1N2KA 3WAWA 4CXKA 1AJAA 1E1ZP 1K7HA 3UO0A 3WAXA 3SZYA 5EGHA 3DYCA 2XR9A 1AUKA 2IFYA 3IGZB 3MK1A 5HRTA 3CMRA 4MHXA 5C66A 1EJJA 3BDHA 4CXSA 1ANIA 5K4PA 3DPCA 1EW9A 2W5TA 3M7VA 5IJQA 1KH4A 3Q3QA 1B8JA 1ED9A 1EW2A 3BDFA 4B56A 2ZKTA 2W5XA 3OT9A 3WAYA 5LQQA 3T00A 3B5QA 4MY4A 3NVLA 1KHJA 4TN0A 3ED4A 5DLVA 1URAA 3TG0A 5L0EA 1ANJA 2W5VA 2QZUA 4MIVA 1ZEFA 1ELYA 1KH7A 2XRGA 4ZGAA 1N2LA 2G9YA 1E3CP 1E33P 2VQRA 4LQYA 1HQAA 2IUCB 4LR9A 4KM4A 1KH9A 3BDGA 4GTZA 4UPKA 4KAYA 3IDDA 2W8SA 2GSUA 4UPLA 4LREA 1ZEDA 3NKRA 5TJ3A 3TX0A 1ZEBA 3WBHA 2W5WA 5IJSA 3E2DA 3NKQA 4KJDA 1AJDA 1O99A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UPI A;  4UOO A;  2W5Q A;  4UOP A;  2GSO A;  5DLT A;  1ELZ A;  5GOV A;  1P49 A;  2GA3 A;  1ELX A;  3WAV A;  4NWX A;  2IUC A;  2W8D A;  1Y7A A;  5LRM A;  3M8Y A;  1ALJ A;  1SHQ A;  4FDI A;  4KJG A;  4UPH A;  5KXA A;  5L0K A;  1SHN A;  3SZZ A;  4KAV A;  1AJB A;  4GTY A;  3NKN A;  2GSN A;  4GTW A;  4GTX A;  4UOR A;  1Y6V A;  4CYR A;  4FDJ A;  4LR2 A;  3NKO A;  1AJC A;  3KD8 A;  2RH6 A;  4LR7 A;  4LRB A;  4ZG6 A;  4ZG9 A;  1EW8 A;  1ED8 A;  4LRA A;  2W5R A;  3T01 A;  5GRR A;  5L0B A;  5LIA A;  5LRN A;  3TWZ A;  2D1G A;  1URB A;  1KHL A;  3IGY B;  3UN5 A;  3NKM A;  3M8W A;  1E2S P;  1EQJ A;  3LXQ A;  1EI6 A;  4NWJ A;  3MK0 A;  4CYS A;  1KHK A;  4LRD A;  4ZG7 A;  1HDH A;  2ANH A;  2X98 A;  4CXU A;  1ALI A;  2GLQ A;  3MK2 A;  4QAX A;  1ALK A;  4LRC A;  2W5S A;  5DLW A;  3T02 A;  3UN3 A;  1FSU A;  4N7T A;  1ALH A;  4LRF A;  5AJ9 A;  1KHN A;  1KH5 A;  5EGE A;  4LR8 A;  3A52 A;  3M8Z A;  3UNY A;  5INH A;  1O98 A;  4YR1 A;  3UN2 A;  1HJK A;  3BDG B;  3NKP A;  1N2K A;  3WAW A;  4CXK A;  1AJA A;  1E1Z P;  1K7H A;  3UO0 A;  3WAX A;  3SZY A;  5EGH A;  3DYC A;  2XR9 A;  1AUK A;  2IFY A;  3IGZ B;  3MK1 A;  5HRT A;  3CMR A;  4MHX A;  5C66 A;  1EJJ A;  3BDH A;  4CXS A;  1ANI A;  5K4P A;  3DPC A;  1EW9 A;  2W5T A;  3M7V A;  5IJQ A;  1KH4 A;  3Q3Q A;  1B8J A;  1ED9 A;  1EW2 A;  3BDF A;  4B56 A;  2ZKT A;  2W5X A;  3OT9 A;  3WAY A;  5LQQ A;  3T00 A;  3B5Q A;  4MY4 A;  3NVL A;  1KHJ A;  4TN0 A;  3ED4 A;  5DLV A;  1URA A;  3TG0 A;  5L0E A;  1ANJ A;  2W5V A;  2QZU A;  4MIV A;  1ZEF A;  1ELY A;  1KH7 A;  2XRG A;  4ZGA A;  1N2L A;  2G9Y A;  1E3C P;  1E33 P;  2VQR A;  4LQY A;  1HQA A;  2IUC B;  4LR9 A;  4KM4 A;  1KH9 A;  3BDG A;  4GTZ A;  4UPK A;  4KAY A;  3IDD A;  2W8S A;  2GSU A;  4UPL A;  4LRE A;  1ZED A;  3NKR A;  5TJ3 A;  3TX0 A;  1ZEB A;  3WBH A;  2W5W A;  5IJS A;  3E2D A;  3NKQ A;  4KJD A;  1AJD A;  1O99 A; 
#chains in the Genus database with same CATH topology
 4UPI A;  4UOO A;  2W5Q A;  4UOP A;  2GSO A;  5DLT A;  1ELZ A;  5GOV A;  1P49 A;  2GA3 A;  1ELX A;  3WAV A;  4NWX A;  2IUC A;  2W8D A;  1Y7A A;  5LRM A;  3M8Y A;  1ALJ A;  1SHQ A;  4FDI A;  4KJG A;  4UPH A;  5KXA A;  5L0K A;  1SHN A;  3SZZ A;  4KAV A;  1AJB A;  4GTY A;  3NKN A;  2GSN A;  4GTW A;  4GTX A;  4UOR A;  1Y6V A;  4CYR A;  4FDJ A;  4LR2 A;  3NKO A;  1AJC A;  3KD8 A;  2RH6 A;  4LR7 A;  4LRB A;  4ZG6 A;  4ZG9 A;  1EW8 A;  1ED8 A;  4LRA A;  2W5R A;  3T01 A;  5GRR A;  5L0B A;  5LIA A;  5LRN A;  3TWZ A;  2D1G A;  1URB A;  1KHL A;  3IGY B;  3UN5 A;  3NKM A;  3M8W A;  1E2S P;  1EQJ A;  3LXQ A;  1EI6 A;  4NWJ A;  3MK0 A;  4CYS A;  1KHK A;  4LRD A;  4ZG7 A;  1HDH A;  2ANH A;  2X98 A;  4CXU A;  1ALI A;  2GLQ A;  3MK2 A;  4QAX A;  1ALK A;  4LRC A;  2W5S A;  5DLW A;  3T02 A;  3UN3 A;  1FSU A;  4N7T A;  1ALH A;  4LRF A;  5AJ9 A;  1KHN A;  1KH5 A;  5EGE A;  4LR8 A;  3A52 A;  3M8Z A;  3UNY A;  5INH A;  1O98 A;  4YR1 A;  3UN2 A;  1HJK A;  3BDG B;  3NKP A;  1N2K A;  3WAW A;  4CXK A;  1AJA A;  1E1Z P;  1K7H A;  3UO0 A;  3WAX A;  3SZY A;  5EGH A;  3DYC A;  2XR9 A;  1AUK A;  2IFY A;  3IGZ B;  3MK1 A;  5HRT A;  3CMR A;  4MHX A;  5C66 A;  1EJJ A;  3BDH A;  4CXS A;  1ANI A;  5K4P A;  3DPC A;  1EW9 A;  2W5T A;  3M7V A;  5IJQ A;  1KH4 A;  3Q3Q A;  1B8J A;  1ED9 A;  1EW2 A;  3BDF A;  4B56 A;  2ZKT A;  2W5X A;  3OT9 A;  3WAY A;  5LQQ A;  3T00 A;  3B5Q A;  4MY4 A;  3NVL A;  1KHJ A;  4TN0 A;  3ED4 A;  5DLV A;  1URA A;  3TG0 A;  5L0E A;  1ANJ A;  2W5V A;  2QZU A;  4MIV A;  1ZEF A;  1ELY A;  1KH7 A;  2XRG A;  4ZGA A;  1N2L A;  2G9Y A;  1E3C P;  1E33 P;  2VQR A;  4LQY A;  1HQA A;  2IUC B;  4LR9 A;  4KM4 A;  1KH9 A;  3BDG A;  4GTZ A;  4UPK A;  4KAY A;  3IDD A;  2W8S A;  2GSU A;  4UPL A;  4LRE A;  1ZED A;  3NKR A;  5TJ3 A;  3TX0 A;  1ZEB A;  3WBH A;  2W5W A;  5IJS A;  3E2D A;  3NKQ A;  4KJD A;  1AJD A;  1O99 A; 
#chains in the Genus database with same CATH homology
 4UPI A;  4UOO A;  2W5Q A;  4UOP A;  2GSO A;  5DLT A;  1ELZ A;  5GOV A;  1P49 A;  2GA3 A;  1ELX A;  3WAV A;  4NWX A;  2IUC A;  2W8D A;  1Y7A A;  5LRM A;  3M8Y A;  1ALJ A;  1SHQ A;  4FDI A;  4KJG A;  4UPH A;  5KXA A;  5L0K A;  1SHN A;  3SZZ A;  4KAV A;  1AJB A;  4GTY A;  3NKN A;  2GSN A;  4GTW A;  4GTX A;  4UOR A;  1Y6V A;  4CYR A;  4FDJ A;  4LR2 A;  3NKO A;  1AJC A;  3KD8 A;  2RH6 A;  4LR7 A;  4LRB A;  4ZG6 A;  4ZG9 A;  1EW8 A;  1ED8 A;  4LRA A;  2W5R A;  3T01 A;  5GRR A;  5L0B A;  5LIA A;  5LRN A;  3TWZ A;  2D1G A;  1URB A;  1KHL A;  3IGY B;  3UN5 A;  3NKM A;  3M8W A;  1E2S P;  1EQJ A;  3LXQ A;  1EI6 A;  4NWJ A;  3MK0 A;  4CYS A;  1KHK A;  4LRD A;  4ZG7 A;  1HDH A;  2ANH A;  2X98 A;  4CXU A;  1ALI A;  2GLQ A;  3MK2 A;  4QAX A;  1ALK A;  4LRC A;  2W5S A;  5DLW A;  3T02 A;  3UN3 A;  1FSU A;  4N7T A;  1ALH A;  4LRF A;  5AJ9 A;  1KHN A;  1KH5 A;  5EGE A;  4LR8 A;  3A52 A;  3M8Z A;  3UNY A;  5INH A;  1O98 A;  4YR1 A;  3UN2 A;  1HJK A;  3BDG B;  3NKP A;  1N2K A;  3WAW A;  4CXK A;  1AJA A;  1E1Z P;  1K7H A;  3UO0 A;  3WAX A;  3SZY A;  5EGH A;  3DYC A;  2XR9 A;  1AUK A;  2IFY A;  3IGZ B;  3MK1 A;  5HRT A;  3CMR A;  4MHX A;  5C66 A;  1EJJ A;  3BDH A;  4CXS A;  1ANI A;  5K4P A;  3DPC A;  1EW9 A;  2W5T A;  3M7V A;  5IJQ A;  1KH4 A;  3Q3Q A;  1B8J A;  1ED9 A;  1EW2 A;  3BDF A;  4B56 A;  2ZKT A;  2W5X A;  3OT9 A;  3WAY A;  5LQQ A;  3T00 A;  3B5Q A;  4MY4 A;  3NVL A;  1KHJ A;  4TN0 A;  3ED4 A;  5DLV A;  1URA A;  3TG0 A;  5L0E A;  1ANJ A;  2W5V A;  2QZU A;  4MIV A;  1ZEF A;  1ELY A;  1KH7 A;  2XRG A;  4ZGA A;  1N2L A;  2G9Y A;  1E3C P;  1E33 P;  2VQR A;  4LQY A;  1HQA A;  2IUC B;  4LR9 A;  4KM4 A;  1KH9 A;  3BDG A;  4GTZ A;  4UPK A;  4KAY A;  3IDD A;  2W8S A;  2GSU A;  4UPL A;  4LRE A;  1ZED A;  3NKR A;  5TJ3 A;  3TX0 A;  1ZEB A;  3WBH A;  2W5W A;  5IJS A;  3E2D A;  3NKQ A;  4KJD A;  1AJD A;  1O99 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...