1L4SA

Solution structure of ribosome associated factor y
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
112
structure length
112
Chain Sequence
TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
molecule keywords Protein yfiA
publication title Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold.
pubmed doi rcsb
source organism Escherichia coli
total genus 24
structure length 112
sequence length 112
ec nomenclature
pdb deposition date 2002-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 1l4sA01
2RQLA 1IMUA 4HEIA 1L4SA 3TQMA 2YWQA 1N3GA
chains in the Genus database with same CATH superfamily
1EH6A 2CPNA 2EN2A 4P78A 2L3CA 1X6EA 5IV8B 4DUYE 3EPHA 1AH5A 2WZOA 1A1IA 2EMYA 5T6JA 2V8QB 1SR9A 4Q35B 2WCC3 3VHTB 2LUPB 2EL6A 4LFBE 1HNWE 4M9VC 3C4BA 2VRDA 3KWRA 3VYYA 3C6KA 2EPPA 2YZTA 2EMLA 2PRTA 2M7QA 2NUFA 5IXMB 2ENCA 1EKZA 4WSPA 1X6HA 1N33E 4NXME 2HGHA 2V88A 2ELYA 3BF2A 4WSGA 3QG5C 2E72A 2YU5A 2YRKA 2CT1A 5A69A 5A6KA 1PJTA 3T1HE 1GQEA 1A1GA 2D9HA 2YTJA 1A1KA 2EMBA 2EM4A 2LUQA 4DMIA 2EQ1A 1WXRA 1X49A 2EOSA 2LV2A 4WX9A 4ZYEA 4BHBA 1X3CA 2I13A 2EMWA 4DUZE 1J26A 4B3TE 5TSEA 2N3GA 1I94E 2YRHA 2EMCA 4BCAA 2EN1A 4DV5E 4X9JA 2YPNA 2MKNA 3JU0A 2YTFA 2EPCA 1F2IG 2EL5A 4DR5E 1IBLE 1MGTA 4JI4E 4BBYA 2L33A 2LT7A 1IBKE 2YTQA 2UU9E 3DF6A 1N32E 2YSOA 4R2PA 4AQYE 2RS7A 5LMNE 1YSAC 2EPUA 1IBME 3AUZA 3ADJA 2V89A 3ZOQB 3M99B 4O24A 2N3HA 2YTIA 1ZBTA 3K6QA 2DSYA 2EOEA 2KHXA 1T4OA 5A6BD 1WHNA 4DR4E 1TF3A 2JP9A 5KL2A 3THOB 4F9CB 2B7VA 2EPZA 4ZYHA 2K7IA 5A6BA 2EZ6A 1X48A 2EM3A 3P1XA 1FJGE 2RSIA 3C4TA 3EQ1A 2EMAA 2EMKA 2M1SA 5AASA 1HNXE 2EOMA 4R03A 4JYAE 2NABA 1EH8A 2DIXA 2UXBE 2EM5A 2EJ4A 3KZZA 3IWCA 2EN4A 4WXDA 2EMGA 4BC7A 1XNQE 2FGGA 3ECRA 1N3GA 2MDGA 3ADIA 5AE1A 2EPKX 4J8ZA 2YSPA 3TQMA 4KHPE 2DMIA 4WXCA 1NEIA 3FIGA 1YFHA 5FLXC 4DR2E 5ADZA 4K0KE 3T1YE 2MC5A 3EPKA 2JYAA 2E5LE 2EM0A 2EMHA 1PJSA 4DV7E 4HEIA 1TN9A 2YU8A 1QU6A 4KWYA 2KONA 2RSMA 3VK6A 4DV2E 2EE8A 1L4SA 4BC9A 4MLQA 3L00A 2EOOA 2M4IA 2CSHA 3MSWA 4TUIA 1YPNA 1GZ6A 2EOHA 2VQFE 3HQ1A 1A1HA 3JAMC 2HJJA 1XNRE 1XMOE 1IQOA 4X8WA 2UUBE 4LTYA 2V87A 1T4LB 2LVHA 5BR8E 2EQ3A 3ADLA 2RQLA 1HR0E 4O5GA 2EM6A 1PDAA 2HC5A 4YY3E 4N4RB 4GZNC 2EPMX 4DV4E 4F9AB 2EMIA 4JI7E 5LL6R 2JY9A 1HNZE 3BGHA 2IHR1 2M9AA 2EN7A 2ENHA 4HTGA 4X66E 1UN6B 4B3SE 1YYWA 1DGCA 2LCEA 2EQ0A 4LF6E 5A6JA 2EMXA 4BMJA 4WPYA 2Q8UA 4IJDA 4DV0E 1JK2A 4O4KA 4LF8E 2A25A 1WJPA 4DV1E 2JPAA 4F2JC 2EORA 1XMQE 1SFEA 2L8TA 1A1JA 1ZR9A 3OTOE 1AAYA 4LF4E 3C6MA 4GKJE 2B7TA 1FKAE 2DLQA 1YYKA 4DR3E 1G2FC 2YTNA 4R2CA 4F54A 2N8XA 4L5NC 2UUAE 2EPLX 4LFCE 4JI3E 3LMLA 2GPIA 4NZVA 1PKPA 2JOBA 1YUIA 1J5EE 4R2QA 2VF1A 2L3JA 4R8OA 1P47A 4Q28A 2LE2A 4O43A 2E1MA 3J81C 4X65E 2GHFA 4F6MA 2MC6A 1B69A 4JI5E 2UXDE 4ZYGA 2ZM6E 4FK5C 2L6MA 5F3WA 2ELZA 3F6GA 5KL5A 2LO3A 4F9BB 4DV3E 2YTGA 1G2DC 1A1LA 4JI2E 4NXNE 2FTXB 3BIDA 2LTSA 2NUGA 4JI0E 2JVAA 2VE7C 2BB8A 2EMZA 2V83A 2YTDA 3HPZA 4MLVA 1A1FA 2MKDA 2GLIA 4LF7E 2EN6A 3IWBA 2F8BA 2L92A 1DI2A 2ADRA 2RTXA 2MDRA 3JTZA 2EM8A 4JI6E 5AC5A 2DGCA 2EOZA 2EPRA 3ADGA 4R2AA 2WBUA 1X47A 4X64E 4ZYDA 1NCSA 2B9DA 2EL4A 2WBSA 2R1FA 2L2KB 3KZYA 5KL3A 2R76A 2RS6A 4R2DA 2ENAA 4IS1C 4GKKE 2EOIA 4GEQB 4BS9A 3J7Yp 2LBSB 1RMDA 1DQ3A 3VYXA 2JXPA 4LU9A 2V86A 4RHBB 2EOJA 2EPOA 2NA2A 1JK1A 4RH8A 4M0VA 1ZBQA 2FV4B 1T38A 2YT4A 4R2RA 4JI1E 1IQSA 5DNYA 4DR7E 1ZU1A 2JWOA 1YYOA 4DR1E 2UXCE 2EMFA 3IWDA 4LF5E 1LLMC 2DLKA 2HHHE 2L2NA 1ZAAC 4LFAE 1UILA 2EM7A 4R2SA 4BHCA 3HTXA 2J7JA 2YTEA 1BB8A 3J80C 4DKKA 1O0WA 2LMZA 2DRPA 4KZSA 3HXLA 2EN3A 4OX9E 2YTPA 2ODRD 2YTOA 3H09A 2EN8A 2EP3A 4I8OA 4YHHE 5A6AA 2LTRA 2WBTA 2V85A 2JOXA 1WRJA 3F6HA 1YZ9A 1QNTA 3OMLA 4NHRA 1RQ0A 1N36E 4DR6E 5AE2A 2I9IA 1WHQA 2B3TB 2H36X 4JI8E 4LF9E 1RC7A 1N34E 2EM9A 4B3ME 1X6FA 1YUJA 5KL6A 2KOUA 4JV5E 4F6NA 2EOYA 1T4NA 4DV6E 4M2ZA 5LLQA 5AE3A 2JR1A 3THNA 3BBGA 2EOFA 4OOGC 2YWQA 4R2EA 3AV0A 1PJQA 1BBGA 2CTDA 2EWLA 5A2QC 3LLHA 3HPSA 1UBDC 2EPNA 2LRSA 1IMUA 3J7AG 2VQEE 2EOXA 2ODRC 4B3RE 5CFFE 2EPXA 1UHZA 2EPAA 2BBGA 2L2MA 1STUA 1T39A 3EPJA 2LJUA 4L8NA 2YRMA 1KJKA 1EH7A 1GTKA 5IWAE 3DJWA 5AC4A 3RMPA 2RPCA 1Z1BA 5LMUE 4WYQB 3EPLA 5KL7A 2G7HA 4TUGA 3MHSC 2DMYA 1MEYC 2F4VE 1BBOA 2UUCE 2EM2A 2DB2A 4P7DA 1KYQA 2EOQA 3MHHC 4WFTA 4X62E 1TF6A 5KL4A 2LJHA 1X5WA 5IT9C 2NUEA 4M30A 3UK3C 2K4VA
chains in the Genus database with same CATH topology
2RQLA 1IMUA 4HEIA 1L4SA 3TQMA 2YWQA 1N3GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RQL A;  1IMU A;  4HEI A;  1L4S A;  3TQM A;  2YWQ A;  1N3G A; 
#chains in the Genus database with same CATH topology
 1EH6 A;  2CPN A;  2EN2 A;  4P78 A;  2L3C A;  1X6E A;  5IV8 B;  4DUY E;  3EPH A;  1AH5 A;  2WZO A;  1A1I A;  2EMY A;  5T6J A;  2V8Q B;  1SR9 A;  4Q35 B;  2WCC 3;  3VHT B;  2LUP B;  2EL6 A;  4LFB E;  1HNW E;  4M9V C;  3C4B A;  2VRD A;  3KWR A;  3VYY A;  3C6K A;  2EPP A;  2YZT A;  2EML A;  2PRT A;  2M7Q A;  2NUF A;  5IXM B;  2ENC A;  1EKZ A;  4WSP A;  1X6H A;  1N33 E;  4NXM E;  2HGH A;  2V88 A;  2ELY A;  3BF2 A;  4WSG A;  3QG5 C;  2E72 A;  2YU5 A;  2YRK A;  2CT1 A;  5A69 A;  5A6K A;  1PJT A;  3T1H E;  1GQE A;  1A1G A;  2D9H A;  2YTJ A;  1A1K A;  2EMB A;  2EM4 A;  2LUQ A;  4DMI A;  2EQ1 A;  1WXR A;  1X49 A;  2EOS A;  2LV2 A;  4WX9 A;  4ZYE A;  4BHB A;  1X3C A;  2I13 A;  2EMW A;  4DUZ E;  1J26 A;  4B3T E;  5TSE A;  2N3G A;  1I94 E;  2YRH A;  2EMC A;  4BCA A;  2EN1 A;  4DV5 E;  4X9J A;  2YPN A;  2MKN A;  3JU0 A;  2YTF A;  2EPC A;  1F2I G;  2EL5 A;  4DR5 E;  1IBL E;  1MGT A;  4JI4 E;  4BBY A;  2L33 A;  2LT7 A;  1IBK E;  2YTQ A;  2UU9 E;  3DF6 A;  1N32 E;  2YSO A;  4R2P A;  4AQY E;  2RS7 A;  5LMN E;  1YSA C;  2EPU A;  1IBM E;  3AUZ A;  3ADJ A;  2V89 A;  3ZOQ B;  3M99 B;  4O24 A;  2N3H A;  2YTI A;  1ZBT A;  3K6Q A;  2DSY A;  2EOE A;  2KHX A;  1T4O A;  5A6B D;  1WHN A;  4DR4 E;  1TF3 A;  2JP9 A;  5KL2 A;  3THO B;  4F9C B;  2B7V A;  2EPZ A;  4ZYH A;  2K7I A;  5A6B A;  2EZ6 A;  1X48 A;  2EM3 A;  3P1X A;  1FJG E;  2RSI A;  3C4T A;  3EQ1 A;  2EMA A;  2EMK A;  2M1S A;  5AAS A;  1HNX E;  2EOM A;  4R03 A;  4JYA E;  2NAB A;  1EH8 A;  2DIX A;  2UXB E;  2EM5 A;  2EJ4 A;  3KZZ A;  3IWC A;  2EN4 A;  4WXD A;  2EMG A;  4BC7 A;  1XNQ E;  2FGG A;  3ECR A;  1N3G A;  2MDG A;  3ADI A;  5AE1 A;  2EPK X;  4J8Z A;  2YSP A;  3TQM A;  4KHP E;  2DMI A;  4WXC A;  1NEI A;  3FIG A;  1YFH A;  5FLX C;  4DR2 E;  5ADZ A;  4K0K E;  3T1Y E;  2MC5 A;  3EPK A;  2JYA A;  2E5L E;  2EM0 A;  2EMH A;  1PJS A;  4DV7 E;  4HEI A;  1TN9 A;  2YU8 A;  1QU6 A;  4KWY A;  2KON A;  2RSM A;  3VK6 A;  4DV2 E;  2EE8 A;  1L4S A;  4BC9 A;  4MLQ A;  3L00 A;  2EOO A;  2M4I A;  2CSH A;  3MSW A;  4TUI A;  1YPN A;  1GZ6 A;  2EOH A;  2VQF E;  3HQ1 A;  1A1H A;  3JAM C;  2HJJ A;  1XNR E;  1XMO E;  1IQO A;  4X8W A;  2UUB E;  4LTY A;  2V87 A;  1T4L B;  2LVH A;  5BR8 E;  2EQ3 A;  3ADL A;  2RQL A;  1HR0 E;  4O5G A;  2EM6 A;  1PDA A;  2HC5 A;  4YY3 E;  4N4R B;  4GZN C;  2EPM X;  4DV4 E;  4F9A B;  2EMI A;  4JI7 E;  5LL6 R;  2JY9 A;  1HNZ E;  3BGH A;  2IHR 1;  2M9A A;  2EN7 A;  2ENH A;  4HTG A;  4X66 E;  1UN6 B;  4B3S E;  1YYW A;  1DGC A;  2LCE A;  2EQ0 A;  4LF6 E;  5A6J A;  2EMX A;  4BMJ A;  4WPY A;  2Q8U A;  4IJD A;  4DV0 E;  1JK2 A;  4O4K A;  4LF8 E;  2A25 A;  1WJP A;  4DV1 E;  2JPA A;  4F2J C;  2EOR A;  1XMQ E;  1SFE A;  2L8T A;  1A1J A;  1ZR9 A;  3OTO E;  1AAY A;  4LF4 E;  3C6M A;  4GKJ E;  2B7T A;  1FKA E;  2DLQ A;  1YYK A;  4DR3 E;  1G2F C;  2YTN A;  4R2C A;  4F54 A;  2N8X A;  4L5N C;  2UUA E;  2EPL X;  4LFC E;  4JI3 E;  3LML A;  2GPI A;  4NZV A;  1PKP A;  2JOB A;  1YUI A;  1J5E E;  4R2Q A;  2VF1 A;  2L3J A;  4R8O A;  1P47 A;  4Q28 A;  2LE2 A;  4O43 A;  2E1M A;  3J81 C;  4X65 E;  2GHF A;  4F6M A;  2MC6 A;  1B69 A;  4JI5 E;  2UXD E;  4ZYG A;  2ZM6 E;  4FK5 C;  2L6M A;  5F3W A;  2ELZ A;  3F6G A;  5KL5 A;  2LO3 A;  4F9B B;  4DV3 E;  2YTG A;  1G2D C;  1A1L A;  4JI2 E;  4NXN E;  2FTX B;  3BID A;  2LTS A;  2NUG A;  4JI0 E;  2JVA A;  2VE7 C;  2BB8 A;  2EMZ A;  2V83 A;  2YTD A;  3HPZ A;  4MLV A;  1A1F A;  2MKD A;  2GLI A;  4LF7 E;  2EN6 A;  3IWB A;  2F8B A;  2L92 A;  1DI2 A;  2ADR A;  2RTX A;  2MDR A;  3JTZ A;  2EM8 A;  4JI6 E;  5AC5 A;  2DGC A;  2EOZ A;  2EPR A;  3ADG A;  4R2A A;  2WBU A;  1X47 A;  4X64 E;  4ZYD A;  1NCS A;  2B9D A;  2EL4 A;  2WBS A;  2R1F A;  2L2K B;  3KZY A;  5KL3 A;  2R76 A;  2RS6 A;  4R2D A;  2ENA A;  4IS1 C;  4GKK E;  2EOI A;  4GEQ B;  4BS9 A;  3J7Y p;  2LBS B;  1RMD A;  1DQ3 A;  3VYX A;  2JXP A;  4LU9 A;  2V86 A;  4RHB B;  2EOJ A;  2EPO A;  2NA2 A;  1JK1 A;  4RH8 A;  4M0V A;  1ZBQ A;  2FV4 B;  1T38 A;  2YT4 A;  4R2R A;  4JI1 E;  1IQS A;  5DNY A;  4DR7 E;  1ZU1 A;  2JWO A;  1YYO A;  4DR1 E;  2UXC E;  2EMF A;  3IWD A;  4LF5 E;  1LLM C;  2DLK A;  2HHH E;  2L2N A;  1ZAA C;  4LFA E;  1UIL A;  2EM7 A;  4R2S A;  4BHC A;  3HTX A;  2J7J A;  2YTE A;  1BB8 A;  3J80 C;  4DKK A;  1O0W A;  2LMZ A;  2DRP A;  4KZS A;  3HXL A;  2EN3 A;  4OX9 E;  2YTP A;  2ODR D;  2YTO A;  3H09 A;  2EN8 A;  2EP3 A;  4I8O A;  4YHH E;  5A6A A;  2LTR A;  2WBT A;  2V85 A;  2JOX A;  1WRJ A;  3F6H A;  1YZ9 A;  1QNT A;  3OML A;  4NHR A;  1RQ0 A;  1N36 E;  4DR6 E;  5AE2 A;  2I9I A;  1WHQ A;  2B3T B;  2H36 X;  4JI8 E;  4LF9 E;  1RC7 A;  1N34 E;  2EM9 A;  4B3M E;  1X6F A;  1YUJ A;  5KL6 A;  2KOU A;  4JV5 E;  4F6N A;  2EOY A;  1T4N A;  4DV6 E;  4M2Z A;  5LLQ A;  5AE3 A;  2JR1 A;  3THN A;  3BBG A;  2EOF A;  4OOG C;  2YWQ A;  4R2E A;  3AV0 A;  1PJQ A;  1BBG A;  2CTD A;  2EWL A;  5A2Q C;  3LLH A;  3HPS A;  1UBD C;  2EPN A;  2LRS A;  1IMU A;  3J7A G;  2VQE E;  2EOX A;  2ODR C;  4B3R E;  5CFF E;  2EPX A;  1UHZ A;  2EPA A;  2BBG A;  2L2M A;  1STU A;  1T39 A;  3EPJ A;  2LJU A;  4L8N A;  2YRM A;  1KJK A;  1EH7 A;  1GTK A;  5IWA E;  3DJW A;  5AC4 A;  3RMP A;  2RPC A;  1Z1B A;  5LMU E;  4WYQ B;  3EPL A;  5KL7 A;  2G7H A;  4TUG A;  3MHS C;  2DMY A;  1MEY C;  2F4V E;  1BBO A;  2UUC E;  2EM2 A;  2DB2 A;  4P7D A;  1KYQ A;  2EOQ A;  3MHH C;  4WFT A;  4X62 E;  1TF6 A;  5KL4 A;  2LJH A;  1X5W A;  5IT9 C;  2NUE A;  4M30 A;  3UK3 C;  2K4V A; 
#chains in the Genus database with same CATH homology
 2RQL A;  1IMU A;  4HEI A;  1L4S A;  3TQM A;  2YWQ A;  1N3G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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