1KHOA

Crystal structure analysis of clostridium perfringens alpha-toxin isolated from avian strain swcp
Total Genus 141
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
370
structure length
370
Chain Sequence
WDGKADGTGTHAMIATQGVTILENDLSSNEPEVIRNNLEILKQNMHDLQLGSTYPDYDKNAYDLYQDHFWDPDTDNNFTKDSKWYLSYSIPDTAESQIRKFSALARYEWKRGNYKQATFYLGEAMHYFGDADTPYHAANVTAVDSPGHVKFETFAEDRKDQYKINTTGSKTNDAFYSNILTNEDFNSWSKEFARSFAKTAKDLYYSHANMSCSWDEWDYAAKVALANSQKGTSGYIYRFLHDVSDGKDSSANKNVNELVAYITTGGEKYAGTDDYMYFGIKTKDGQTQEWTMDNPGNDFMTGSQDTYTFKLKDKNLKIDDIQNMWIRKSKYTEFGDDYKPANIKVIANGNVVLNKDINEWISGNSTYNIK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Toxin
molecule keywords alpha-toxin
publication title The first strain of Clostridium perfringens isolated from an avian source has an alpha-toxin with divergent structural and kinetic properties.
pubmed doi rcsb
source organism Clostridium perfringens
total genus 141
structure length 370
sequence length 370
chains with identical sequence B
ec nomenclature ec 3.1.4.3: Phospholipase C.
pdb deposition date 2001-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00882 Zn_dep_PLPC Zinc dependent phospholipase C
A PF01477 PLAT PLAT/LH2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.575.10 Mainly Alpha Orthogonal Bundle P1 Nuclease P1 Nuclease 1khoA01
2.60.60.20 Mainly Beta Sandwich Lipoxygenase-1 PLAT/LH2 domain 1khoA02
1LPBB 1P6DA 1Y4KA 3V99A 2WY6A 4WHAA 1HU9A 1RRLA 4CWMA 1FGMA 2FNQA 2SBLA 1QMDA 3SNGA 2OXEA 1LPAB 1P5XA 5FBCA 3VF1A 2P0MA 1JNQA 2IUKA 5FBDA 1GPLA 1F8NA 1GYGA 3BNEA 4DJ4A 5FBGA 1QM6A 3V92A 2HUCA 2WXUA 3V98A 5FBAA 4QWTA 3BNBA 1KHOA 5FBFA 2FFZA 1YGEA 1IK3A 2WXTA 1P6EA 5FB9A 1AH7A 1N8SA 3CWZB 1HPLA 1FGTA 1FGQA 1ETHA 1LOXA 3FG4A 4CXVA 4NREA 4CXPA 3O8YA 2FGNA 1RRHA 4JDGA 1N8QA 3FG3A 1OLPA 2IUJA 1RP1A 4WFOA 3W52A 2PVSA 1LNHA 1FGRA 1ROVA 3FG1A 5EEOA 1W52X 1BU8A 3BNCA 1AK0A 1FGOA 1CA1A 2PPLA 4CXOA 3BNDA 3PZWA 1NO3A 5FBBA
chains in the Genus database with same CATH superfamily
1LPBB 1P6DA 1Y4KA 3IBZA 3V99A 2WY6A 4WHAA 1HU9A 1RRLA 2LG7A 4CWMA 1FGMA 2QZ7A 2QNGA 2FNQA 2SBLA 2XFEA 1QMDA 3SNGA 2LRGA 2KXVA 2OXEA 1LPAB 1P5XA 5FBCA 3VF1A 2P0MA 1JNQA 2KXTA 2IUKA 5FBDA 2XFDA 1GPLA 4QEYA 1F8NA 1GYGA 3BNEA 4DJ4A 5FBGA 1QM6A 3V92A 2LGEA 2HUCA 2WXUA 3U6GA 3V98A 5FBAA 4QWTA 3BNBA 1KHOA 5FBFA 2FFZA 1YGEA 2XHJA 1IK3A 2WXTA 2XHHA 1P6EA 5FB9A 1AH7A 1N8SA 3CWZB 1HPLA 1FGTA 1FGQA 1ETHA 1LOXA 3FG4A 4CXVA 4NREA 4CXPA 3O8YA 2FGNA 1RRHA 4JDGA 1N8QA 3FG3A 1OLPA 2IUJA 1RP1A 4WFOA 3W52A 2PVSA 1LNHA 1FGRA 1ROVA 3FG1A 5EEOA 1W52X 1BU8A 3BNCA 1AK0A 1FGOA 1CA1A 2PPLA 4CXOA 3BNDA 3PZWA 1NO3A 5FBBA
chains in the Genus database with same CATH topology
1LPBB 1P6DA 1Y4KA 3V99A 2WY6A 4WHAA 1HU9A 1RRLA 4CWMA 1FGMA 2FNQA 2SBLA 1QMDA 3SNGA 2OXEA 1LPAB 1P5XA 5FBCA 3VF1A 2P0MA 1JNQA 2IUKA 5FBDA 1GPLA 1F8NA 1GYGA 3BNEA 4DJ4A 5FBGA 1QM6A 3V92A 2HUCA 2WXUA 3V98A 5FBAA 4QWTA 3BNBA 1KHOA 5FBFA 2FFZA 1YGEA 1IK3A 2WXTA 1P6EA 5FB9A 1AH7A 1N8SA 3CWZB 1HPLA 1FGTA 1FGQA 1ETHA 1LOXA 3FG4A 4CXVA 4NREA 4CXPA 3O8YA 2FGNA 1RRHA 4JDGA 1N8QA 3FG3A 1OLPA 2IUJA 1RP1A 4WFOA 3W52A 2PVSA 1LNHA 1FGRA 1ROVA 3FG1A 5EEOA 1W52X 1BU8A 3BNCA 1AK0A 1FGOA 1CA1A 2PPLA 4CXOA 3BNDA 3PZWA 1NO3A 5FBBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LPB B;  1P6D A;  1Y4K A;  3V99 A;  2WY6 A;  4WHA A;  1HU9 A;  1RRL A;  4CWM A;  1FGM A;  2FNQ A;  2SBL A;  1QMD A;  3SNG A;  2OXE A;  1LPA B;  1P5X A;  5FBC A;  3VF1 A;  2P0M A;  1JNQ A;  2IUK A;  5FBD A;  1GPL A;  1F8N A;  1GYG A;  3BNE A;  4DJ4 A;  5FBG A;  1QM6 A;  3V92 A;  2HUC A;  2WXU A;  3V98 A;  5FBA A;  4QWT A;  3BNB A;  1KHO A;  5FBF A;  2FFZ A;  1YGE A;  1IK3 A;  2WXT A;  1P6E A;  5FB9 A;  1AH7 A;  1N8S A;  3CWZ B;  1HPL A;  1FGT A;  1FGQ A;  1ETH A;  1LOX A;  3FG4 A;  4CXV A;  4NRE A;  4CXP A;  3O8Y A;  2FGN A;  1RRH A;  4JDG A;  1N8Q A;  3FG3 A;  1OLP A;  2IUJ A;  1RP1 A;  4WFO A;  3W52 A;  2PVS A;  1LNH A;  1FGR A;  1ROV A;  3FG1 A;  5EEO A;  1W52 X;  1BU8 A;  3BNC A;  1AK0 A;  1FGO A;  1CA1 A;  2PPL A;  4CXO A;  3BND A;  3PZW A;  1NO3 A;  5FBB A; 
#chains in the Genus database with same CATH topology
 1LPB B;  1P6D A;  1Y4K A;  3IBZ A;  3V99 A;  2WY6 A;  4WHA A;  1HU9 A;  1RRL A;  2LG7 A;  4CWM A;  1FGM A;  2QZ7 A;  2QNG A;  2FNQ A;  2SBL A;  2XFE A;  1QMD A;  3SNG A;  2LRG A;  2KXV A;  2OXE A;  1LPA B;  1P5X A;  5FBC A;  3VF1 A;  2P0M A;  1JNQ A;  2KXT A;  2IUK A;  5FBD A;  2XFD A;  1GPL A;  4QEY A;  1F8N A;  1GYG A;  3BNE A;  4DJ4 A;  5FBG A;  1QM6 A;  3V92 A;  2LGE A;  2HUC A;  2WXU A;  3U6G A;  3V98 A;  5FBA A;  4QWT A;  3BNB A;  1KHO A;  5FBF A;  2FFZ A;  1YGE A;  2XHJ A;  1IK3 A;  2WXT A;  2XHH A;  1P6E A;  5FB9 A;  1AH7 A;  1N8S A;  3CWZ B;  1HPL A;  1FGT A;  1FGQ A;  1ETH A;  1LOX A;  3FG4 A;  4CXV A;  4NRE A;  4CXP A;  3O8Y A;  2FGN A;  1RRH A;  4JDG A;  1N8Q A;  3FG3 A;  1OLP A;  2IUJ A;  1RP1 A;  4WFO A;  3W52 A;  2PVS A;  1LNH A;  1FGR A;  1ROV A;  3FG1 A;  5EEO A;  1W52 X;  1BU8 A;  3BNC A;  1AK0 A;  1FGO A;  1CA1 A;  2PPL A;  4CXO A;  3BND A;  3PZW A;  1NO3 A;  5FBB A; 
#chains in the Genus database with same CATH homology
 1LPB B;  1P6D A;  1Y4K A;  3V99 A;  2WY6 A;  4WHA A;  1HU9 A;  1RRL A;  4CWM A;  1FGM A;  2FNQ A;  2SBL A;  1QMD A;  3SNG A;  2OXE A;  1LPA B;  1P5X A;  5FBC A;  3VF1 A;  2P0M A;  1JNQ A;  2IUK A;  5FBD A;  1GPL A;  1F8N A;  1GYG A;  3BNE A;  4DJ4 A;  5FBG A;  1QM6 A;  3V92 A;  2HUC A;  2WXU A;  3V98 A;  5FBA A;  4QWT A;  3BNB A;  1KHO A;  5FBF A;  2FFZ A;  1YGE A;  1IK3 A;  2WXT A;  1P6E A;  5FB9 A;  1AH7 A;  1N8S A;  3CWZ B;  1HPL A;  1FGT A;  1FGQ A;  1ETH A;  1LOX A;  3FG4 A;  4CXV A;  4NRE A;  4CXP A;  3O8Y A;  2FGN A;  1RRH A;  4JDG A;  1N8Q A;  3FG3 A;  1OLP A;  2IUJ A;  1RP1 A;  4WFO A;  3W52 A;  2PVS A;  1LNH A;  1FGR A;  1ROV A;  3FG1 A;  5EEO A;  1W52 X;  1BU8 A;  3BNC A;  1AK0 A;  1FGO A;  1CA1 A;  2PPL A;  4CXO A;  3BND A;  3PZW A;  1NO3 A;  5FBB A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...