1KQSE

The haloarcula marismortui 50s complexed with a pretranslocational intermediate in protein synthesis
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits.
pubmed rcsb
molecule tags Ribosome
molecule keywords 23S RRNA
total genus 39
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2002-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1kqsE01
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1kqsE02
4WF9E 1VQLE 5GAEG 1YIJE 1RL6A 1K73G 4IO9E 3PIPE 1VQ4E 3CF5E 1VQME 5JVHE 1VQ7E 3I55E 1YJWE 1Q81G 3G6EE 3G71E 1VQNE 3CCQE 1YITE 1Q86G 1VQ6E 5GAGG 4IOCE 1S72E 1VQ5E 1W2BE 3CC7E 3I56E 3CCEE 5DM7E 3DLLE 5DM6E 3CCVE 1YI2E 2ZJRE 2ZJPE 3G4SE 1KC8G 5AN9B 3CXCE 5JVGE 1YJNE 1KQSE 3J7ZG 3CCUE 1M1KG 2ZJQE 2OTLE 3CD6E 3CPWE 3CCLE 1Q7YG 1VQPE 1YJ9E 3OW2E 3CMEE 1JJ2E 2QA4E 5GADG 1Q82G 5HL7E 4U67E 3CC2E 3CC4E 4WFNE 1N8RG 1QVFE 3CCJE 1M90G 4IOAE 1VQ8E 1VQOE 2QEXE 1KD1G 1VQKE 5H1SI 3PIOE 3CCSE 1YHQE 3CMAE 4WFBE 1VQ9E 2OTJE 4WFAE 1NJIG 5MLCH 1K9MG 2CQLA 4UY8G 1K8AG 4WCEE 3CCME 3CCRE 1QVGE 5GAHG
chains in the Genus database with same CATH superfamily
4WF9E 1VQLE 5GAEG 1YIJE 1RL6A 1K73G 4IO9E 3PIPE 1VQ4E 3EC5A 3CF5E 1VQME 2HKDA 5JVHE 1VQ7E 2AF5A 3I55E 1YJWE 1Q81G 2OL8O 3G6EE 3G71E 1VQNE 3CCQE 3CKGA 5B11O 1YITE 1Q86G 1VQ6E 5GAGG 4IOCE 1S72E 2G8CO 1VQ5E 1W2BE 3CC7E 3I56E 3CCEE 5DM7E 3DLLE 5DM6E 3CCVE 1YI2E 2I5VO 2ZJRE 2ZJPE 2FKJA 3G4SE 1KC8G 3AUMO 5AN9B 3CXCE 5JVGE 1YJNE 1KQSE 1P4PA 1FJ1E 3J7ZG 3CCUE 1M1KG 2ZJQE 2OTLE 3CD6E 3CPWE 3CCLE 1Q7YG 3IGEA 1VQPE 1YJ9E 3OW2E 3CMEE 1JJ2E 2I5ZO 3CKFA 2QA4E 2OY1O 2OL6O 5GADG 1Q82G 5HL7E 4U67E 5B10O 3CC2E 3CC4E 4WFNE 2PI3O 2OY8A 1N8RG 2OYBO 1QVFE 3CCJE 1M90G 5B2AO 4IOAE 1VQ8E 1VQOE 2QEXE 2FKGA 1KD1G 1VQKE 3IG9A 5H1SI 1OSPO 3PIOE 3CCSE 1YHQE 3CMAE 4WFBE 1VQ9E 2OTJE 4WFAE 1NJIG 5MLCH 1K9MG 2CQLA 4UY8G 1K8AG 5B3MO 2OL7A 4WCEE 3CCME 1RJLC 3CCRE 1QVGE 5GAHG 2OY5O 2OY7A
chains in the Genus database with same CATH topology
4WF9E 1VQLE 5GAEG 1YIJE 1RL6A 1K73G 4IO9E 3PIPE 1VQ4E 3CF5E 1VQME 5JVHE 1VQ7E 3I55E 1YJWE 1Q81G 3G6EE 3G71E 1VQNE 3CCQE 1YITE 1Q86G 1VQ6E 5GAGG 4IOCE 1S72E 1VQ5E 1W2BE 3CC7E 3I56E 3CCEE 5DM7E 3DLLE 5DM6E 3CCVE 1YI2E 2ZJRE 2ZJPE 3G4SE 1KC8G 5AN9B 3CXCE 5JVGE 1YJNE 1KQSE 3J7ZG 3CCUE 1M1KG 2ZJQE 2OTLE 3CD6E 3CPWE 3CCLE 1Q7YG 1VQPE 1YJ9E 3OW2E 3CMEE 1JJ2E 2QA4E 5GADG 1Q82G 5HL7E 4U67E 3CC2E 3CC4E 4WFNE 1N8RG 1QVFE 3CCJE 1M90G 4IOAE 1VQ8E 1VQOE 2QEXE 1KD1G 1VQKE 5H1SI 3PIOE 3CCSE 1YHQE 3CMAE 4WFBE 1VQ9E 2OTJE 4WFAE 1NJIG 5MLCH 1K9MG 2CQLA 4UY8G 1K8AG 4WCEE 3CCME 3CCRE 1QVGE 5GAHG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WF9 E;  1VQL E;  5GAE G;  1YIJ E;  1RL6 A;  1K73 G;  4IO9 E;  3PIP E;  1VQ4 E;  3CF5 E;  1VQM E;  5JVH E;  1VQ7 E;  3I55 E;  1YJW E;  1Q81 G;  3G6E E;  3G71 E;  1VQN E;  3CCQ E;  1YIT E;  1Q86 G;  1VQ6 E;  5GAG G;  4IOC E;  1S72 E;  1VQ5 E;  1W2B E;  3CC7 E;  3I56 E;  3CCE E;  5DM7 E;  3DLL E;  5DM6 E;  3CCV E;  1YI2 E;  2ZJR E;  2ZJP E;  3G4S E;  1KC8 G;  5AN9 B;  3CXC E;  5JVG E;  1YJN E;  1KQS E;  3J7Z G;  3CCU E;  1M1K G;  2ZJQ E;  2OTL E;  3CD6 E;  3CPW E;  3CCL E;  1Q7Y G;  1VQP E;  1YJ9 E;  3OW2 E;  3CME E;  1JJ2 E;  2QA4 E;  5GAD G;  1Q82 G;  5HL7 E;  4U67 E;  3CC2 E;  3CC4 E;  4WFN E;  1N8R G;  1QVF E;  3CCJ E;  1M90 G;  4IOA E;  1VQ8 E;  1VQO E;  2QEX E;  1KD1 G;  1VQK E;  5H1S I;  3PIO E;  3CCS E;  1YHQ E;  3CMA E;  4WFB E;  1VQ9 E;  2OTJ E;  4WFA E;  1NJI G;  5MLC H;  1K9M G;  2CQL A;  4UY8 G;  1K8A G;  4WCE E;  3CCM E;  3CCR E;  1QVG E;  5GAH G; 
#chains in the Genus database with same CATH topology
 4WF9 E;  1VQL E;  5GAE G;  1YIJ E;  1RL6 A;  1K73 G;  4IO9 E;  3PIP E;  1VQ4 E;  3EC5 A;  3CF5 E;  1VQM E;  2HKD A;  5JVH E;  1VQ7 E;  2AF5 A;  3I55 E;  1YJW E;  1Q81 G;  2OL8 O;  3G6E E;  3G71 E;  1VQN E;  3CCQ E;  3CKG A;  5B11 O;  1YIT E;  1Q86 G;  1VQ6 E;  5GAG G;  4IOC E;  1S72 E;  2G8C O;  1VQ5 E;  1W2B E;  3CC7 E;  3I56 E;  3CCE E;  5DM7 E;  3DLL E;  5DM6 E;  3CCV E;  1YI2 E;  2I5V O;  2ZJR E;  2ZJP E;  2FKJ A;  3G4S E;  1KC8 G;  3AUM O;  5AN9 B;  3CXC E;  5JVG E;  1YJN E;  1KQS E;  1P4P A;  1FJ1 E;  3J7Z G;  3CCU E;  1M1K G;  2ZJQ E;  2OTL E;  3CD6 E;  3CPW E;  3CCL E;  1Q7Y G;  3IGE A;  1VQP E;  1YJ9 E;  3OW2 E;  3CME E;  1JJ2 E;  2I5Z O;  3CKF A;  2QA4 E;  2OY1 O;  2OL6 O;  5GAD G;  1Q82 G;  5HL7 E;  4U67 E;  5B10 O;  3CC2 E;  3CC4 E;  4WFN E;  2PI3 O;  2OY8 A;  1N8R G;  2OYB O;  1QVF E;  3CCJ E;  1M90 G;  5B2A O;  4IOA E;  1VQ8 E;  1VQO E;  2QEX E;  2FKG A;  1KD1 G;  1VQK E;  3IG9 A;  5H1S I;  1OSP O;  3PIO E;  3CCS E;  1YHQ E;  3CMA E;  4WFB E;  1VQ9 E;  2OTJ E;  4WFA E;  1NJI G;  5MLC H;  1K9M G;  2CQL A;  4UY8 G;  1K8A G;  5B3M O;  2OL7 A;  4WCE E;  3CCM E;  1RJL C;  3CCR E;  1QVG E;  5GAH G;  2OY5 O;  2OY7 A; 
#chains in the Genus database with same CATH homology
 4WF9 E;  1VQL E;  5GAE G;  1YIJ E;  1RL6 A;  1K73 G;  4IO9 E;  3PIP E;  1VQ4 E;  3CF5 E;  1VQM E;  5JVH E;  1VQ7 E;  3I55 E;  1YJW E;  1Q81 G;  3G6E E;  3G71 E;  1VQN E;  3CCQ E;  1YIT E;  1Q86 G;  1VQ6 E;  5GAG G;  4IOC E;  1S72 E;  1VQ5 E;  1W2B E;  3CC7 E;  3I56 E;  3CCE E;  5DM7 E;  3DLL E;  5DM6 E;  3CCV E;  1YI2 E;  2ZJR E;  2ZJP E;  3G4S E;  1KC8 G;  5AN9 B;  3CXC E;  5JVG E;  1YJN E;  1KQS E;  3J7Z G;  3CCU E;  1M1K G;  2ZJQ E;  2OTL E;  3CD6 E;  3CPW E;  3CCL E;  1Q7Y G;  1VQP E;  1YJ9 E;  3OW2 E;  3CME E;  1JJ2 E;  2QA4 E;  5GAD G;  1Q82 G;  5HL7 E;  4U67 E;  3CC2 E;  3CC4 E;  4WFN E;  1N8R G;  1QVF E;  3CCJ E;  1M90 G;  4IOA E;  1VQ8 E;  1VQO E;  2QEX E;  1KD1 G;  1VQK E;  5H1S I;  3PIO E;  3CCS E;  1YHQ E;  3CMA E;  4WFB E;  1VQ9 E;  2OTJ E;  4WFA E;  1NJI G;  5MLC H;  1K9M G;  2CQL A;  4UY8 G;  1K8A G;  4WCE E;  3CCM E;  3CCR E;  1QVG E;  5GAH G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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