1KSJB

Complex of arl2 and pde delta, crystal form 2 (semet)
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
149
structure length
140
Chain Sequence
SAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKVYFKGQLEEWFFEFGFVIPNSTNTWQSLIEPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/hydrolase
molecule keywords arf-like protein 2
publication title The complex of Arl2-GTP and PDE delta: from structure to function
pubmed doi rcsb
source organism Mus musculus
total genus 32
structure length 140
sequence length 149
ec nomenclature ec 3.1.4.17: 3',5'-cyclic-nucleotide phosphodiesterase.
pdb deposition date 2002-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF05351 GMP_PDE_delta GMP-PDE, delta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.40 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 GMP phosphodiesterase, delta subunit 1ksjB00
5TARB 1KSHB 4GOJC 4JVBB 3T5IA 5TB5B 5E80A 4GOKC 5E8FA 4JHPB 4JVFB 1KSJB 1KSGB 5L7KA 5F2UA 3GQQA 4JV6B 4JV8B 3T5GB 3RBQA
chains in the Genus database with same CATH superfamily
2JHYA 5TARB 3ZUDA 2JHUA 1FSOA 5ACHA 1KSHB 5HNOA 5FJQA 4JVBB 4ALTA 1AJWA 5ACGA 2JHZA 4OY6A 2JHVA 4JVFB 4B5QA 3EIIA 4EISA 1FSTA 4D7VA 4GBOA 5ACIA 2LHSA 4JV6B 5HGUA 2BEMA 1FT3A 4OY8A 1RHOA 4ALCA 1GDFA 4F38B 2YETA 1FT0A 5DQ8A 5ACFA 2JHXA 5TB5B 1QVYA 2YOYA 4QI8A 3EJAA 4JHPB 1KSGB 3UAMA 2VTCA 5AA7A 2BENA 4MAIA 2YOXA 4JV8B 2XWXA 1DOAB 3RBQA 2JI0A 4FMRA 4EISB 2JHSA 5E80A 4GOKC 4OY7A 5FTZA 5L7KA 4EIRA 3GQQA 4RE1A 2R5OA 3JUAA 4ALEA 5DQEA 3T5GB 3KYSA 4A02A 5FOHA 4ALSA 4ALRA 4ALQA 2BXWA 5EMVA 4GOJC 3L15A 4D7UA 5IJUA 3T5IA 1HH4D 2YOWA 5E8FA 1KMTA 2JHWA 4LN0A 1DS6B 1KSJB 2JHTA 5HNPA 5ACJA 5F2UA 4MAHA 5EMWA
chains in the Genus database with same CATH topology
5TARB 1KSHB 4GOJC 4JVBB 3T5IA 5TB5B 5E80A 4GOKC 5E8FA 4JHPB 4JVFB 1KSJB 1KSGB 5L7KA 5F2UA 3GQQA 4JV6B 4JV8B 3T5GB 3RBQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5TAR B;  1KSH B;  4GOJ C;  4JVB B;  3T5I A;  5TB5 B;  5E80 A;  4GOK C;  5E8F A;  4JHP B;  4JVF B;  1KSJ B;  1KSG B;  5L7K A;  5F2U A;  3GQQ A;  4JV6 B;  4JV8 B;  3T5G B;  3RBQ A; 
#chains in the Genus database with same CATH topology
 2JHY A;  5TAR B;  3ZUD A;  2JHU A;  1FSO A;  5ACH A;  1KSH B;  5HNO A;  5FJQ A;  4JVB B;  4ALT A;  1AJW A;  5ACG A;  2JHZ A;  4OY6 A;  2JHV A;  4JVF B;  4B5Q A;  3EII A;  4EIS A;  1FST A;  4D7V A;  4GBO A;  5ACI A;  2LHS A;  4JV6 B;  5HGU A;  2BEM A;  1FT3 A;  4OY8 A;  1RHO A;  4ALC A;  1GDF A;  4F38 B;  2YET A;  1FT0 A;  5DQ8 A;  5ACF A;  2JHX A;  5TB5 B;  1QVY A;  2YOY A;  4QI8 A;  3EJA A;  4JHP B;  1KSG B;  3UAM A;  2VTC A;  5AA7 A;  2BEN A;  4MAI A;  2YOX A;  4JV8 B;  2XWX A;  1DOA B;  3RBQ A;  2JI0 A;  4FMR A;  4EIS B;  2JHS A;  5E80 A;  4GOK C;  4OY7 A;  5FTZ A;  5L7K A;  4EIR A;  3GQQ A;  4RE1 A;  2R5O A;  3JUA A;  4ALE A;  5DQE A;  3T5G B;  3KYS A;  4A02 A;  5FOH A;  4ALS A;  4ALR A;  4ALQ A;  2BXW A;  5EMV A;  4GOJ C;  3L15 A;  4D7U A;  5IJU A;  3T5I A;  1HH4 D;  2YOW A;  5E8F A;  1KMT A;  2JHW A;  4LN0 A;  1DS6 B;  1KSJ B;  2JHT A;  5HNP A;  5ACJ A;  5F2U A;  4MAH A;  5EMW A; 
#chains in the Genus database with same CATH homology
 5TAR B;  1KSH B;  4GOJ C;  4JVB B;  3T5I A;  5TB5 B;  5E80 A;  4GOK C;  5E8F A;  4JHP B;  4JVF B;  1KSJ B;  1KSG B;  5L7K A;  5F2U A;  3GQQ A;  4JV6 B;  4JV8 B;  3T5G B;  3RBQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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