1L4SA

Solution structure of ribosome associated factor y
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
112
structure length
112
Chain Sequence
TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protein yfiA
publication title Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Translation
total genus 24
structure length 112
sequence length 112
ec nomenclature
pdb deposition date 2002-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 1l4sA01
4HEIA 1L4SA 1IMUA 2RQLA 2YWQA 1N3GA 3TQMA
chains in the Genus database with same CATH superfamily
2EMXA 4F2JC 1A1KA 4NZVA 4R2CA 4DV7E 2EOJA 4NXME 1X5WA 2YTQA 2N3HA 2YRHA 5AE1A 3EPHA 2EPOA 4GKKE 2EP3A 1G2FC 1XMQE 1XNRE 1J5EE 2EN2A 3EQ1A 4O4KA 5A2QC 4DR5E 1SFEA 4KZSA 3LLHA 1N36E 2B3TB 2EMZA 5T6JA 2EE8A 2EMKA 2EM8A 2V83A 3HTXA 2K7IA 2CPNA 1X49A 2LJHA 1XNQE 2EJ4A 4R2DA 2CSHA 1YFHA 2EOOA 1A1FA 1O0WA 2LMZA 3KZZA 4WXDA 3DJWA 2DGCA 2M1SA 1IBLE 2NA2A 1YUJA 2YSPA 3MHHC 4DR3E 2YTJA 2EPKX 4BHBA 4DV5E 1TN9A 4LFCE 1WHQA 1BBGA 4WPYA 5ADZA 4WFTA 2LTSA 3FIGA 4N4RB 1QU6A 2RTXA 4I8OA 2K4VA 4O5GA 3KWRA 5TSEA 2EOQA 2VF1A 1A1HA 1N3GA 5A6BD 4WSPA 2V85A 4LF9E 4DV2E 1YPNA 2EN3A 2UXBE 4R2SA 4B3ME 5LLQA 5LMUE 2J7JA 4BC9A 2EN1A 2NUEA 4R2AA 2ODRD 3EPLA 3IWBA 2DLQA 5KL5A 2YTIA 4OX9E 2EN6A 1PKPA 3H09A 2EL6A 1A1LA 2EN8A 1I94E 1TF3A 4LFBE 2R76A 4M9VC 4LF5E 2JR1A 2M7QA 1B69A 3HQ1A 2WBTA 3K6QA 3ADIA 1T4NA 2MDGA 2EPRA 2V86A 2YZTA 1EH8A 5IXMB 1HNXE 2DRPA 2H36X 2L33A 4OOGC 4YHHE 4JI4E 1YZ9A 3OMLA 4DV1E 2JP9A 4DR6E 2YTOA 2I13A 2YTGA 2VQFE 2LUQA 3C4BA 4JYAE 2EWLA 2R1FA 2E5LE 4P78A 1T4LB 1IMUA 2EOSA 1ZBQA 2EMCA 2ELZA 5KL7A 2FV4B 1YUIA 1DI2A 1ZAAC 4BC7A 1GQEA 4FK5C 2B7VA 2EMHA 4DV3E 4KWYA 2EPXA 2EOZA 2RSMA 4JI2E 2EMGA 4WX9A 1P47A 5KL2A 1IBME 1JK2A 4DMIA 3J81C 1ZU1A 1PJSA 2LRSA 4HTGA 4K0KE 1SR9A 2BBGA 1YYWA 4O43A 3THNA 2EQ0A 2Q8UA 2LE2A 4GEQB 2EQ3A 2MKDA 2MC6A 4RH8A 3DF6A 4ZYEA 1PJTA 2F8BA 2WCC3 1EH6A 1NEIA 2L8TA 1HR0E 4J8ZA 4L5NC 1ZR9A 2GHFA 2RS6A 5AASA 4F9CB 1J26A 2V87A 3M99B 3HXLA 2MDRA 2RSIA 2LJUA 2WZOA 2E72A 3UK3C 4B3TE 2A25A 1GTKA 2EM7A 2LV2A 5A69A 2RS7A 2EN7A 4F6NA 2JXPA 3JTZA 4F54A 4LU9A 2BB8A 2DMIA 3VK6A 4KHPE 4LFAE 1PJQA 2EM4A 4TUIA 1STUA 4DKKA 2NUFA 1WXRA 1RQ0A 2L3JA 2YWQA 4AQYE 2G7HA 1ZBTA 4DV4E 4BMJA 2UXDE 3HPSA 1RC7A 4TUGA 5KL6A 3T1YE 2KOUA 2HHHE 2NABA 3JAMC 2HJJA 2ADRA 2WBSA 5KL4A 2LCEA 1KYQA 2RQLA 4JV5E 1IQSA 5A6JA 3EPKA 2EOMA 2PRTA 2EM3A 2B9DA 1GZ6A 1EKZA 2JPAA 4NHRA 5FLXC 1X3CA 2LVHA 2DIXA 2FGGA 5DNYA 2I9IA 2LO3A 4Q35B 2EMIA 2EPNA 1F2IG 3VYXA 2YTDA 4DUZE 1HNZE 1UHZA 4LF6E 4LF4E 3KZYA 2M4IA 2L2NA 3HPZA 4ZYDA 1AAYA 5LMNE 1X6HA 3THOB 2GLIA 2EN4A 2EMYA 3ADLA 2M9AA 2EOHA 5F3WA 1L4SA 3JU0A 2YTNA 4BBYA 3BIDA 2EMBA 2YPNA 2DB2A 3TQMA 4YY3E 3BBGA 3C4TA 2EOEA 2YTPA 3J7Yp 4ZYHA 4JI7E 4JI3E 1N33E 2L2MA 5A6KA 2EPMX 4R2EA 2D9HA 4LF8E 4X8WA 4X9JA 1IBKE 1WRJA 2EM2A 1KJKA 1A1GA 1YSAC 2JWOA 2VRDA 1X47A 2EPLX 2DLKA 2ENHA 2ENCA 5BR8E 4X65E 3L00A 1AH5A 2MKNA 2LBSB 2E1MA 1WJPA 1A1JA 2WBUA 5IV8B 4R2PA 4X66E 1XMOE 4JI6E 4F6MA 3C6MA 2MC5A 3OTOE 5LL6R 4BHCA 3RMPA 1T39A 5A6BA 3EPJA 3F6GA 2RPCA 2EORA 2UUAE 2LUPB 2EOFA 5KL3A 2V88A 3VYYA 1BBOA 4F9AB 2LTRA 2HGHA 2EMFA 5IT9C 1UN6B 2EQ1A 2YU8A 3AV0A 1PDAA 2EM6A 4R8OA 1T4OA 3QG5C 5AE2A 2UUCE 4JI8E 1TF6A 3ZOQB 4IS1C 1A1IA 4X64E 1IQOA 3AUZA 4LF7E 1UBDC 2YT4A 4R2RA 1JK1A 3LMLA 2VE7C 4JI1E 4BCAA 2ODRC 2B7TA 2EOYA 2L6MA 2YU5A 1RMDA 4B3RE 2DSYA 2L92A 1DGCA 5AE3A 5AC4A 4M30A 2JY9A 4NXNE 2EZ6A 2JOXA 2EPPA 2YTFA 2YRMA 1YYKA 5CFFE 2JYAA 1NCSA 2V89A 2VQEE 1FJGE 4DR1E 2EOXA 3F6HA 4WXCA 4DR7E 4WSGA 4M0VA 4JI0E 2EM0A 3P1XA 2UXCE 4R2QA 1G2DC 2EM9A 2CT1A 1N34E 2V8QB 4L8NA 1MEYC 2GPIA 4M2ZA 2EPZA 3J7AG 2DMYA 2YSOA 2L2KB 4DV6E 5A6AA 4F9BB 1MGTA 2EL5A 4R03A 1QNTA 2EL4A 4P7DA 2FTXB 3ADJA 4Q28A 3ECRA 2UU9E 5AC5A 4MLQA 4BS9A 3VHTB 4DR4E 2NUGA 2YRKA 3IWCA 4DV0E 3MHSC 1BB8A 4X62E 3MSWA 1T38A 1YYOA 3ADGA 1FKAE 2JOBA 2N8XA 3IWDA 4RHBB 4ZYGA 1Z1BA 2EPAA 2EM5A 2YTEA 4MLVA 4O24A 2ELYA 2ZM6E 2EMLA 5IWAE 3J80C 2IHR1 3T1HE 1UILA 1HNWE 2HC5A 4IJDA 1DQ3A 1EH7A 2LT7A 2EMAA 1X6EA 4DR2E 2F4VE 1X6FA 4GZNC 4GKJE 2ENAA 2KHXA 2EPCA 2EOIA 3BF2A 1N32E 2EMWA 4LTYA 1X48A 1LLMC 2JVAA 2N3GA 4DUYE 2KONA 4B3SE 4HEIA 4WYQB 4JI5E 1WHNA 3C6KA 2L3CA 3BGHA 2UUBE 2CTDA 2EPUA
chains in the Genus database with same CATH topology
4HEIA 1L4SA 1IMUA 2RQLA 2YWQA 1N3GA 3TQMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HEI A;  1L4S A;  1IMU A;  2RQL A;  2YWQ A;  1N3G A;  3TQM A; 
#chains in the Genus database with same CATH topology
 2EMX A;  4F2J C;  1A1K A;  4NZV A;  4R2C A;  4DV7 E;  2EOJ A;  4NXM E;  1X5W A;  2YTQ A;  2N3H A;  2YRH A;  5AE1 A;  3EPH A;  2EPO A;  4GKK E;  2EP3 A;  1G2F C;  1XMQ E;  1XNR E;  1J5E E;  2EN2 A;  3EQ1 A;  4O4K A;  5A2Q C;  4DR5 E;  1SFE A;  4KZS A;  3LLH A;  1N36 E;  2B3T B;  2EMZ A;  5T6J A;  2EE8 A;  2EMK A;  2EM8 A;  2V83 A;  3HTX A;  2K7I A;  2CPN A;  1X49 A;  2LJH A;  1XNQ E;  2EJ4 A;  4R2D A;  2CSH A;  1YFH A;  2EOO A;  1A1F A;  1O0W A;  2LMZ A;  3KZZ A;  4WXD A;  3DJW A;  2DGC A;  2M1S A;  1IBL E;  2NA2 A;  1YUJ A;  2YSP A;  3MHH C;  4DR3 E;  2YTJ A;  2EPK X;  4BHB A;  4DV5 E;  1TN9 A;  4LFC E;  1WHQ A;  1BBG A;  4WPY A;  5ADZ A;  4WFT A;  2LTS A;  3FIG A;  4N4R B;  1QU6 A;  2RTX A;  4I8O A;  2K4V A;  4O5G A;  3KWR A;  5TSE A;  2EOQ A;  2VF1 A;  1A1H A;  1N3G A;  5A6B D;  4WSP A;  2V85 A;  4LF9 E;  4DV2 E;  1YPN A;  2EN3 A;  2UXB E;  4R2S A;  4B3M E;  5LLQ A;  5LMU E;  2J7J A;  4BC9 A;  2EN1 A;  2NUE A;  4R2A A;  2ODR D;  3EPL A;  3IWB A;  2DLQ A;  5KL5 A;  2YTI A;  4OX9 E;  2EN6 A;  1PKP A;  3H09 A;  2EL6 A;  1A1L A;  2EN8 A;  1I94 E;  1TF3 A;  4LFB E;  2R76 A;  4M9V C;  4LF5 E;  2JR1 A;  2M7Q A;  1B69 A;  3HQ1 A;  2WBT A;  3K6Q A;  3ADI A;  1T4N A;  2MDG A;  2EPR A;  2V86 A;  2YZT A;  1EH8 A;  5IXM B;  1HNX E;  2DRP A;  2H36 X;  2L33 A;  4OOG C;  4YHH E;  4JI4 E;  1YZ9 A;  3OML A;  4DV1 E;  2JP9 A;  4DR6 E;  2YTO A;  2I13 A;  2YTG A;  2VQF E;  2LUQ A;  3C4B A;  4JYA E;  2EWL A;  2R1F A;  2E5L E;  4P78 A;  1T4L B;  1IMU A;  2EOS A;  1ZBQ A;  2EMC A;  2ELZ A;  5KL7 A;  2FV4 B;  1YUI A;  1DI2 A;  1ZAA C;  4BC7 A;  1GQE A;  4FK5 C;  2B7V A;  2EMH A;  4DV3 E;  4KWY A;  2EPX A;  2EOZ A;  2RSM A;  4JI2 E;  2EMG A;  4WX9 A;  1P47 A;  5KL2 A;  1IBM E;  1JK2 A;  4DMI A;  3J81 C;  1ZU1 A;  1PJS A;  2LRS A;  4HTG A;  4K0K E;  1SR9 A;  2BBG A;  1YYW A;  4O43 A;  3THN A;  2EQ0 A;  2Q8U A;  2LE2 A;  4GEQ B;  2EQ3 A;  2MKD A;  2MC6 A;  4RH8 A;  3DF6 A;  4ZYE A;  1PJT A;  2F8B A;  2WCC 3;  1EH6 A;  1NEI A;  2L8T A;  1HR0 E;  4J8Z A;  4L5N C;  1ZR9 A;  2GHF A;  2RS6 A;  5AAS A;  4F9C B;  1J26 A;  2V87 A;  3M99 B;  3HXL A;  2MDR A;  2RSI A;  2LJU A;  2WZO A;  2E72 A;  3UK3 C;  4B3T E;  2A25 A;  1GTK A;  2EM7 A;  2LV2 A;  5A69 A;  2RS7 A;  2EN7 A;  4F6N A;  2JXP A;  3JTZ A;  4F54 A;  4LU9 A;  2BB8 A;  2DMI A;  3VK6 A;  4KHP E;  4LFA E;  1PJQ A;  2EM4 A;  4TUI A;  1STU A;  4DKK A;  2NUF A;  1WXR A;  1RQ0 A;  2L3J A;  2YWQ A;  4AQY E;  2G7H A;  1ZBT A;  4DV4 E;  4BMJ A;  2UXD E;  3HPS A;  1RC7 A;  4TUG A;  5KL6 A;  3T1Y E;  2KOU A;  2HHH E;  2NAB A;  3JAM C;  2HJJ A;  2ADR A;  2WBS A;  5KL4 A;  2LCE A;  1KYQ A;  2RQL A;  4JV5 E;  1IQS A;  5A6J A;  3EPK A;  2EOM A;  2PRT A;  2EM3 A;  2B9D A;  1GZ6 A;  1EKZ A;  2JPA A;  4NHR A;  5FLX C;  1X3C A;  2LVH A;  2DIX A;  2FGG A;  5DNY A;  2I9I A;  2LO3 A;  4Q35 B;  2EMI A;  2EPN A;  1F2I G;  3VYX A;  2YTD A;  4DUZ E;  1HNZ E;  1UHZ A;  4LF6 E;  4LF4 E;  3KZY A;  2M4I A;  2L2N A;  3HPZ A;  4ZYD A;  1AAY A;  5LMN E;  1X6H A;  3THO B;  2GLI A;  2EN4 A;  2EMY A;  3ADL A;  2M9A A;  2EOH A;  5F3W A;  1L4S A;  3JU0 A;  2YTN A;  4BBY A;  3BID A;  2EMB A;  2YPN A;  2DB2 A;  3TQM A;  4YY3 E;  3BBG A;  3C4T A;  2EOE A;  2YTP A;  3J7Y p;  4ZYH A;  4JI7 E;  4JI3 E;  1N33 E;  2L2M A;  5A6K A;  2EPM X;  4R2E A;  2D9H A;  4LF8 E;  4X8W A;  4X9J A;  1IBK E;  1WRJ A;  2EM2 A;  1KJK A;  1A1G A;  1YSA C;  2JWO A;  2VRD A;  1X47 A;  2EPL X;  2DLK A;  2ENH A;  2ENC A;  5BR8 E;  4X65 E;  3L00 A;  1AH5 A;  2MKN A;  2LBS B;  2E1M A;  1WJP A;  1A1J A;  2WBU A;  5IV8 B;  4R2P A;  4X66 E;  1XMO E;  4JI6 E;  4F6M A;  3C6M A;  2MC5 A;  3OTO E;  5LL6 R;  4BHC A;  3RMP A;  1T39 A;  5A6B A;  3EPJ A;  3F6G A;  2RPC A;  2EOR A;  2UUA E;  2LUP B;  2EOF A;  5KL3 A;  2V88 A;  3VYY A;  1BBO A;  4F9A B;  2LTR A;  2HGH A;  2EMF A;  5IT9 C;  1UN6 B;  2EQ1 A;  2YU8 A;  3AV0 A;  1PDA A;  2EM6 A;  4R8O A;  1T4O A;  3QG5 C;  5AE2 A;  2UUC E;  4JI8 E;  1TF6 A;  3ZOQ B;  4IS1 C;  1A1I A;  4X64 E;  1IQO A;  3AUZ A;  4LF7 E;  1UBD C;  2YT4 A;  4R2R A;  1JK1 A;  3LML A;  2VE7 C;  4JI1 E;  4BCA A;  2ODR C;  2B7T A;  2EOY A;  2L6M A;  2YU5 A;  1RMD A;  4B3R E;  2DSY A;  2L92 A;  1DGC A;  5AE3 A;  5AC4 A;  4M30 A;  2JY9 A;  4NXN E;  2EZ6 A;  2JOX A;  2EPP A;  2YTF A;  2YRM A;  1YYK A;  5CFF E;  2JYA A;  1NCS A;  2V89 A;  2VQE E;  1FJG E;  4DR1 E;  2EOX A;  3F6H A;  4WXC A;  4DR7 E;  4WSG A;  4M0V A;  4JI0 E;  2EM0 A;  3P1X A;  2UXC E;  4R2Q A;  1G2D C;  2EM9 A;  2CT1 A;  1N34 E;  2V8Q B;  4L8N A;  1MEY C;  2GPI A;  4M2Z A;  2EPZ A;  3J7A G;  2DMY A;  2YSO A;  2L2K B;  4DV6 E;  5A6A A;  4F9B B;  1MGT A;  2EL5 A;  4R03 A;  1QNT A;  2EL4 A;  4P7D A;  2FTX B;  3ADJ A;  4Q28 A;  3ECR A;  2UU9 E;  5AC5 A;  4MLQ A;  4BS9 A;  3VHT B;  4DR4 E;  2NUG A;  2YRK A;  3IWC A;  4DV0 E;  3MHS C;  1BB8 A;  4X62 E;  3MSW A;  1T38 A;  1YYO A;  3ADG A;  1FKA E;  2JOB A;  2N8X A;  3IWD A;  4RHB B;  4ZYG A;  1Z1B A;  2EPA A;  2EM5 A;  2YTE A;  4MLV A;  4O24 A;  2ELY A;  2ZM6 E;  2EML A;  5IWA E;  3J80 C;  2IHR 1;  3T1H E;  1UIL A;  1HNW E;  2HC5 A;  4IJD A;  1DQ3 A;  1EH7 A;  2LT7 A;  2EMA A;  1X6E A;  4DR2 E;  2F4V E;  1X6F A;  4GZN C;  4GKJ E;  2ENA A;  2KHX A;  2EPC A;  2EOI A;  3BF2 A;  1N32 E;  2EMW A;  4LTY A;  1X48 A;  1LLM C;  2JVA A;  2N3G A;  4DUY E;  2KON A;  4B3S E;  4HEI A;  4WYQ B;  4JI5 E;  1WHN A;  3C6K A;  2L3C A;  3BGH A;  2UUB E;  2CTD A;  2EPU A; 
#chains in the Genus database with same CATH homology
 4HEI A;  1L4S A;  1IMU A;  2RQL A;  2YWQ A;  1N3G A;  3TQM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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