1KQ6A

P47phox px domain
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
140
structure length
140
Chain Sequence
GDTFIRHIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPDDLKLPTDNQTKKPETYLM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords neutrophil cytosol factor 1
publication title p47phox PX domain
rcsb
source organism Homo sapiens
molecule tags Protein binding
total genus 33
structure length 140
sequence length 140
ec nomenclature
pdb deposition date 2002-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 1kq6A00
2RAJA 3LUIA 4BGJA 2L73A 1H6HA 2WWEA 1OCSA 4P2JA 2RAIA 1KQ6A 4AKVA 2CSKA 1GD5A 4IKBB 4HASA 2RAKA 4ON3A 3P0CA 1KMDA 3IQ2A 3HPCX 3FOGA 4AZ9A 4IKDA 1XTNA 4PQPA 2DYBA 2V6VA 4PQOA 3DYTA 4OXWA 3HPBA 2V14A 1O7KA 2I4KA 1XTEA 4PZGA 2ETTA 2IWLX 2REDA 2CZOA 4IKBA 2YPSA 4P2IA 2AR5A 1OCUA 2REAA
chains in the Genus database with same CATH superfamily
2RAJA 3LUIA 4BGJA 2L73A 1H6HA 2WWEA 1OCSA 4P2JA 2RAIA 1KQ6A 4AKVA 2CSKA 1GD5A 4IKBB 4HASA 2RAKA 4ON3A 3P0CA 1KMDA 3IQ2A 3HPCX 3FOGA 4AZ9A 4IKDA 1XTNA 4PQPA 2DYBA 2V6VA 4PQOA 3DYTA 4OXWA 3HPBA 2V14A 1O7KA 2I4KA 1XTEA 4PZGA 2ETTA 2IWLX 2REDA 2CZOA 4IKBA 2YPSA 4P2IA 2AR5A 1OCUA 2REAA
chains in the Genus database with same CATH topology
2RAJA 3LUIA 4BGJA 2L73A 1H6HA 2WWEA 1OCSA 4P2JA 2RAIA 1KQ6A 4AKVA 2CSKA 1GD5A 4IKBB 4HASA 2RAKA 4ON3A 3P0CA 1KMDA 3IQ2A 3HPCX 3FOGA 4AZ9A 4IKDA 1XTNA 4PQPA 2DYBA 2V6VA 4PQOA 3DYTA 4OXWA 3HPBA 2V14A 1O7KA 2I4KA 1XTEA 4PZGA 2ETTA 2IWLX 2REDA 2CZOA 4IKBA 2YPSA 4P2IA 2AR5A 1OCUA 2REAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RAJ A;  3LUI A;  4BGJ A;  2L73 A;  1H6H A;  2WWE A;  1OCS A;  4P2J A;  2RAI A;  1KQ6 A;  4AKV A;  2CSK A;  1GD5 A;  4IKB B;  4HAS A;  2RAK A;  4ON3 A;  3P0C A;  1KMD A;  3IQ2 A;  3HPC X;  3FOG A;  4AZ9 A;  4IKD A;  1XTN A;  4PQP A;  2DYB A;  2V6V A;  4PQO A;  3DYT A;  4OXW A;  3HPB A;  2V14 A;  1O7K A;  2I4K A;  1XTE A;  4PZG A;  2ETT A;  2IWL X;  2RED A;  2CZO A;  4IKB A;  2YPS A;  4P2I A;  2AR5 A;  1OCU A;  2REA A; 
#chains in the Genus database with same CATH topology
 2RAJ A;  3LUI A;  4BGJ A;  2L73 A;  1H6H A;  2WWE A;  1OCS A;  4P2J A;  2RAI A;  1KQ6 A;  4AKV A;  2CSK A;  1GD5 A;  4IKB B;  4HAS A;  2RAK A;  4ON3 A;  3P0C A;  1KMD A;  3IQ2 A;  3HPC X;  3FOG A;  4AZ9 A;  4IKD A;  1XTN A;  4PQP A;  2DYB A;  2V6V A;  4PQO A;  3DYT A;  4OXW A;  3HPB A;  2V14 A;  1O7K A;  2I4K A;  1XTE A;  4PZG A;  2ETT A;  2IWL X;  2RED A;  2CZO A;  4IKB A;  2YPS A;  4P2I A;  2AR5 A;  1OCU A;  2REA A; 
#chains in the Genus database with same CATH homology
 2RAJ A;  3LUI A;  4BGJ A;  2L73 A;  1H6H A;  2WWE A;  1OCS A;  4P2J A;  2RAI A;  1KQ6 A;  4AKV A;  2CSK A;  1GD5 A;  4IKB B;  4HAS A;  2RAK A;  4ON3 A;  3P0C A;  1KMD A;  3IQ2 A;  3HPC X;  3FOG A;  4AZ9 A;  4IKD A;  1XTN A;  4PQP A;  2DYB A;  2V6V A;  4PQO A;  3DYT A;  4OXW A;  3HPB A;  2V14 A;  1O7K A;  2I4K A;  1XTE A;  4PZG A;  2ETT A;  2IWL X;  2RED A;  2CZO A;  4IKB A;  2YPS A;  4P2I A;  2AR5 A;  1OCU A;  2REA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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