1L4SA

Solution structure of ribosome associated factor y
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
112
structure length
112
Chain Sequence
TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Translation
molecule keywords Protein yfiA
total genus 24
structure length 112
sequence length 112
ec nomenclature
pdb deposition date 2002-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 1l4sA01
2RQLA 4HEIA 1N3GA 1L4SA 1IMUA 2YWQA 3TQMA
chains in the Genus database with same CATH superfamily
1P47A 1ZBQA 1J26A 5ADZA 3F6GA 2MKNA 2EPPA 2LTRA 3DF6A 2EOHA 5AE3A 2EM9A 4F6MA 2GHFA 2H36X 2EMYA 2JYAA 4R2QA 2EPRA 2MC6A 1T4OA 4FK5C 4X8WA 1A1FA 4BMJA 5CFFE 3MHHC 4DR7E 4TUGA 2DLQA 2EPMX 5AE1A 1UHZA 2DB2A 3EPKA 3AV0A 4DR3E 1WHNA 2EN4A 2JVAA 2MC5A 1IQSA 2V85A 1WXRA 1J5EE 4F9CB 1WJPA 1X5WA 4LF8E 4IS1C 2EN2A 2YPNA 2EN1A 2EMCA 2ENAA 3J7AG 1X6EA 2CPNA 4DUZE 1I94E 2EQ1A 1DQ3A 2LE2A 4WXCA 5KL3A 2UXDE 4GZNC 4GKKE 1AH5A 4F2JC 4BCAA 4B3RE 1T4LB 2YU5A 2JP9A 4LU9A 1A1JA 4JI6E 3IWCA 2YSOA 1JK1A 3UK3C 5IV8B 2EM4A 4LFBE 3IWBA 4LTYA 3OTOE 2JWOA 1EH8A 4M9VC 1BBGA 2GPIA 2N8XA 3ADLA 2WBUA 3C6KA 2EMWA 2ENHA 4M30A 3HQ1A 4M0VA 4LF5E 2VQEE 2EPOA 3RMPA 4DR1E 1EH6A 4DV5E 4NHRA 1LLMC 4X9JA 5BR8E 2LUQA 2BBGA 3HXLA 2M7QA 4F9AB 2YU8A 4WFTA 4DKKA 4Q28A 1HNWE 2EQ3A 1FJGE 2EPCA 2EOSA 1N3GA 1L4SA 2YTPA 4JI5E 4HTGA 2EMHA 4WYQB 4X65E 2YT4A 2K4VA 5KL5A 4F9BB 1MGTA 4DR5E 2UUBE 2YRMA 2NUEA 2EP3A 2YTNA 2F8BA 4ZYHA 3C4BA 2VRDA 4ZYEA 2RSIA 3FIGA 2EN8A 5IT9C 1XMOE 2PRTA 3EPHA 2E1MA 4P7DA 2EMAA 1RQ0A 2EL4A 3M99B 1TF3A 2E5LE 2EM0A 1N33E 3J7Yp 2L8TA 2L3CA 2L3JA 2LUPB 1HR0E 4DUYE 1RMDA 1PJTA 4JV5E 2EOFA 3J81C 2WBTA 1A1IA 5LL6R 5A6BA 4BC7A 1UBDC 2GLIA 1NEIA 2B7TA 3P1XA 1A1GA 1YFHA 2LJUA 3KWRA 1DGCA 1ZAAC 4DV0E 2L2KB 1X47A 2EOXA 4LF6E 1SR9A 1IQOA 3F6HA 4WSPA 4AQYE 2WZOA 2EM8A 4TUIA 2YRHA 2V86A 1PKPA 4NXME 4KHPE 2EPNA 5TSEA 1IBLE 2KOUA 1RC7A 5A6KA 4R2DA 2L2MA 4DV4E 2V89A 3ZOQB 2A25A 3JU0A 2ELYA 2BB8A 3T1YE 2M4IA 2R1FA 5F3WA 1ZBTA 2M9AA 1T39A 4NXNE 3ADIA 2LJHA 2EOIA 5A6AA 2CT1A 2VQFE 4JI7E 2EM6A 5KL4A 3EPLA 4F6NA 3EPJA 4MLQA 4X64E 2YTIA 2YTDA 2JXPA 3L00A 2EMLA 2EN3A 4WSGA 2CTDA 1YZ9A 2EM7A 4B3TE 3AUZA 1O0WA 3T1HE 2EM5A 3TQMA 5LLQA 5IXMB 2LCEA 4OOGC 2RQLA 1NCSA 2B3TB 2JR1A 4DR2E 2VE7C 3VHTB 2EE8A 2UUCE 4JI3E 4R2AA 1A1HA 4R2PA 1N34E 3DJWA 4RHBB 1PDAA 3BIDA 3VK6A 1G2FC 5AC4A 1T4NA 2LT7A 4LF7E 1YYOA 5A69A 2EMGA 4O43A 1YPNA 3OMLA 1UILA 2EPAA 4YHHE 2V8QB 2ODRD 1ZU1A 5A6BD 5IWAE 2L2NA 4RH8A 2EMKA 2EL5A 4I8OA 2EORA 3IWDA 1KYQA 2B9DA 2WCC3 2D9HA 2EN6A 2J7JA 1GQEA 2DSYA 4L5NC 2YTQA 4LF4E 4BHCA 2IHR1 4K0KE 2EL6A 2EMBA 2LBSB 4J8ZA 2DMIA 1TF6A 1XMQE 2ENCA 4JI2E 4WXDA 4DR4E 2DLKA 1X48A 1YYWA 1XNQE 1QU6A 5AE2A 4DV2E 1EKZA 5T6JA 3THNA 4YY3E 4BBYA 4O5GA 4JI4E 1X6HA 2YWQA 1X6FA 2NUGA 5A2QC 3H09A 4BC9A 2I9IA 2EMIA 2MKDA 2HJJA 1FKAE 1G2DC 4Q35B 4JI1E 4F54A 2EOEA 3THOB 2EPXA 2LV2A 1GZ6A 4N4RB 1PJSA 1EH7A 1YUJA 2L92A 4JI8E 1PJQA 4R03A 2EPLX 1HNZE 4JYAE 2UXCE 2EOYA 1GTKA 2JOBA 2F4VE 4DV6E 2MDRA 2EN7A 2EOQA 4LFAE 2VF1A 2FTXB 3JAMC 3ADJA 5AASA 4LFCE 2LTSA 4DMIA 1WRJA 4DR6E 3KZYA 1STUA 2UU9E 4R8OA 2YRKA 3BGHA 5KL7A 2EPZA 2EMFA 2HC5A 2N3GA 4HEIA 2ZM6E 1YYKA 1BB8A 4KZSA 2EM3A 2LMZA 1KJKA 4X62E 2EOMA 4DV1E 3J80C 2RSMA 2WBSA 2M1SA 4WPYA 5KL2A 2EJ4A 3JTZA 2HGHA 3C6MA 2JOXA 2N3HA 1N36E 3KZZA 4B3SE 2ODRC 1UN6B 3HTXA 3MSWA 2V87A 2V88A 5LMNE 2KONA 1JK2A 2FV4B 2EPUA 2YSPA 2UXBE 3QG5C 1T38A 4ZYDA 4GKJE 1AAYA 2RTXA 2JY9A 2RPCA 4ZYGA 4O4KA 1XNRE 3LMLA 2R76A 2FGGA 2UUAE 5A6JA 3MHSC 4R2CA 4L8NA 3K6QA 3BF2A 1A1KA 4LF9E 2HHHE 2ELZA 2Q8UA 3VYYA 4BS9A 4B3ME 4R2SA 4OX9E 2JPAA 2G7HA 3VYXA 2B7VA 1DI2A 4NZVA 2EWLA 2LO3A 2NA2A 4P78A 2K7IA 2YTEA 2YZTA 3HPSA 4MLVA 2L33A 2MDGA 5FLXC 4DV3E 2NUFA 1QNTA 2KHXA 3HPZA 4IJDA 1IBKE 1X3CA 3EQ1A 2NABA 1IMUA 1B69A 5DNYA 1HNXE 1WHQA 2YTGA 1A1LA 2RS6A 2DMYA 2LRSA 4BHBA 2EPKX 2EM2A 1X49A 2EMZA 2EOOA 4R2EA 2YTFA 2EQ0A 5KL6A 2DIXA 5AC5A 2I13A 2EOZA 2CSHA 2DGCA 4R2RA 4X66E 1BBOA 1F2IG 2EOJA 1Z1BA 2L6MA 2LVHA 2RS7A 2YTOA 4JI0E 1IBME 4M2ZA 3ADGA 4WX9A 3LLHA 1ZR9A 2EZ6A 2DRPA 1TN9A 1N32E 4KWYA 2V83A 5LMUE 3ECRA 2YTJA 4DV7E 1YUIA 3C4TA 2ADRA 4O24A 1YSAC 3BBGA 1MEYC 2E72A 4GEQB 1SFEA 2EMXA
chains in the Genus database with same CATH topology
2RQLA 4HEIA 1N3GA 1L4SA 1IMUA 2YWQA 3TQMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RQL A;  4HEI A;  1N3G A;  1L4S A;  1IMU A;  2YWQ A;  3TQM A; 
#chains in the Genus database with same CATH topology
 1P47 A;  1ZBQ A;  1J26 A;  5ADZ A;  3F6G A;  2MKN A;  2EPP A;  2LTR A;  3DF6 A;  2EOH A;  5AE3 A;  2EM9 A;  4F6M A;  2GHF A;  2H36 X;  2EMY A;  2JYA A;  4R2Q A;  2EPR A;  2MC6 A;  1T4O A;  4FK5 C;  4X8W A;  1A1F A;  4BMJ A;  5CFF E;  3MHH C;  4DR7 E;  4TUG A;  2DLQ A;  2EPM X;  5AE1 A;  1UHZ A;  2DB2 A;  3EPK A;  3AV0 A;  4DR3 E;  1WHN A;  2EN4 A;  2JVA A;  2MC5 A;  1IQS A;  2V85 A;  1WXR A;  1J5E E;  4F9C B;  1WJP A;  1X5W A;  4LF8 E;  4IS1 C;  2EN2 A;  2YPN A;  2EN1 A;  2EMC A;  2ENA A;  3J7A G;  1X6E A;  2CPN A;  4DUZ E;  1I94 E;  2EQ1 A;  1DQ3 A;  2LE2 A;  4WXC A;  5KL3 A;  2UXD E;  4GZN C;  4GKK E;  1AH5 A;  4F2J C;  4BCA A;  4B3R E;  1T4L B;  2YU5 A;  2JP9 A;  4LU9 A;  1A1J A;  4JI6 E;  3IWC A;  2YSO A;  1JK1 A;  3UK3 C;  5IV8 B;  2EM4 A;  4LFB E;  3IWB A;  4LTY A;  3OTO E;  2JWO A;  1EH8 A;  4M9V C;  1BBG A;  2GPI A;  2N8X A;  3ADL A;  2WBU A;  3C6K A;  2EMW A;  2ENH A;  4M30 A;  3HQ1 A;  4M0V A;  4LF5 E;  2VQE E;  2EPO A;  3RMP A;  4DR1 E;  1EH6 A;  4DV5 E;  4NHR A;  1LLM C;  4X9J A;  5BR8 E;  2LUQ A;  2BBG A;  3HXL A;  2M7Q A;  4F9A B;  2YU8 A;  4WFT A;  4DKK A;  4Q28 A;  1HNW E;  2EQ3 A;  1FJG E;  2EPC A;  2EOS A;  1N3G A;  1L4S A;  2YTP A;  4JI5 E;  4HTG A;  2EMH A;  4WYQ B;  4X65 E;  2YT4 A;  2K4V A;  5KL5 A;  4F9B B;  1MGT A;  4DR5 E;  2UUB E;  2YRM A;  2NUE A;  2EP3 A;  2YTN A;  2F8B A;  4ZYH A;  3C4B A;  2VRD A;  4ZYE A;  2RSI A;  3FIG A;  2EN8 A;  5IT9 C;  1XMO E;  2PRT A;  3EPH A;  2E1M A;  4P7D A;  2EMA A;  1RQ0 A;  2EL4 A;  3M99 B;  1TF3 A;  2E5L E;  2EM0 A;  1N33 E;  3J7Y p;  2L8T A;  2L3C A;  2L3J A;  2LUP B;  1HR0 E;  4DUY E;  1RMD A;  1PJT A;  4JV5 E;  2EOF A;  3J81 C;  2WBT A;  1A1I A;  5LL6 R;  5A6B A;  4BC7 A;  1UBD C;  2GLI A;  1NEI A;  2B7T A;  3P1X A;  1A1G A;  1YFH A;  2LJU A;  3KWR A;  1DGC A;  1ZAA C;  4DV0 E;  2L2K B;  1X47 A;  2EOX A;  4LF6 E;  1SR9 A;  1IQO A;  3F6H A;  4WSP A;  4AQY E;  2WZO A;  2EM8 A;  4TUI A;  2YRH A;  2V86 A;  1PKP A;  4NXM E;  4KHP E;  2EPN A;  5TSE A;  1IBL E;  2KOU A;  1RC7 A;  5A6K A;  4R2D A;  2L2M A;  4DV4 E;  2V89 A;  3ZOQ B;  2A25 A;  3JU0 A;  2ELY A;  2BB8 A;  3T1Y E;  2M4I A;  2R1F A;  5F3W A;  1ZBT A;  2M9A A;  1T39 A;  4NXN E;  3ADI A;  2LJH A;  2EOI A;  5A6A A;  2CT1 A;  2VQF E;  4JI7 E;  2EM6 A;  5KL4 A;  3EPL A;  4F6N A;  3EPJ A;  4MLQ A;  4X64 E;  2YTI A;  2YTD A;  2JXP A;  3L00 A;  2EML A;  2EN3 A;  4WSG A;  2CTD A;  1YZ9 A;  2EM7 A;  4B3T E;  3AUZ A;  1O0W A;  3T1H E;  2EM5 A;  3TQM A;  5LLQ A;  5IXM B;  2LCE A;  4OOG C;  2RQL A;  1NCS A;  2B3T B;  2JR1 A;  4DR2 E;  2VE7 C;  3VHT B;  2EE8 A;  2UUC E;  4JI3 E;  4R2A A;  1A1H A;  4R2P A;  1N34 E;  3DJW A;  4RHB B;  1PDA A;  3BID A;  3VK6 A;  1G2F C;  5AC4 A;  1T4N A;  2LT7 A;  4LF7 E;  1YYO A;  5A69 A;  2EMG A;  4O43 A;  1YPN A;  3OML A;  1UIL A;  2EPA A;  4YHH E;  2V8Q B;  2ODR D;  1ZU1 A;  5A6B D;  5IWA E;  2L2N A;  4RH8 A;  2EMK A;  2EL5 A;  4I8O A;  2EOR A;  3IWD A;  1KYQ A;  2B9D A;  2WCC 3;  2D9H A;  2EN6 A;  2J7J A;  1GQE A;  2DSY A;  4L5N C;  2YTQ A;  4LF4 E;  4BHC A;  2IHR 1;  4K0K E;  2EL6 A;  2EMB A;  2LBS B;  4J8Z A;  2DMI A;  1TF6 A;  1XMQ E;  2ENC A;  4JI2 E;  4WXD A;  4DR4 E;  2DLK A;  1X48 A;  1YYW A;  1XNQ E;  1QU6 A;  5AE2 A;  4DV2 E;  1EKZ A;  5T6J A;  3THN A;  4YY3 E;  4BBY A;  4O5G A;  4JI4 E;  1X6H A;  2YWQ A;  1X6F A;  2NUG A;  5A2Q C;  3H09 A;  4BC9 A;  2I9I A;  2EMI A;  2MKD A;  2HJJ A;  1FKA E;  1G2D C;  4Q35 B;  4JI1 E;  4F54 A;  2EOE A;  3THO B;  2EPX A;  2LV2 A;  1GZ6 A;  4N4R B;  1PJS A;  1EH7 A;  1YUJ A;  2L92 A;  4JI8 E;  1PJQ A;  4R03 A;  2EPL X;  1HNZ E;  4JYA E;  2UXC E;  2EOY A;  1GTK A;  2JOB A;  2F4V E;  4DV6 E;  2MDR A;  2EN7 A;  2EOQ A;  4LFA E;  2VF1 A;  2FTX B;  3JAM C;  3ADJ A;  5AAS A;  4LFC E;  2LTS A;  4DMI A;  1WRJ A;  4DR6 E;  3KZY A;  1STU A;  2UU9 E;  4R8O A;  2YRK A;  3BGH A;  5KL7 A;  2EPZ A;  2EMF A;  2HC5 A;  2N3G A;  4HEI A;  2ZM6 E;  1YYK A;  1BB8 A;  4KZS A;  2EM3 A;  2LMZ A;  1KJK A;  4X62 E;  2EOM A;  4DV1 E;  3J80 C;  2RSM A;  2WBS A;  2M1S A;  4WPY A;  5KL2 A;  2EJ4 A;  3JTZ A;  2HGH A;  3C6M A;  2JOX A;  2N3H A;  1N36 E;  3KZZ A;  4B3S E;  2ODR C;  1UN6 B;  3HTX A;  3MSW A;  2V87 A;  2V88 A;  5LMN E;  2KON A;  1JK2 A;  2FV4 B;  2EPU A;  2YSP A;  2UXB E;  3QG5 C;  1T38 A;  4ZYD A;  4GKJ E;  1AAY A;  2RTX A;  2JY9 A;  2RPC A;  4ZYG A;  4O4K A;  1XNR E;  3LML A;  2R76 A;  2FGG A;  2UUA E;  5A6J A;  3MHS C;  4R2C A;  4L8N A;  3K6Q A;  3BF2 A;  1A1K A;  4LF9 E;  2HHH E;  2ELZ A;  2Q8U A;  3VYY A;  4BS9 A;  4B3M E;  4R2S A;  4OX9 E;  2JPA A;  2G7H A;  3VYX A;  2B7V A;  1DI2 A;  4NZV A;  2EWL A;  2LO3 A;  2NA2 A;  4P78 A;  2K7I A;  2YTE A;  2YZT A;  3HPS A;  4MLV A;  2L33 A;  2MDG A;  5FLX C;  4DV3 E;  2NUF A;  1QNT A;  2KHX A;  3HPZ A;  4IJD A;  1IBK E;  1X3C A;  3EQ1 A;  2NAB A;  1IMU A;  1B69 A;  5DNY A;  1HNX E;  1WHQ A;  2YTG A;  1A1L A;  2RS6 A;  2DMY A;  2LRS A;  4BHB A;  2EPK X;  2EM2 A;  1X49 A;  2EMZ A;  2EOO A;  4R2E A;  2YTF A;  2EQ0 A;  5KL6 A;  2DIX A;  5AC5 A;  2I13 A;  2EOZ A;  2CSH A;  2DGC A;  4R2R A;  4X66 E;  1BBO A;  1F2I G;  2EOJ A;  1Z1B A;  2L6M A;  2LVH A;  2RS7 A;  2YTO A;  4JI0 E;  1IBM E;  4M2Z A;  3ADG A;  4WX9 A;  3LLH A;  1ZR9 A;  2EZ6 A;  2DRP A;  1TN9 A;  1N32 E;  4KWY A;  2V83 A;  5LMU E;  3ECR A;  2YTJ A;  4DV7 E;  1YUI A;  3C4T A;  2ADR A;  4O24 A;  1YSA C;  3BBG A;  1MEY C;  2E72 A;  4GEQ B;  1SFE A;  2EMX A; 
#chains in the Genus database with same CATH homology
 2RQL A;  4HEI A;  1N3G A;  1L4S A;  1IMU A;  2YWQ A;  3TQM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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