The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
149
|
sequence length |
411
|
structure length |
411
|
Chain Sequence |
MKIKQALFTAGYSSFYFDDQQAIKNGAGHDGFIYTGDPVTPGFTSVRQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHIKPLLEGRDVDAFLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATALASGRLKTEVVCDEWQLPCVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALLQT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Insights into enzyme evolution revealed by the structure of methylaspartate ammonia lyase.
pubmed doi rcsb |
molecule keywords |
3-METHYLASPARTATE AMMONIA-LYASE
|
molecule tags |
Lyase
|
source organism |
Citrobacter amalonaticus
|
total genus |
149
|
structure length |
411
|
sequence length |
411
|
chains with identical sequence |
B
|
ec nomenclature |
ec
4.3.1.2: Methylaspartate ammonia-lyase. |
pdb deposition date | 2001-12-10 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF05034 | MAAL_N | Methylaspartate ammonia-lyase N-terminus |
A | PF07476 | MAAL_C | Methylaspartate ammonia-lyase C-terminus |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Enolase-like C-terminal domain | ||
Alpha Beta | 2-Layer Sandwich | Enolase-like; domain 1 | Enolase-like, N-terminal domain |