1KVVA

Solution structure of protein srp19 of the archaeoglobus fulgidus signal recognition particle, minimized average structure
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
104
structure length
104
Chain Sequence
MKESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWWEEGGRVVVEKRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords SRP19
publication title Solution structure of protein SRP19 of Archaeoglobus fulgidus signal recognition particle.
pubmed doi rcsb
source organism Archaeoglobus fulgidus
total genus 20
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2002-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 1kvvA00
3NDBA 3DLUA 1L9AA 5M73B 1MFQB 4P3EB 1KVNA 2V3CA 3DLVA 1KVVA 3KTWA 1JIDA 3KTVB 1LNGA 4XCOA
chains in the Genus database with same CATH superfamily
3NDBA 4P74A 3USHA 1L9AA 4P72A 4P75A 4TVAB 1JIDA 1PYSB 2EJUA 3KTVB 3AXTA 1EIYB 2RHSB 2RHQB 2LQ3A 4DDWA 4DDVA 3KTWA 2HG7A 4IOHA 4P73A 3AXSA 1LNGA 3HFZB 2CXIA 3DLUA 1MFQB 5M73B 1B70B 3L4GB 3TEHB 4DDTA 3DLVA 1KVVA 2DULA 1JJCB 4P71A 2AMCB 1KVNA 3PCOB 4DDUA 4XCOA 4P3EB 2AKWB 2V3CA 1ND9A 2YTZA 2IY5B 2EJTA 1B7YB 2ALYB
chains in the Genus database with same CATH topology
3NDBA 3DLUA 1L9AA 5M73B 1MFQB 4P3EB 1KVNA 2V3CA 3DLVA 1KVVA 3KTWA 1JIDA 3KTVB 1LNGA 4XCOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NDB A;  3DLU A;  1L9A A;  5M73 B;  1MFQ B;  4P3E B;  1KVN A;  2V3C A;  3DLV A;  1KVV A;  3KTW A;  1JID A;  3KTV B;  1LNG A;  4XCO A; 
#chains in the Genus database with same CATH topology
 3NDB A;  4P74 A;  3USH A;  1L9A A;  4P72 A;  4P75 A;  4TVA B;  1JID A;  1PYS B;  2EJU A;  3KTV B;  3AXT A;  1EIY B;  2RHS B;  2RHQ B;  2LQ3 A;  4DDW A;  4DDV A;  3KTW A;  2HG7 A;  4IOH A;  4P73 A;  3AXS A;  1LNG A;  3HFZ B;  2CXI A;  3DLU A;  1MFQ B;  5M73 B;  1B70 B;  3L4G B;  3TEH B;  4DDT A;  3DLV A;  1KVV A;  2DUL A;  1JJC B;  4P71 A;  2AMC B;  1KVN A;  3PCO B;  4DDU A;  4XCO A;  4P3E B;  2AKW B;  2V3C A;  1ND9 A;  2YTZ A;  2IY5 B;  2EJT A;  1B7Y B;  2ALY B; 
#chains in the Genus database with same CATH homology
 3NDB A;  3DLU A;  1L9A A;  5M73 B;  1MFQ B;  4P3E B;  1KVN A;  2V3C A;  3DLV A;  1KVV A;  3KTW A;  1JID A;  3KTV B;  1LNG A;  4XCO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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