The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
145
|
sequence length |
580
|
structure length |
580
|
Chain Sequence |
MRRTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQLRELGLMVVRP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Comparative analysis of space-grown and earth-grown crystals of an aminoacyl-tRNA synthetase: space-grown crystals are more useful for structural determination.
pubmed doi rcsb |
molecule tags |
Ligase
|
source organism |
Thermus thermophilus
|
molecule keywords |
Aspartyl-tRNA synthetase
|
total genus |
145
|
structure length |
580
|
sequence length |
580
|
chains with identical sequence |
B
|
ec nomenclature |
ec
6.1.1.12: Aspartate--tRNA ligase. |
pdb deposition date | 2002-02-14 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF00152 | tRNA-synt_2 | tRNA synthetases class II (D, K and N) |
A | PF01336 | tRNA_anti-codon | OB-fold nucleic acid binding domain |
A | PF02938 | GAD | GAD domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | ||
Alpha Beta | 2-Layer Sandwich | BirA Bifunctional Protein; domain 2 | Bira Bifunctional Protein; Domain 2 | ||
Alpha Beta | 2-Layer Sandwich | Gyrase A; domain 2 | GAD-like domain |
#chains in the Genus database with same CATH superfamily 1JJ2 A; 4JI5 Q; 3KFU A; 2IHE A; 5IWA L; 1L2F A; 4YCV A; 2JA8 G; 3G1Z A; 2Q7H A; 4DV0 L; 4OXP A; 2LXJ A; 1IXR A; 4BY7 H; 2GVB A; 4OON A; 3GTJ H; 4IFD G; 1BVS A; 4IPD A; 3UFG A; 2PI2 E; 3PIO A; 1XPR A; 4DUZ L; 3TRE A; 2E64 A; 4A3G G; 3HKS A; 1K8A C; 4WF2 A; 2A8V A; 2NVT H; 2N78 A; 1YFR A; 4HJA A; 4MNO A; 2EAY A; 3PF5 A; 4KLK A; 2BA1 A; 3BZK A; 1HC7 A; 4A3E G; 2VZA A; 1T9H A; 3BJU A; 2JA6 H; 1CKO A; 2DUD A; 2YTY A; 1Z7N A; 2R92 H; 2J3L A; 4KR2 A; 2B63 H; 1SR3 A; 2AWO A; 2YYZ A; 4NB3 A; 1HTT A; 3K7U C; 3SGI A; 5IYB H; 1X56 A; 1PH4 A; 3GTG H; 4DV1 Q; 2BH2 A; 1HXD A; 3HOX H; 4LF6 Q; 3L0O A; 2DVE A; 3TS0 A; 1S40 A; 2VUM H; 5C52 B; 3J81 i; 3I56 A; 3FHW A; 2OTL A; 2E5L Q; 1KAW A; 1EIF A; 2ZIN A; 4B3R L; 4JBK A; 5C0X J; 4JI6 Q; 4LNQ A; 3I4N H; 3FJP A; 1HNZ L; 4JI3 L; 5F5W A; 2DXT A; 2K5H A; 3S1M H; 1ADJ A; 3VQX A; 3MEY A; 4JYA L; 1N32 Q; 1HR0 W; 3V7R A; 5C4J H; 2HT1 A; 1N36 Q; 4B3M L; 3ICE A; 1E7Z A; 4DV7 Q; 4UPA A; 2D6F C; 4X65 Q; 4ME3 A; 3HXY A; 1PH2 A; 1V1Q A; 2NN6 G; 3GTO H; 3L1A A; 1CSP A; 4A3K G; 4YRE A; 3M4P A; 3S15 H; 3CAM A; 1RL2 A; 4JBW A; 5C0X G; 2Y0S E; 2PMZ E; 4WJ3 M; 4JG2 A; 3I4M G; 5C3E G; 1BBW A; 2I4O A; 1KL9 A; 2IX0 A; 1H4V B; 3V8J A; 4H02 A; 4JCV E; 3TRZ A; 2JA7 G; 1KMN A; 1WNL A; 2BH8 A; 2R7Z G; 1SFO H; 3A31 A; 5ELO A; 4P73 C; 4OWX B; 3A32 A; 1VQG A; 2E5A A; 2AWN A; 2WP8 J; 2QHT A; 5IYC G; 5JJL A; 3M3Y H; 1PA6 A; 2WFW A; 4CH4 A; 4WI1 A; 2HIX A; 3J80 i; 3RR5 A; 1NMG A; 2A1A A; 1X54 A; 2IY5 B; 4ZIB A; 4G85 A; 3A7R A; 3I7F A; 4OX9 Q; 4XU0 A; 1QF6 A; 3MF2 A; 1BBU A; 2UU9 L; 4TVW A; 1USY A; 4H2U A; 1SRU A; 1TWG H; 1YGB A; 2YU9 H; 2Z0S A; 2E2H H; 1QZH A; 3KJO A; 3K8A A; 1SLJ A; 3M4O H; 3CPF A; 4DV2 Q; 3ERS X; 4MTN A; 4YWK A; 1HNX Q; 4DV5 Q; 4YRJ A; 3KDF A; 2C8M A; 2YV5 A; 3D0F A; 1KRT A; 3PCO B; 1E24 A; 4GN4 B; 4Y52 H; 2PI2 A; 2NVY H; 2I4L A; 4YHH L; 3KF6 A; 4A3M H; 3RZO H; 4KI0 A; 4YP0 A; 1Q86 C; 5C53 B; 4OWW B; 1XMO L; 4LF8 Q; 1H4S A; 4X5O A; 4IJH A; 4L5Q A; 1YNX A; 1PYS B; 1IZ6 A; 1AH9 A; 4NXN L; 2EJG A; 3H0G G; 1NMF A; 5LMN W; 2WAQ G; 2KCT A; 3VQY A; 3HOV H; 1N9W A; 5GAH C; 2PNH A; 3WWV A; 1Q7Y C; 4YRI A; 1EQR A; 4BBS H; 3CP0 A; 3HOU G; 1HZ9 A; 1P16 A; 1J5E L; 2UXC Q; 2VY3 A; 3GTL H; 4BW9 A; 1Y1V G; 1N8R C; 1VQB A; 2I4M A; 3LSQ A; 2E10 A; 1C9O A; 5M5X H; 4HVC A; 4A4I A; 4DR3 Q; 1I94 Q; 3FKI H; 4EX5 A; 4XTC S; 4A3B H; 5C51 B; 3HKZ E; 1X9N A; 2VL6 A; 2CJ9 A; 1B76 A; 5M3M H; 1SET A; 4RDX A; 1H95 A; 1Z7M A; 4JI2 Q; 5IP7 G; 2G4C A; 1VQ4 A; 1KXL A; 4YWL A; 4H2X B; 3J7A 5; 3PUZ A; 4TQD A; 4DR2 Q; 5IT9 c; 1VQH A; 4GN5 A; 4P3N A; 2ZZF A; 4GKK Q; 4X62 L; 3NBH B; 4A3F G; 1N34 Q; 3ICA A; 2ZJQ A; 1K8G A; 4DR5 Q; 3ULJ A; 1K73 C; 5LMU Q; 3HOZ G; 3PUY A; 4JI4 Q; 3ULL A; 3PO3 H; 1IBL L; 3PGZ A; 2RF4 A; 3RLN A; 1YHQ A; 4AYB G; 1K0R A; 4LF7 L; 4HIO A; 3HXU A; 4DR6 Q; 4AQY Q; 3CD6 A; 2JA5 G; 4DQ2 A; 1K83 H; 1KD1 C; 1XTD A; 3S17 H; 2VNU D; 1EUJ A; 3D31 A; 2CGH A; 1VQ5 A; 1FJG L; 4POG A; 2FXQ A; 1YJN A; 4OLF A; 2I4N A; 1MJE A; 1X3E A; 5K36 G; 2JQO A; 2ATW A; 4C2M H; 4DK3 C; 3S24 A; 1U0L A; 4KHP L; 1IBM L; 4A93 H; 2MO1 A; 3J80 c; 4JI7 L; 2OQK A; 2ID0 A; 5JJK A; 1VQM A; 1USY C; 2ZT8 A; 1PYS A; 1E1T A; 2F4V L; 4A3I G; 2FYK A; 3V8L A; 4CS3 A; 1OXX K; 2CFM A; 4R4C A; 3RAC A; 3RKX A; 4BA2 I; 4DV6 Q; 3M85 A; 1PH3 A; 1NJ1 A; 3P8V A; 3H3V H; 1PH6 A; 4P74 A; 3OTO Q; 2PQA A; 3GTQ H; 3L7Z C; 4PMW A; 4YRN A; 2EJ9 A; 4JI8 L; 4DV4 L; 4DR7 L; 2ZM6 Q; 3HXV A; 2AHO B; 4HID A; 2AMC A; 4ZTZ B; 4B3T L; 2HIV A; 2ZTE A; 4LFC L; 4GNX A; 3CMQ A; 1Z47 A; 4A3J G; 1D8L A; 3PO2 G; 1EIY B; 5GAD C; 4DNI A; 3CCQ A; 2UUA L; 1EYG A; 2ZJP A; 1WQ7 A; 1X3G A; 3CCV A; 1HH2 P; 4A3L G; 1QUQ A; 4YDQ A; 4JC0 A; 1CKM A; 4ZTU B; 4WJ4 A; 1YEZ A; 1SE8 A; 4IPH A; 1VQ9 A; 2KBN A; 3DSQ A; 1X2H A; 3I4O A; 4LF6 L; 5K1P A; 4DR1 L; 2VS1 A; 5BR8 Q; 2HHH L; 4XTZ A; 2ZT7 A; 3TEH A; 3F2D A; 3B6Y A; 1N33 Q; 4YRQ A; 3BU2 A; 1C0A A; 3QNE A; 1EQQ A; 2UXB Q; 1Q81 C; 1M90 C; 4O0A A; 1QVG A; 2D0O A; 4BBR H; 2K5V A; 4OP0 A; 5AJ3 L; 3A7U A; 4RQE A; 5JJI A; 1L1O A; 3HTZ A; 3KF8 B; 2XTI A; 4CH6 A; 1EFW A; 3WQZ A; 2J3M A; 1CUK A; 4HWP A; 1WCM H; 3AYH B; 2UUB L; 5FJ8 G; 4IOA A; 3REU A; 1VQJ A; 4OWT B; 5M5Y H; 4R4T A; 1VQL A; 3AQQ A; 2Q7G A; 2I5H A; 1HZB A; 3IRB A; 1H4Q A; 1J5W A; 1YB3 A; 2ASB A; 1A8V A; 5GAG C; 1YI2 A; 2JA8 H; 2KEN A; 4GOP A; 3UDF A; 3HY1 A; 2KHJ A; 4DV3 L; 4XTU A; 3S16 H; 1WYD A; 2I5L X; 1Y1W G; 1QVF A; 1X55 A; 5C4X G; 1VQP A; 1S72 A; 2R93 G; 4NXM L; 2UXD Q; 1SRO A; 4LF9 L; 4BY1 G; 4A3G H; 3PV0 A; 2DXU A; 1OXT A; 5C44 G; 3A5Z A; 4YRF A; 3MEF A; 1XNR Q; 1EIY A; 2JA9 A; 3LGJ A; 2ZCE A; 3KJP A; 4QJF A; 3VQV A; 3VBB A; 4HJ7 A; 4JI1 Q; 4P74 C; 3CCR A; 1OXV A; 3I2Z A; 2ZTD A; 3KDF B; 4A3E H; 3EBE A; 2ES2 A; 3S2D H; 1FVI A; 4BXX G; 3RN5 A; 1FGU A; 3STB C; 1NBW A; 2DQ0 A; 4LFB L; 4X66 L; 1K3R A; 2E2I H; 1VQO A; 2P0L A; 4YRM A; 1Q1B A; 3KF6 B; 4YWM A; 2NVQ H; 3EFR A; 2NVX H; 5IY0 A; 2AKW A; 4GNX C; 2WB1 E; 4X64 Q; 3CC7 A; 1W3S A; 5E3I A; 2OWO A; 4K0K Q; 2LXK A; 2K5N A; 3M4Q A; 3VQW A; 3K81 C; 3E9I A; 2K4K A; 5M5W H; 2VQF Q; 1XJV A; 3EFS A; 4QGU A; 4LUO A; 3ER0 A; 3W1G A; 1A62 A; 3UDX A; 4LF4 L; 3RGL A; 2JE6 I; 1AE2 A; 5IWA Q; 1JB7 A; 4K87 A; 3IKL A; 2DDZ A; 4DV0 Q; 4C3I H; 2UUC L; 4IO9 A; 4DK6 C; 1PVO A; 1GD7 A; 3KLW A; 2F52 A; 4UP8 A; 1HNW L; 3RKY A; 2DZ9 A; 1W2B A; 3HY0 A; 4DUY L; 4GKJ L; 4LF5 L; 4DUZ Q; 4XU3 A; 2Z6K A; 3GD7 A; 2ZIO A; 1I5F A; 4HJ8 A; 4DAM A; 4DR3 L; 1I94 L; 1L1O C; 3CCU A; 3CC2 A; 4QL5 A; 1LTL A; 3RNU A; 1NJ8 A; 4POF A; 4YPF A; 4A3K H; 2K75 A; 2DTI A; 1PYB A; 2ZZG A; 1O7I A; 3I4M H; 5C3E H; 4DR2 L; 1S3O A; 1MIU A; 1N34 L; 2JA7 H; 4HWT A; 2R7Z H; 3TS2 A; 5IYD G; 2ZR2 A; 3DM3 A; 2CJA A; 3K0X A; 4JI4 L; 5IYC H; 2DEQ A; 3K80 C; 1ATI A; 3GTK H; 2DU5 A; 2ZTG A; 4GOP C; 1HJP A; 1I50 H; 1WJJ A; 4RMF A; 2ODR D; 1G6P A; 1KMM A; 4IPC A; 4A3D G; 1G5I A; 1HR0 L; 2DTO A; 1LM0 A; 1VQK A; 3KYH C; 5HGQ A; 2K14 A; 1YIJ A; 4B3R Q; 1SRY A; 3F8T A; 4PZ8 A; 4R1J A; 1B70 A; 2DZC A; 3IAL A; 5M3F G; 1HNZ Q; 4JI3 Q; 4MZ9 A; 1U5K A; 4JYA Q; 3CPW A; 2Y0S G; 2N3S A; 4PZ7 A; 2PQA B; 5K1X A; 2GN5 A; 4DKA C; 4Q15 A; 3HOY G; 1YFS A; 3T1H L; 3A5Y A; 3HFZ A; 2AMC B; 1CKN B; 3H0G H; 4IPG A; 3GTP H; 3T1Y L; 2HNI A; 3A0J A; 2ZZE A; 4GNX B; 1YFT A; 1VQI A; 2H5