1KMPA

Crystal structure of the outer membrane transporter feca complexed with ferric citrate
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
647
structure length
647
Chain Sequence
NDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPVSLGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPKETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEADMPGGLSRADYDADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGKRITLSPRNYWVRGIEPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYDRDTRSGTEAHAWYLDDKIDIGNWTITPGMRFEHIESYQNNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGTRYDDGALTAEMGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVDYKPGNWTFNLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGARVAYDFGPQMADLNLAFGVKNIFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein
molecule keywords IRON(III) DICITRATE TRANSPORT PROTEIN FECA
publication title Structural basis of gating by the outer membrane transporter FecA.
pubmed doi rcsb
source organism Escherichia coli k12
total genus 183
structure length 647
sequence length 647
ec nomenclature
pdb deposition date 2001-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07660 STN Secretin and TonB N terminus short domain
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 1kmpA02
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 1kmpA01
4RDTA 3RGMA 2W6TA 3M8BA 4AIQA 2W6UA 2W75A 1BY5A 3RGNA 2IAHA 3DDRA 2W77A 5FOKA 2GRXA 1QJQA 1PNZA 2O5PA 3V8XA 2GUFA 1PO0A 2YSUA 3CSLA 3CSNA 1NQFA 1NQEA 1KMPA 2GSKA 2HDFA 3EFMA 2W78A 4CU4A 1PO3A 2HDIA 1XKHA 2FCPA 3V89A 1KMOA 4RDRA 3QLBA 3FHHA 4B7OA 1UJWA 1FEPA 1QFFA 1FI1A 1BY3A 1NQHA 1XKWA 4EPAA 1FCPA 1QKCA 1NQGA 4AIPA 3M8DA 2W76A 2W16A 1QFGA
chains in the Genus database with same CATH superfamily
4RDTA 3RGMA 2W6TA 3M8BA 4AIQA 1MPRA 1JBIA 2W6UA 2W75A 2MPRA 1BY5A 3RGNA 2IAHA 1OH2Q 3DDRA 2W77A 5FOKA 1MPMA 2GRXA 1QJQA 1PNZA 2O5PA 3V8XA 2GUFA 1PO0A 2YSUA 3CSLA 1AF6A 3CSNA 1NQFA 1NQEA 1KMPA 1MPQA 1OH2P 2GSKA 2HDFA 3EFMA 1MALA 2W78A 4CU4A 1PO3A 2HDIA 1XKHA 2FCPA 3V89A 1A0TP 1KMOA 4RDRA 3QLBA 3FHHA 1A0SP 4B7OA 1UJWA 1FEPA 1QFFA 1BY3A 1FI1A 1NQHA 1XKWA 1MPOA 1FCPA 4EPAA 1QKCA 1NQGA 4AIPA 3M8DA 2W76A 2W16A 1QFGA 1MPNA
chains in the Genus database with same CATH topology
4RDTA 3RGMA 2W6TA 3M8BA 4AIQA 2W6UA 2W75A 1BY5A 3RGNA 2IAHA 3DDRA 2W77A 5FOKA 2GRXA 1QJQA 1PNZA 2O5PA 3V8XA 2GUFA 1PO0A 2YSUA 3CSLA 3CSNA 1NQFA 1NQEA 1KMPA 2GSKA 2HDFA 3EFMA 2W78A 4CU4A 1PO3A 2HDIA 1XKHA 2FCPA 3V89A 1KMOA 4RDRA 3QLBA 3FHHA 4B7OA 1UJWA 1FEPA 1QFFA 1FI1A 1BY3A 1NQHA 1XKWA 4EPAA 1FCPA 1QKCA 1NQGA 4AIPA 3M8DA 2W76A 2W16A 1QFGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RDT A;  3RGM A;  2W6T A;  3M8B A;  4AIQ A;  2W6U A;  2W75 A;  1BY5 A;  3RGN A;  2IAH A;  3DDR A;  2W77 A;  5FOK A;  2GRX A;  1QJQ A;  1PNZ A;  2O5P A;  3V8X A;  2GUF A;  1PO0 A;  2YSU A;  3CSL A;  3CSN A;  1NQF A;  1NQE A;  1KMP A;  2GSK A;  2HDF A;  3EFM A;  2W78 A;  4CU4 A;  1PO3 A;  2HDI A;  1XKH A;  2FCP A;  3V89 A;  1KMO A;  4RDR A;  3QLB A;  3FHH A;  4B7O A;  1UJW A;  1FEP A;  1QFF A;  1FI1 A;  1BY3 A;  1NQH A;  1XKW A;  4EPA A;  1FCP A;  1QKC A;  1NQG A;  4AIP A;  3M8D A;  2W76 A;  2W16 A;  1QFG A; 
#chains in the Genus database with same CATH topology
 4RDT A;  3RGM A;  2W6T A;  3M8B A;  4AIQ A;  1MPR A;  1JBI A;  2W6U A;  2W75 A;  2MPR A;  1BY5 A;  3RGN A;  2IAH A;  1OH2 Q;  3DDR A;  2W77 A;  5FOK A;  1MPM A;  2GRX A;  1QJQ A;  1PNZ A;  2O5P A;  3V8X A;  2GUF A;  1PO0 A;  2YSU A;  3CSL A;  1AF6 A;  3CSN A;  1NQF A;  1NQE A;  1KMP A;  1MPQ A;  1OH2 P;  2GSK A;  2HDF A;  3EFM A;  1MAL A;  2W78 A;  4CU4 A;  1PO3 A;  2HDI A;  1XKH A;  2FCP A;  3V89 A;  1A0T P;  1KMO A;  4RDR A;  3QLB A;  3FHH A;  1A0S P;  4B7O A;  1UJW A;  1FEP A;  1QFF A;  1BY3 A;  1FI1 A;  1NQH A;  1XKW A;  1MPO A;  1FCP A;  4EPA A;  1QKC A;  1NQG A;  4AIP A;  3M8D A;  2W76 A;  2W16 A;  1QFG A;  1MPN A; 
#chains in the Genus database with same CATH homology
 4RDT A;  3RGM A;  2W6T A;  3M8B A;  4AIQ A;  2W6U A;  2W75 A;  1BY5 A;  3RGN A;  2IAH A;  3DDR A;  2W77 A;  5FOK A;  2GRX A;  1QJQ A;  1PNZ A;  2O5P A;  3V8X A;  2GUF A;  1PO0 A;  2YSU A;  3CSL A;  3CSN A;  1NQF A;  1NQE A;  1KMP A;  2GSK A;  2HDF A;  3EFM A;  2W78 A;  4CU4 A;  1PO3 A;  2HDI A;  1XKH A;  2FCP A;  3V89 A;  1KMO A;  4RDR A;  3QLB A;  3FHH A;  4B7O A;  1UJW A;  1FEP A;  1QFF A;  1FI1 A;  1BY3 A;  1NQH A;  1XKW A;  4EPA A;  1FCP A;  1QKC A;  1NQG A;  4AIP A;  3M8D A;  2W76 A;  2W16 A;  1QFG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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