1KHNA

E. coli alkaline phosphatase mutant (d153hd330n) zinc form
Total Genus 142
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
Knots found
sequence length
444
structure length
444
Chain Sequence
VLENRAAQGNITAPGGARRLTGDQTAALRNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYGPSATSQKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREEAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQNHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Escherichia coli
publication title Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
molecule keywords Alkaline phosphatase
total genus 142
structure length 444
sequence length 444
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1khnA00
2W5RA 5GOVA 1ANJA 1HJKA 1KHKA 1ELYA 3MK1A 2IUCA 4LRCA 1EJJA 4ZG6A 1O98A 1SHNA 1ED8A 1KH5A 1ZEDA 5TJ3A 3OT9A 3CMRA 4LRAA 2G9YA 4LRDA 4NWJA 4CXUA 5L0KA 3WAWA 1KHNA 1ELXA 3T02A 5L0BA 2XRGA 1K7HA 3NKMA 4CXSA 3M8WA 5LIAA 1KH4A 1URBA 5LQQA 2W8SA 1KH7A 5DLWA 5LRNA 3MK0A 5DLTA 2ZKTA 4GTWA 4LR2A 1N2LA 3A52A 4LQYA 2QZUA 4UPLA 4LRBA 3UN3A 3UN2A 1ED9A 3IDDA 4NWXA 1URAA 3SZYA 4FDIA 3M8YA 3WBHA 2IUCB 3NKPA 1ZEFA 4QAXA 3DPCA 5IJQA 5L0EA 1ALKA 3BDGA 1KH9A 1ALIA 1EI6A 3NKQA 3TX0A 1ANIA 1ELZA 1B8JA 2GA3A 4B56A 4KAVA 4UPKA 1EW9A 4LREA 3T00A 1AJCA 3WAVA 2GSOA 1Y6VA 5AJ9A 3NKOA 3TWZA 4UOOA 4TN0A 4CYRA 4MHXA 1O99A 3M7VA 1AJDA 3E2DA 3MK2A 5HRTA 3UO0A 2D1GA 3B5QA 4MY4A 1SHQA 4UPHA 3SZZA 1E3CP 4FDJA 5DLVA 1EW8A 2XR9A 3IGYB 4CXKA 4KJDA 4MIVA 1HQAA 2GLQA 1E33P 1HDHA 5IJSA 5K4PA 3NKRA 4UORA 4LR7A 1AUKA 2W5QA 3BDGB 4GTYA 3T01A 2GSNA 2W5WA 3TG0A 3WAYA 1ZEBA 1ALHA 4UOPA 4LR8A 3M8ZA 1FSUA 2ANHA 2VQRA 3WAXA 4LR9A 2RH6A 2W5XA 5KXAA 5INHA 1AJBA 1EQJA 1E1ZP 1AJAA 1EW2A 4N7TA 4GTZA 4ZGAA 1KHLA 4UPIA 3ED4A 5EGEA 3UNYA 3Q3QA 5C66A 3KD8A 1KHJA 3BDHA 5GRRA 3DYCA 4KAYA 4KJGA 4ZG9A 2IFYA 2W8DA 5LRMA 1N2KA 3LXQA 4LRFA 3UN5A 4ZG7A 2W5TA 1E2SP 2W5VA 2X98A 1Y7AA 2GSUA 4KM4A 5EGHA 1ALJA 3NKNA 4GTXA 4CYSA 3BDFA 4YR1A 3NVLA 2W5SA 3IGZB 1P49A
chains in the Genus database with same CATH superfamily
2W5RA 5GOVA 1ANJA 1HJKA 1KHKA 1ELYA 3MK1A 2IUCA 4LRCA 1EJJA 4ZG6A 1O98A 1SHNA 1ED8A 1KH5A 1ZEDA 5TJ3A 3OT9A 3CMRA 4LRAA 2G9YA 4LRDA 4NWJA 4CXUA 5L0KA 3WAWA 1KHNA 1ELXA 3T02A 5L0BA 2XRGA 1K7HA 3NKMA 4CXSA 3M8WA 5LIAA 1KH4A 1URBA 5LQQA 2W8SA 1KH7A 5DLWA 5LRNA 3MK0A 5DLTA 2ZKTA 4GTWA 4LR2A 1N2LA 3A52A 4LQYA 2QZUA 4UPLA 4LRBA 3UN3A 3UN2A 1ED9A 3IDDA 4NWXA 1URAA 3SZYA 4FDIA 3M8YA 3WBHA 2IUCB 3NKPA 1ZEFA 4QAXA 3DPCA 5IJQA 5L0EA 1ALKA 3BDGA 1KH9A 1ALIA 1EI6A 3NKQA 3TX0A 1ANIA 1ELZA 1B8JA 2GA3A 4B56A 4KAVA 4UPKA 1EW9A 4LREA 3T00A 1AJCA 3WAVA 2GSOA 1Y6VA 5AJ9A 3NKOA 3TWZA 4UOOA 4TN0A 4CYRA 4MHXA 1O99A 3M7VA 1AJDA 3E2DA 3MK2A 5HRTA 3UO0A 2D1GA 3B5QA 4MY4A 1SHQA 4UPHA 3SZZA 1E3CP 4FDJA 5DLVA 1EW8A 2XR9A 3IGYB 4CXKA 4KJDA 4MIVA 1HQAA 2GLQA 1E33P 1HDHA 5IJSA 5K4PA 3NKRA 4UORA 4LR7A 1AUKA 2W5QA 3BDGB 4GTYA 3T01A 2GSNA 2W5WA 3TG0A 3WAYA 1ZEBA 1ALHA 4UOPA 4LR8A 3M8ZA 1FSUA 2ANHA 2VQRA 3WAXA 4LR9A 2RH6A 2W5XA 5KXAA 5INHA 1AJBA 1EQJA 1E1ZP 1AJAA 1EW2A 4N7TA 4GTZA 4ZGAA 1KHLA 4UPIA 3ED4A 5EGEA 3UNYA 3Q3QA 5C66A 3KD8A 1KHJA 3BDHA 5GRRA 3DYCA 4KAYA 4KJGA 4ZG9A 2IFYA 2W8DA 5LRMA 1N2KA 3LXQA 4LRFA 3UN5A 4ZG7A 2W5TA 1E2SP 2W5VA 2X98A 1Y7AA 2GSUA 4KM4A 5EGHA 1ALJA 3NKNA 4GTXA 4CYSA 3BDFA 4YR1A 3NVLA 2W5SA 3IGZB 1P49A
chains in the Genus database with same CATH topology
2W5RA 5GOVA 1ANJA 1HJKA 1KHKA 1ELYA 3MK1A 2IUCA 4LRCA 1EJJA 4ZG6A 1O98A 1SHNA 1ED8A 1KH5A 1ZEDA 5TJ3A 3OT9A 3CMRA 4LRAA 2G9YA 4LRDA 4NWJA 4CXUA 5L0KA 3WAWA 1KHNA 1ELXA 3T02A 5L0BA 2XRGA 1K7HA 3NKMA 4CXSA 3M8WA 5LIAA 1KH4A 1URBA 5LQQA 2W8SA 1KH7A 5DLWA 5LRNA 3MK0A 5DLTA 2ZKTA 4GTWA 4LR2A 1N2LA 3A52A 4LQYA 2QZUA 4UPLA 4LRBA 3UN3A 3UN2A 1ED9A 3IDDA 4NWXA 1URAA 3SZYA 4FDIA 3M8YA 3WBHA 2IUCB 3NKPA 1ZEFA 4QAXA 3DPCA 5IJQA 5L0EA 1ALKA 3BDGA 1KH9A 1ALIA 1EI6A 3NKQA 3TX0A 1ANIA 1ELZA 1B8JA 2GA3A 4B56A 4KAVA 4UPKA 1EW9A 4LREA 3T00A 1AJCA 3WAVA 2GSOA 1Y6VA 5AJ9A 3NKOA 3TWZA 4UOOA 4TN0A 4CYRA 4MHXA 1O99A 3M7VA 1AJDA 3E2DA 3MK2A 5HRTA 3UO0A 2D1GA 3B5QA 4MY4A 1SHQA 4UPHA 3SZZA 1E3CP 4FDJA 5DLVA 1EW8A 2XR9A 3IGYB 4CXKA 4KJDA 4MIVA 1HQAA 2GLQA 1E33P 1HDHA 5IJSA 5K4PA 3NKRA 4UORA 4LR7A 1AUKA 2W5QA 3BDGB 4GTYA 3T01A 2GSNA 2W5WA 3TG0A 3WAYA 1ZEBA 1ALHA 4UOPA 4LR8A 3M8ZA 1FSUA 2ANHA 2VQRA 3WAXA 4LR9A 2RH6A 2W5XA 5KXAA 5INHA 1AJBA 1EQJA 1E1ZP 1AJAA 1EW2A 4N7TA 4GTZA 4ZGAA 1KHLA 4UPIA 3ED4A 5EGEA 3UNYA 3Q3QA 5C66A 3KD8A 1KHJA 3BDHA 5GRRA 3DYCA 4KAYA 4KJGA 4ZG9A 2IFYA 2W8DA 5LRMA 1N2KA 3LXQA 4LRFA 3UN5A 4ZG7A 2W5TA 1E2SP 2W5VA 2X98A 1Y7AA 2GSUA 4KM4A 5EGHA 1ALJA 3NKNA 4GTXA 4CYSA 3BDFA 4YR1A 3NVLA 2W5SA 3IGZB 1P49A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W5R A;  5GOV A;  1ANJ A;  1HJK A;  1KHK A;  1ELY A;  3MK1 A;  2IUC A;  4LRC A;  1EJJ A;  4ZG6 A;  1O98 A;  1SHN A;  1ED8 A;  1KH5 A;  1ZED A;  5TJ3 A;  3OT9 A;  3CMR A;  4LRA A;  2G9Y A;  4LRD A;  4NWJ A;  4CXU A;  5L0K A;  3WAW A;  1KHN A;  1ELX A;  3T02 A;  5L0B A;  2XRG A;  1K7H A;  3NKM A;  4CXS A;  3M8W A;  5LIA A;  1KH4 A;  1URB A;  5LQQ A;  2W8S A;  1KH7 A;  5DLW A;  5LRN A;  3MK0 A;  5DLT A;  2ZKT A;  4GTW A;  4LR2 A;  1N2L A;  3A52 A;  4LQY A;  2QZU A;  4UPL A;  4LRB A;  3UN3 A;  3UN2 A;  1ED9 A;  3IDD A;  4NWX A;  1URA A;  3SZY A;  4FDI A;  3M8Y A;  3WBH A;  2IUC B;  3NKP A;  1ZEF A;  4QAX A;  3DPC A;  5IJQ A;  5L0E A;  1ALK A;  3BDG A;  1KH9 A;  1ALI A;  1EI6 A;  3NKQ A;  3TX0 A;  1ANI A;  1ELZ A;  1B8J A;  2GA3 A;  4B56 A;  4KAV A;  4UPK A;  1EW9 A;  4LRE A;  3T00 A;  1AJC A;  3WAV A;  2GSO A;  1Y6V A;  5AJ9 A;  3NKO A;  3TWZ A;  4UOO A;  4TN0 A;  4CYR A;  4MHX A;  1O99 A;  3M7V A;  1AJD A;  3E2D A;  3MK2 A;  5HRT A;  3UO0 A;  2D1G A;  3B5Q A;  4MY4 A;  1SHQ A;  4UPH A;  3SZZ A;  1E3C P;  4FDJ A;  5DLV A;  1EW8 A;  2XR9 A;  3IGY B;  4CXK A;  4KJD A;  4MIV A;  1HQA A;  2GLQ A;  1E33 P;  1HDH A;  5IJS A;  5K4P A;  3NKR A;  4UOR A;  4LR7 A;  1AUK A;  2W5Q A;  3BDG B;  4GTY A;  3T01 A;  2GSN A;  2W5W A;  3TG0 A;  3WAY A;  1ZEB A;  1ALH A;  4UOP A;  4LR8 A;  3M8Z A;  1FSU A;  2ANH A;  2VQR A;  3WAX A;  4LR9 A;  2RH6 A;  2W5X A;  5KXA A;  5INH A;  1AJB A;  1EQJ A;  1E1Z P;  1AJA A;  1EW2 A;  4N7T A;  4GTZ A;  4ZGA A;  1KHL A;  4UPI A;  3ED4 A;  5EGE A;  3UNY A;  3Q3Q A;  5C66 A;  3KD8 A;  1KHJ A;  3BDH A;  5GRR A;  3DYC A;  4KAY A;  4KJG A;  4ZG9 A;  2IFY A;  2W8D A;  5LRM A;  1N2K A;  3LXQ A;  4LRF A;  3UN5 A;  4ZG7 A;  2W5T A;  1E2S P;  2W5V A;  2X98 A;  1Y7A A;  2GSU A;  4KM4 A;  5EGH A;  1ALJ A;  3NKN A;  4GTX A;  4CYS A;  3BDF A;  4YR1 A;  3NVL A;  2W5S A;  3IGZ B;  1P49 A; 
#chains in the Genus database with same CATH topology
 2W5R A;  5GOV A;  1ANJ A;  1HJK A;  1KHK A;  1ELY A;  3MK1 A;  2IUC A;  4LRC A;  1EJJ A;  4ZG6 A;  1O98 A;  1SHN A;  1ED8 A;  1KH5 A;  1ZED A;  5TJ3 A;  3OT9 A;  3CMR A;  4LRA A;  2G9Y A;  4LRD A;  4NWJ A;  4CXU A;  5L0K A;  3WAW A;  1KHN A;  1ELX A;  3T02 A;  5L0B A;  2XRG A;  1K7H A;  3NKM A;  4CXS A;  3M8W A;  5LIA A;  1KH4 A;  1URB A;  5LQQ A;  2W8S A;  1KH7 A;  5DLW A;  5LRN A;  3MK0 A;  5DLT A;  2ZKT A;  4GTW A;  4LR2 A;  1N2L A;  3A52 A;  4LQY A;  2QZU A;  4UPL A;  4LRB A;  3UN3 A;  3UN2 A;  1ED9 A;  3IDD A;  4NWX A;  1URA A;  3SZY A;  4FDI A;  3M8Y A;  3WBH A;  2IUC B;  3NKP A;  1ZEF A;  4QAX A;  3DPC A;  5IJQ A;  5L0E A;  1ALK A;  3BDG A;  1KH9 A;  1ALI A;  1EI6 A;  3NKQ A;  3TX0 A;  1ANI A;  1ELZ A;  1B8J A;  2GA3 A;  4B56 A;  4KAV A;  4UPK A;  1EW9 A;  4LRE A;  3T00 A;  1AJC A;  3WAV A;  2GSO A;  1Y6V A;  5AJ9 A;  3NKO A;  3TWZ A;  4UOO A;  4TN0 A;  4CYR A;  4MHX A;  1O99 A;  3M7V A;  1AJD A;  3E2D A;  3MK2 A;  5HRT A;  3UO0 A;  2D1G A;  3B5Q A;  4MY4 A;  1SHQ A;  4UPH A;  3SZZ A;  1E3C P;  4FDJ A;  5DLV A;  1EW8 A;  2XR9 A;  3IGY B;  4CXK A;  4KJD A;  4MIV A;  1HQA A;  2GLQ A;  1E33 P;  1HDH A;  5IJS A;  5K4P A;  3NKR A;  4UOR A;  4LR7 A;  1AUK A;  2W5Q A;  3BDG B;  4GTY A;  3T01 A;  2GSN A;  2W5W A;  3TG0 A;  3WAY A;  1ZEB A;  1ALH A;  4UOP A;  4LR8 A;  3M8Z A;  1FSU A;  2ANH A;  2VQR A;  3WAX A;  4LR9 A;  2RH6 A;  2W5X A;  5KXA A;  5INH A;  1AJB A;  1EQJ A;  1E1Z P;  1AJA A;  1EW2 A;  4N7T A;  4GTZ A;  4ZGA A;  1KHL A;  4UPI A;  3ED4 A;  5EGE A;  3UNY A;  3Q3Q A;  5C66 A;  3KD8 A;  1KHJ A;  3BDH A;  5GRR A;  3DYC A;  4KAY A;  4KJG A;  4ZG9 A;  2IFY A;  2W8D A;  5LRM A;  1N2K A;  3LXQ A;  4LRF A;  3UN5 A;  4ZG7 A;  2W5T A;  1E2S P;  2W5V A;  2X98 A;  1Y7A A;  2GSU A;  4KM4 A;  5EGH A;  1ALJ A;  3NKN A;  4GTX A;  4CYS A;  3BDF A;  4YR1 A;  3NVL A;  2W5S A;  3IGZ B;  1P49 A; 
#chains in the Genus database with same CATH homology
 2W5R A;  5GOV A;  1ANJ A;  1HJK A;  1KHK A;  1ELY A;  3MK1 A;  2IUC A;  4LRC A;  1EJJ A;  4ZG6 A;  1O98 A;  1SHN A;  1ED8 A;  1KH5 A;  1ZED A;  5TJ3 A;  3OT9 A;  3CMR A;  4LRA A;  2G9Y A;  4LRD A;  4NWJ A;  4CXU A;  5L0K A;  3WAW A;  1KHN A;  1ELX A;  3T02 A;  5L0B A;  2XRG A;  1K7H A;  3NKM A;  4CXS A;  3M8W A;  5LIA A;  1KH4 A;  1URB A;  5LQQ A;  2W8S A;  1KH7 A;  5DLW A;  5LRN A;  3MK0 A;  5DLT A;  2ZKT A;  4GTW A;  4LR2 A;  1N2L A;  3A52 A;  4LQY A;  2QZU A;  4UPL A;  4LRB A;  3UN3 A;  3UN2 A;  1ED9 A;  3IDD A;  4NWX A;  1URA A;  3SZY A;  4FDI A;  3M8Y A;  3WBH A;  2IUC B;  3NKP A;  1ZEF A;  4QAX A;  3DPC A;  5IJQ A;  5L0E A;  1ALK A;  3BDG A;  1KH9 A;  1ALI A;  1EI6 A;  3NKQ A;  3TX0 A;  1ANI A;  1ELZ A;  1B8J A;  2GA3 A;  4B56 A;  4KAV A;  4UPK A;  1EW9 A;  4LRE A;  3T00 A;  1AJC A;  3WAV A;  2GSO A;  1Y6V A;  5AJ9 A;  3NKO A;  3TWZ A;  4UOO A;  4TN0 A;  4CYR A;  4MHX A;  1O99 A;  3M7V A;  1AJD A;  3E2D A;  3MK2 A;  5HRT A;  3UO0 A;  2D1G A;  3B5Q A;  4MY4 A;  1SHQ A;  4UPH A;  3SZZ A;  1E3C P;  4FDJ A;  5DLV A;  1EW8 A;  2XR9 A;  3IGY B;  4CXK A;  4KJD A;  4MIV A;  1HQA A;  2GLQ A;  1E33 P;  1HDH A;  5IJS A;  5K4P A;  3NKR A;  4UOR A;  4LR7 A;  1AUK A;  2W5Q A;  3BDG B;  4GTY A;  3T01 A;  2GSN A;  2W5W A;  3TG0 A;  3WAY A;  1ZEB A;  1ALH A;  4UOP A;  4LR8 A;  3M8Z A;  1FSU A;  2ANH A;  2VQR A;  3WAX A;  4LR9 A;  2RH6 A;  2W5X A;  5KXA A;  5INH A;  1AJB A;  1EQJ A;  1E1Z P;  1AJA A;  1EW2 A;  4N7T A;  4GTZ A;  4ZGA A;  1KHL A;  4UPI A;  3ED4 A;  5EGE A;  3UNY A;  3Q3Q A;  5C66 A;  3KD8 A;  1KHJ A;  3BDH A;  5GRR A;  3DYC A;  4KAY A;  4KJG A;  4ZG9 A;  2IFY A;  2W8D A;  5LRM A;  1N2K A;  3LXQ A;  4LRF A;  3UN5 A;  4ZG7 A;  2W5T A;  1E2S P;  2W5V A;  2X98 A;  1Y7A A;  2GSU A;  4KM4 A;  5EGH A;  1ALJ A;  3NKN A;  4GTX A;  4CYS A;  3BDF A;  4YR1 A;  3NVL A;  2W5S A;  3IGZ B;  1P49 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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