1KSYA

Crystal structures of two intermediates in the assembly of the papillomavirus replication initiation complex
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
145
structure length
145
Chain Sequence
ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANMLNVREECLMLQPPKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Replication/dna
molecule keywords E1 Recognition Sequence, Strand 1
publication title Crystal structures of two intermediates in the assembly of the papillomavirus replication initiation complex.
pubmed doi rcsb
source organism Bovine papillomavirus
total genus 41
structure length 145
sequence length 145
chains with identical sequence B, C
ec nomenclature ec 3.6.4.12: DNA helicase.
pdb deposition date 2002-01-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1310.10 Alpha Beta 3-Layer(aba) Sandwich Replication Protein E1; Chain: A, Replication Protein E1; Chain: A, 1ksyA00
1R9WA 1F08A 1KSYA 1KSXA
chains in the Genus database with same CATH superfamily
2FUFA 1F08A 4U87A 1M55A 4ZO0A 1UUTA 2TBDA 4FGNA 2IF9A 4KW3A 3QN2A 1L2MA 1TBDA 5DCXA 1R9WA 5CYNA 5D9IA 1L5IA 3QFQA 5BYGA 1KSXA 3DKYA 4ZQ9A 4LIFA 2ITJA 2NTCA 2HW0A 2NL8A 3QK2A 2IPRA 4NBPA 4LMDA 3DKXA 1Z1DB 2ITLA 4GDFA 1RZ9A 4FB3A 1KSYA
chains in the Genus database with same CATH topology
2FUFA 1F08A 4U87A 1M55A 4ZO0A 1UUTA 2TBDA 4FGNA 2IF9A 4KW3A 3QN2A 1L2MA 1TBDA 5DCXA 1R9WA 5CYNA 5D9IA 1L5IA 3QFQA 5BYGA 1KSXA 3DKYA 4ZQ9A 4LIFA 2ITJA 2NTCA 2HW0A 2NL8A 3QK2A 2IPRA 4NBPA 4LMDA 3DKXA 1Z1DB 2ITLA 4GDFA 1RZ9A 4FB3A 1KSYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R9W A;  1F08 A;  1KSY A;  1KSX A; 
#chains in the Genus database with same CATH topology
 2FUF A;  1F08 A;  4U87 A;  1M55 A;  4ZO0 A;  1UUT A;  2TBD A;  4FGN A;  2IF9 A;  4KW3 A;  3QN2 A;  1L2M A;  1TBD A;  5DCX A;  1R9W A;  5CYN A;  5D9I A;  1L5I A;  3QFQ A;  5BYG A;  1KSX A;  3DKY A;  4ZQ9 A;  4LIF A;  2ITJ A;  2NTC A;  2HW0 A;  2NL8 A;  3QK2 A;  2IPR A;  4NBP A;  4LMD A;  3DKX A;  1Z1D B;  2ITL A;  4GDF A;  1RZ9 A;  4FB3 A;  1KSY A; 
#chains in the Genus database with same CATH homology
 2FUF A;  1F08 A;  4U87 A;  1M55 A;  4ZO0 A;  1UUT A;  2TBD A;  4FGN A;  2IF9 A;  4KW3 A;  3QN2 A;  1L2M A;  1TBD A;  5DCX A;  1R9W A;  5CYN A;  5D9I A;  1L5I A;  3QFQ A;  5BYG A;  1KSX A;  3DKY A;  4ZQ9 A;  4LIF A;  2ITJ A;  2NTC A;  2HW0 A;  2NL8 A;  3QK2 A;  2IPR A;  4NBP A;  4LMD A;  3DKX A;  1Z1D B;  2ITL A;  4GDF A;  1RZ9 A;  4FB3 A;  1KSY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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