1KSKA

Structure of rsua
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
234
structure length
234
Chain Sequence
GSHMRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords RIBOSOMAL SMALL SUBUNIT PSEUDOURIDINE SYNTHASE A
publication title Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP.
pubmed rcsb
source organism Escherichia coli
total genus 56
structure length 234
sequence length 234
ec nomenclature ec 5.4.99.19: 16S rRNA pseudouridine(516) synthase.
pdb deposition date 2002-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00849 PseudoU_synth_2 RNA pseudouridylate synthase
A PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 1kskA01
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1kskA02
2I82A 1ZE1A 3KBGA 4DV1D 1H3FA 1KSKA 5LMND 4DUZD 4K0KD 4LFCD 1SGVA 1P9KA 4B3TD 1FKAD 4DV3D 4YY3D 4JI3D 1XMQD 1R3FA 5IWAD 4JI4D 4LF5D 4JI5D 4LF6D 3HJYA 1N33D 4JI1D 1C05A 1VIOA 2EY4A 2ISTA 4LF7D 2AB4A 2F4VD 1HNWD 4DV2D 2HHHD 4OUDA 3T1YD 4GKJD 4LGTA 1N36D 1XNQD 1KSLA 4X65D 2ZM6D 4X62D 4DR4D 1DM9A 1QYUA 4JV5D 3T1HD 1XPIA 4JI8D 1ZL3A 4B3SD 2E5LD 4DV0D 1V9FA 4GKKD 2APOA 3UAIA 2KTLA 2VQED 2UXDD 1HNXD 2UUBD 1ZE2A 1FJGD 4DR6D 4LFAD 1R3EA 1HR0D 1N34D 2UXCD 4JI7D 4OX9D 1C06A 2K6PA 3HJWA 2UUAD 4JYAD 4NXMD 2AUSA 3OTOD 4DV4D 4DV5D 4LF8D 4DUYD 1V9KA 3LWOA 4DV6D 4DR7D 3HP7A 4DR2D 3LWQA 4DR5D 4LF4D 1K8WA 5LMUD 2UU9D 4LFBD 4B3MD 4DR3D 3HAXA 5BR8D 1HNZD 1I94D 1JH3A 2RFKA 3LWRA 1XNRD 1IBKD 3MQKA 4JI0D 4NXND 4LABA 2HVYA 1KSVA 2VQFD 4KHPD 2UUCD 4LF9D 1N32D 3LWVA 4X66D 4DV7D 4DR1D 1J5ED 4YHHD 1H3EA 1IBLD 2JANA 4B3RD 3LWPA 4X64D 1IBMD 4JI2D 4AQYD 3U28A 2UXBD 1XMOD 4JI6D 3DH3A 1PRZA
chains in the Genus database with same CATH superfamily
2I82A 1ZE1A 3KBGA 4DV1D 1H3FA 4NNJA 1Y8XB 1KSKA 3JAME 5LMND 4DUZD 4K0KD 3FN1A 3KYCB 4LFCD 1SGVA 1P9KA 4B3TD 3ONGA 1FKAD 4DV3D 4YY3D 4JI3D 3J7AF 1Z2ZA 1XMQD 1R3FA 3ONHA 5IWAD 4JI4D 4LF5D 4JI5D 4LF6D 3HJYA 1N33D 4JI1D 1C05A 1VIOA 3J80E 2ISTA 4LF7D 2EY4A 2F4VD 1HNWD 4DV2D 2AB4A 2HHHD 4OUDA 3CMMA 3T1YD 4GKJD 1SB7A 4LGTA 3J81E 1SZWA 1N36D 1XNQD 2ZTBA 1Y8QB 1KSLA 2I1SA 5FQ2B 4X65D 2ZM6D 4X62D 4DR4D 1DM9A 1QYUA 4JV5D 3T1HD 5LL6S 1XPIA 4JI8D 1ZL3A 4B3SD 5KNLA 5FLXE 4DV0D 2E5LD 1V9FA 4GKKD 2APOA 3UAIA 2KTLA 2VQED 2UXDD 1HNXD 2UUBD 1ZE2A 1FJGD 4DR6D 4LFAD 1R3EA 1HR0D 1N34D 2UXCD 4JI7D 4OX9D 1C06A 2K6PA 3HJWA 2UUAD 4JYAD 4NXMD 2AUSA 3OTOD 4II3A 4DV4D 4DV5D 1Y8RB 2LQ7A 4II2A 5A2QE 5IT9E 4LF8D 4DUYD 1V9KA 3LWOA 4DV6D 4DR7D 3HP7A 4DR2D 3LWQA 4DR5D 4LF4D 1K8WA 1SI7A 5LMUD 2UU9D 4LFBD 4B3MD 4DR3D 3HAXA 5BR8D 1HNZD 1I94D 1JH3A 2RFKA 3LWRA 1XNRD 2NVUB 1IBKD 3MQKA 4JI0D 4NXND 3KYDB 4LABA 2HVYA 1KSVA 2VQFD 4KHPD 2UUCD 4LF9D 1N32D 3LWVA 4X66D 4DV7D 4DR1D 4W5VB 4YHHD 1J5ED 1H3EA 1IBLD 2JANA 4B3RD 3LWPA 4X64D 1IBMD 4JI2D 4AQYD 3U28A 2UXBD 1XMOD 4JI6D 3DH3A 1PRZA
chains in the Genus database with same CATH topology
2I82A 1ZE1A 3KBGA 4DV1D 1H3FA 1KSKA 5LMND 4DUZD 4K0KD 4LFCD 1SGVA 1P9KA 4B3TD 1FKAD 4DV3D 4YY3D 4JI3D 1Z2ZA 1XMQD 1R3FA 5IWAD 4JI4D 4LF5D 4JI5D 4LF6D 3HJYA 1N33D 4JI1D 1C05A 1VIOA 2EY4A 2ISTA 4LF7D 2AB4A 2F4VD 1HNWD 4DV2D 2HHHD 4OUDA 3T1YD 4GKJD 1SB7A 4LGTA 1SZWA 1N36D 1XNQD 1KSLA 4X65D 2ZM6D 4X62D 4DR4D 1DM9A 1QYUA 4JV5D 3T1HD 1XPIA 4JI8D 1ZL3A 4B3SD 2E5LD 4DV0D 1V9FA 4GKKD 2APOA 3UAIA 2KTLA 2VQED 2UXDD 1HNXD 2UUBD 1ZE2A 1FJGD 4DR6D 4LFAD 1R3EA 1HR0D 1N34D 2UXCD 4JI7D 4OX9D 1C06A 2K6PA 3HJWA 2UUAD 4JYAD 4NXMD 2AUSA 3OTOD 4DV4D 4DV5D 4LF8D 4DUYD 1V9KA 3LWOA 4DV6D 4DR7D 3HP7A 4DR2D 3LWQA 4DR5D 4LF4D 1K8WA 1SI7A 5LMUD 2UU9D 4LFBD 4B3MD 4DR3D 3HAXA 5BR8D 1HNZD 1I94D 1JH3A 2RFKA 3LWRA 1XNRD 1IBKD 3MQKA 4JI0D 4NXND 4LABA 2HVYA 1KSVA 2VQFD 4KHPD 2UUCD 4LF9D 1N32D 3LWVA 4X66D 4DV7D 4DR1D 1J5ED 4YHHD 1H3EA 1IBLD 2JANA 4B3RD 3LWPA 4X64D 1IBMD 4JI2D 4AQYD 3U28A 2UXBD 1XMOD 4JI6D 3DH3A 1PRZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I82 A;  1ZE1 A;  3KBG A;  4DV1 D;  1H3F A;  1KSK A;  5LMN D;  4DUZ D;  4K0K D;  4LFC D;  1SGV A;  1P9K A;  4B3T D;  1FKA D;  4DV3 D;  4YY3 D;  4JI3 D;  1XMQ D;  1R3F A;  5IWA D;  4JI4 D;  4LF5 D;  4JI5 D;  4LF6 D;  3HJY A;  1N33 D;  4JI1 D;  1C05 A;  1VIO A;  2EY4 A;  2IST A;  4LF7 D;  2AB4 A;  2F4V D;  1HNW D;  4DV2 D;  2HHH D;  4OUD A;  3T1Y D;  4GKJ D;  4LGT A;  1N36 D;  1XNQ D;  1KSL A;  4X65 D;  2ZM6 D;  4X62 D;  4DR4 D;  1DM9 A;  1QYU A;  4JV5 D;  3T1H D;  1XPI A;  4JI8 D;  1ZL3 A;  4B3S D;  2E5L D;  4DV0 D;  1V9F A;  4GKK D;  2APO A;  3UAI A;  2KTL A;  2VQE D;  2UXD D;  1HNX D;  2UUB D;  1ZE2 A;  1FJG D;  4DR6 D;  4LFA D;  1R3E A;  1HR0 D;  1N34 D;  2UXC D;  4JI7 D;  4OX9 D;  1C06 A;  2K6P A;  3HJW A;  2UUA D;  4JYA D;  4NXM D;  2AUS A;  3OTO D;  4DV4 D;  4DV5 D;  4LF8 D;  4DUY D;  1V9K A;  3LWO A;  4DV6 D;  4DR7 D;  3HP7 A;  4DR2 D;  3LWQ A;  4DR5 D;  4LF4 D;  1K8W A;  5LMU D;  2UU9 D;  4LFB D;  4B3M D;  4DR3 D;  3HAX A;  5BR8 D;  1HNZ D;  1I94 D;  1JH3 A;  2RFK A;  3LWR A;  1XNR D;  1IBK D;  3MQK A;  4JI0 D;  4NXN D;  4LAB A;  2HVY A;  1KSV A;  2VQF D;  4KHP D;  2UUC D;  4LF9 D;  1N32 D;  3LWV A;  4X66 D;  4DV7 D;  4DR1 D;  1J5E D;  4YHH D;  1H3E A;  1IBL D;  2JAN A;  4B3R D;  3LWP A;  4X64 D;  1IBM D;  4JI2 D;  4AQY D;  3U28 A;  2UXB D;  1XMO D;  4JI6 D;  3DH3 A;  1PRZ A; 
#chains in the Genus database with same CATH topology
 2I82 A;  1ZE1 A;  3KBG A;  4DV1 D;  1H3F A;  4NNJ A;  1Y8X B;  1KSK A;  3JAM E;  5LMN D;  4DUZ D;  4K0K D;  3FN1 A;  3KYC B;  4LFC D;  1SGV A;  1P9K A;  4B3T D;  3ONG A;  1FKA D;  4DV3 D;  4YY3 D;  4JI3 D;  3J7A F;  1Z2Z A;  1XMQ D;  1R3F A;  3ONH A;  5IWA D;  4JI4 D;  4LF5 D;  4JI5 D;  4LF6 D;  3HJY A;  1N33 D;  4JI1 D;  1C05 A;  1VIO A;  3J80 E;  2IST A;  4LF7 D;  2EY4 A;  2F4V D;  1HNW D;  4DV2 D;  2AB4 A;  2HHH D;  4OUD A;  3CMM A;  3T1Y D;  4GKJ D;  1SB7 A;  4LGT A;  3J81 E;  1SZW A;  1N36 D;  1XNQ D;  2ZTB A;  1Y8Q B;  1KSL A;  2I1S A;  5FQ2 B;  4X65 D;  2ZM6 D;  4X62 D;  4DR4 D;  1DM9 A;  1QYU A;  4JV5 D;  3T1H D;  5LL6 S;  1XPI A;  4JI8 D;  1ZL3 A;  4B3S D;  5KNL A;  5FLX E;  4DV0 D;  2E5L D;  1V9F A;  4GKK D;  2APO A;  3UAI A;  2KTL A;  2VQE D;  2UXD D;  1HNX D;  2UUB D;  1ZE2 A;  1FJG D;  4DR6 D;  4LFA D;  1R3E A;  1HR0 D;  1N34 D;  2UXC D;  4JI7 D;  4OX9 D;  1C06 A;  2K6P A;  3HJW A;  2UUA D;  4JYA D;  4NXM D;  2AUS A;  3OTO D;  4II3 A;  4DV4 D;  4DV5 D;  1Y8R B;  2LQ7 A;  4II2 A;  5A2Q E;  5IT9 E;  4LF8 D;  4DUY D;  1V9K A;  3LWO A;  4DV6 D;  4DR7 D;  3HP7 A;  4DR2 D;  3LWQ A;  4DR5 D;  4LF4 D;  1K8W A;  1SI7 A;  5LMU D;  2UU9 D;  4LFB D;  4B3M D;  4DR3 D;  3HAX A;  5BR8 D;  1HNZ D;  1I94 D;  1JH3 A;  2RFK A;  3LWR A;  1XNR D;  2NVU B;  1IBK D;  3MQK A;  4JI0 D;  4NXN D;  3KYD B;  4LAB A;  2HVY A;  1KSV A;  2VQF D;  4KHP D;  2UUC D;  4LF9 D;  1N32 D;  3LWV A;  4X66 D;  4DV7 D;  4DR1 D;  4W5V B;  4YHH D;  1J5E D;  1H3E A;  1IBL D;  2JAN A;  4B3R D;  3LWP A;  4X64 D;  1IBM D;  4JI2 D;  4AQY D;  3U28 A;  2UXB D;  1XMO D;  4JI6 D;  3DH3 A;  1PRZ A; 
#chains in the Genus database with same CATH homology
 2I82 A;  1ZE1 A;  3KBG A;  4DV1 D;  1H3F A;  1KSK A;  5LMN D;  4DUZ D;  4K0K D;  4LFC D;  1SGV A;  1P9K A;  4B3T D;  1FKA D;  4DV3 D;  4YY3 D;  4JI3 D;  1Z2Z A;  1XMQ D;  1R3F A;  5IWA D;  4JI4 D;  4LF5 D;  4JI5 D;  4LF6 D;  3HJY A;  1N33 D;  4JI1 D;  1C05 A;  1VIO A;  2EY4 A;  2IST A;  4LF7 D;  2AB4 A;  2F4V D;  1HNW D;  4DV2 D;  2HHH D;  4OUD A;  3T1Y D;  4GKJ D;  1SB7 A;  4LGT A;  1SZW A;  1N36 D;  1XNQ D;  1KSL A;  4X65 D;  2ZM6 D;  4X62 D;  4DR4 D;  1DM9 A;  1QYU A;  4JV5 D;  3T1H D;  1XPI A;  4JI8 D;  1ZL3 A;  4B3S D;  2E5L D;  4DV0 D;  1V9F A;  4GKK D;  2APO A;  3UAI A;  2KTL A;  2VQE D;  2UXD D;  1HNX D;  2UUB D;  1ZE2 A;  1FJG D;  4DR6 D;  4LFA D;  1R3E A;  1HR0 D;  1N34 D;  2UXC D;  4JI7 D;  4OX9 D;  1C06 A;  2K6P A;  3HJW A;  2UUA D;  4JYA D;  4NXM D;  2AUS A;  3OTO D;  4DV4 D;  4DV5 D;  4LF8 D;  4DUY D;  1V9K A;  3LWO A;  4DV6 D;  4DR7 D;  3HP7 A;  4DR2 D;  3LWQ A;  4DR5 D;  4LF4 D;  1K8W A;  1SI7 A;  5LMU D;  2UU9 D;  4LFB D;  4B3M D;  4DR3 D;  3HAX A;  5BR8 D;  1HNZ D;  1I94 D;  1JH3 A;  2RFK A;  3LWR A;  1XNR D;  1IBK D;  3MQK A;  4JI0 D;  4NXN D;  4LAB A;  2HVY A;  1KSV A;  2VQF D;  4KHP D;  2UUC D;  4LF9 D;  1N32 D;  3LWV A;  4X66 D;  4DV7 D;  4DR1 D;  1J5E D;  4YHH D;  1H3E A;  1IBL D;  2JAN A;  4B3R D;  3LWP A;  4X64 D;  1IBM D;  4JI2 D;  4AQY D;  3U28 A;  2UXB D;  1XMO D;  4JI6 D;  3DH3 A;  1PRZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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