1L4SA

Solution structure of ribosome associated factor y
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
112
structure length
112
Chain Sequence
TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Translation
molecule keywords Protein yfiA
total genus 24
structure length 112
sequence length 112
ec nomenclature
pdb deposition date 2002-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 1l4sA01
1L4SA 1N3GA 2RQLA 2YWQA 3TQMA 4HEIA 1IMUA
chains in the Genus database with same CATH superfamily
2RS7A 3P1XA 3VYYA 3BGHA 4WXCA 4TUIA 4R8OA 5KL2A 2JOBA 1SFEA 2A25A 2LJUA 3ECRA 3KZZA 4DR5E 2EM5A 2V86A 2JP9A 1HNXE 4NZVA 1IBKE 1G2DC 1WJPA 2RS6A 3AV0A 2LV2A 4FK5C 3ZOQB 4JI8E 1AH5A 2B9DA 3JU0A 2YU5A 2PRTA 2DMIA 2NUFA 1GQEA 3J7Yp 2EPZA 1G2FC 3ADIA 5AE2A 4F54A 3OTOE 2EMKA 4BC9A 2EN2A 5IT9C 2EPPA 3EQ1A 1GZ6A 4TUGA 4BCAA 2EZ6A 3ADJA 1XMQE 2JY9A 1YYWA 1X6EA 2Q8UA 4X64E 1RC7A 4B3SE 3KWRA 2EOIA 2LRSA 2EN3A 2I13A 1DGCA 4DV6E 2G7HA 2EMFA 2GHFA 2YRKA 3ADLA 5DNYA 4WSGA 2EN6A 4GEQB 2YT4A 3THNA 2L3JA 2DSYA 4OOGC 3HPZA 2N3GA 4DV7E 1DI2A 2BBGA 2GPIA 2IHR1 2EL5A 2LTRA 2NA2A 2YTPA 2YSOA 2V88A 2EM6A 2FTXB 5IV8B 3IWBA 4WFTA 4DV0E 4R2EA 2YTIA 2CTDA 4B3TE 5TSEA 4K0KE 2GLIA 1BB8A 4R2PA 1PKPA 2YZTA 3IWCA 5IWAE 2L8TA 2RQLA 4KWYA 2YTNA 2E1MA 2E72A 1YUIA 2NUGA 1YPNA 2YRMA 2R76A 2EOQA 4NHRA 5AASA 2EOSA 4KZSA 1A1FA 4LFBE 2RSIA 2L2MA 2EN4A 2EMLA 3AUZA 4LF5E 4LF8E 1UN6B 4O24A 3MHHC 2UXDE 4DR4E 2EM9A 2NABA 1JK2A 3UK3C 4JYAE 5KL3A 4HTGA 2EPLX 1YFHA 2LO3A 5AC5A 2V85A 4N4RB 4LTYA 1X49A 1ZAAC 3T1YE 4DR2E 2EPOA 2WBUA 3HQ1A 3JTZA 5A6BA 3DF6A 1WRJA 2MC5A 5IXMB 1NEIA 2LBSB 5A2QC 4LF7E 1XNQE 2EORA 2RPCA 3C6KA 2EQ3A 5LMNE 2B3TB 2FGGA 4LF4E 4WPYA 5A6BD 2YTQA 4JI0E 2EPCA 2EMWA 1IBLE 3MHSC 2EN8A 2DLQA 5FLXC 3LLHA 1X6FA 4X65E 2EMYA 1UILA 1IQSA 2EMCA 2B7VA 2JVAA 1BBOA 4GZNC 2JXPA 2MKNA 4WX9A 2EOEA 2M7QA 1DQ3A 1T4OA 2I9IA 4DR6E 2M1SA 3FIGA 2EPUA 3J80C 4WYQB 2DLKA 2EM0A 2LCEA 5LLQA 1QNTA 1YYKA 2YTOA 1J5EE 5A6JA 2VQFE 4NXME 3VYXA 1I94E 2DB2A 2D9HA 2LVHA 2RTXA 4R2QA 4ZYHA 2F4VE 2EN1A 5KL5A 4L8NA 4BS9A 5BR8E 2EP3A 3H09A 2L33A 3M99B 2CSHA 2ELYA 2EMIA 1IBME 2M4IA 5LL6R 4BC7A 2MDRA 1HNWE 4DR3E 4DV5E 1FKAE 2ODRC 2EPKX 1EH8A 2LMZA 4M9VC 4GKKE 2WBSA 2UUCE 1ZR9A 1YZ9A 4Q28A 2LTSA 1ZU1A 2K4VA 1EH6A 2JPAA 3TQMA 1IQOA 4LF9E 1WHQA 2L3CA 4X62E 4ZYEA 2VRDA 3T1HE 5F3WA 4M30A 1ZBQA 1J26A 2EM2A 3BF2A 4DR1E 5ADZA 5A6AA 1YSAC 2N3HA 2DMYA 5AE1A 1X5WA 2JYAA 3QG5C 4YY3E 2M9AA 2EOZA 2EQ0A 2HJJA 4R2CA 1Z1BA 4O43A 4JI7E 3J81C 1UHZA 1L4SA 2J7JA 5AE3A 1XNRE 4HEIA 4BHBA 2EOOA 2YRHA 2H36X 2ODRD 2LJHA 4JI5E 1PJTA 1A1GA 2CPNA 4F6NA 2EOHA 1O0WA 4BMJA 4RH8A 2EMGA 3HXLA 1N3GA 2WBTA 4L5NC 2NUEA 4O4KA 2EPXA 4YHHE 3VHTB 4F9AB 1T39A 3C6MA 2FV4B 1EH7A 4ZYGA 2KHXA 3C4TA 2LE2A 2ENCA 4WSPA 1N32E 2EOMA 2L2KB 4OX9E 2EMZA 2L6MA 3MSWA 1HNZE 2F8BA 4DV3E 2EPRA 3J7AG 4LU9A 5A69A 2EE8A 1AAYA 2EPAA 2V89A 2DGCA 4R2DA 1F2IG 4RHBB 2ELZA 5KL7A 2YTDA 2JOXA 2CT1A 5A6KA 5LMUE 4F2JC 2YTEA 4JI6E 2N8XA 2HGHA 2YWQA 1PJSA 2L2NA 5T6JA 2K7IA 4X66E 1KYQA 4JI3E 4O5GA 2WZOA 5KL6A 2VF1A 2YTFA 2UUAE 4R03A 4R2SA 4DV1E 1TF6A 3IWDA 3EPJA 4NXNE 2KOUA 4JI4E 4AQYE 5AC4A 1MGTA 2EQ1A 1BBGA 1MEYC 1KJKA 1RQ0A 2EOYA 3RMPA 3OMLA 2UU9E 1RMDA 1XMOE 1N36E 4DV2E 2YPNA 2UUBE 5KL4A 4F6MA 2LT7A 1IMUA 4BBYA 1WXRA 1ZBTA 4DUYE 1T38A 4P78A 2RSMA 2EL4A 4GKJE 2UXBE 4LFAE 1A1JA 4Q35B 1WHNA 4WXDA 3F6HA 2WCC3 1A1HA 4LF6E 3KZYA 2KONA 3EPHA 2EM7A 2V8QB 4X8WA 2MDGA 4R2RA 3JAMC 2HHHE 2UXCE 4M0VA 4JV5E 3VK6A 2EOFA 3EPLA 4B3ME 2JWOA 2YTGA 1X48A 4J8ZA 4DV4E 2B7TA 4LFCE 4IS1C 5CFFE 2ENHA 2MC6A 4M2ZA 2LUQA 3K6QA 1A1KA 1PJQA 4MLVA 3EPKA 1A1IA 2EM4A 3L00A 1UBDC 1JK1A 1YYOA 3C4BA 3HTXA 2EPMX 4P7DA 4KHPE 2ZM6E 1N33E 1YUJA 2EJ4A 1P47A 2YTJA 2YSPA 2HC5A 2LUPB 1SR9A 1STUA 2JR1A 3BIDA 2EM8A 1B69A 2ENAA 2DRPA 1FJGE 2V83A 4BHCA 2EPNA 2DIXA 2EN7A 1X3CA 2EMBA 2EOJA 3DJWA 4DUZE 2EMHA 2L92A 2VQEE 3LMLA 1TN9A 4I8OA 4DR7E 2BB8A 2MKDA 4F9CB 1N34E 3THOB 1GTKA 2ADRA 1QU6A 4F9BB 4JI1E 1PDAA 1T4NA 1T4LB 2VE7C 3ADGA 3HPSA 1EKZA 2EWLA 2V87A 4JI2E 2EMAA 2EL6A 1TF3A 4R2AA 1X47A 1X6HA 1A1LA 2E5LE 2YU8A 3BBGA 1LLMC 4B3RE 2EM3A 4ZYDA 4MLQA 1HR0E 4DKKA 2R1FA 2EOXA 4X9JA 3F6GA 4IJDA 2EMXA 1NCSA 4DMIA
chains in the Genus database with same CATH topology
1L4SA 1N3GA 2RQLA 2YWQA 3TQMA 4HEIA 1IMUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L4S A;  1N3G A;  2RQL A;  2YWQ A;  3TQM A;  4HEI A;  1IMU A; 
#chains in the Genus database with same CATH topology
 2RS7 A;  3P1X A;  3VYY A;  3BGH A;  4WXC A;  4TUI A;  4R8O A;  5KL2 A;  2JOB A;  1SFE A;  2A25 A;  2LJU A;  3ECR A;  3KZZ A;  4DR5 E;  2EM5 A;  2V86 A;  2JP9 A;  1HNX E;  4NZV A;  1IBK E;  1G2D C;  1WJP A;  2RS6 A;  3AV0 A;  2LV2 A;  4FK5 C;  3ZOQ B;  4JI8 E;  1AH5 A;  2B9D A;  3JU0 A;  2YU5 A;  2PRT A;  2DMI A;  2NUF A;  1GQE A;  3J7Y p;  2EPZ A;  1G2F C;  3ADI A;  5AE2 A;  4F54 A;  3OTO E;  2EMK A;  4BC9 A;  2EN2 A;  5IT9 C;  2EPP A;  3EQ1 A;  1GZ6 A;  4TUG A;  4BCA A;  2EZ6 A;  3ADJ A;  1XMQ E;  2JY9 A;  1YYW A;  1X6E A;  2Q8U A;  4X64 E;  1RC7 A;  4B3S E;  3KWR A;  2EOI A;  2LRS A;  2EN3 A;  2I13 A;  1DGC A;  4DV6 E;  2G7H A;  2EMF A;  2GHF A;  2YRK A;  3ADL A;  5DNY A;  4WSG A;  2EN6 A;  4GEQ B;  2YT4 A;  3THN A;  2L3J A;  2DSY A;  4OOG C;  3HPZ A;  2N3G A;  4DV7 E;  1DI2 A;  2BBG A;  2GPI A;  2IHR 1;  2EL5 A;  2LTR A;  2NA2 A;  2YTP A;  2YSO A;  2V88 A;  2EM6 A;  2FTX B;  5IV8 B;  3IWB A;  4WFT A;  4DV0 E;  4R2E A;  2YTI A;  2CTD A;  4B3T E;  5TSE A;  4K0K E;  2GLI A;  1BB8 A;  4R2P A;  1PKP A;  2YZT A;  3IWC A;  5IWA E;  2L8T A;  2RQL A;  4KWY A;  2YTN A;  2E1M A;  2E72 A;  1YUI A;  2NUG A;  1YPN A;  2YRM A;  2R76 A;  2EOQ A;  4NHR A;  5AAS A;  2EOS A;  4KZS A;  1A1F A;  4LFB E;  2RSI A;  2L2M A;  2EN4 A;  2EML A;  3AUZ A;  4LF5 E;  4LF8 E;  1UN6 B;  4O24 A;  3MHH C;  2UXD E;  4DR4 E;  2EM9 A;  2NAB A;  1JK2 A;  3UK3 C;  4JYA E;  5KL3 A;  4HTG A;  2EPL X;  1YFH A;  2LO3 A;  5AC5 A;  2V85 A;  4N4R B;  4LTY A;  1X49 A;  1ZAA C;  3T1Y E;  4DR2 E;  2EPO A;  2WBU A;  3HQ1 A;  3JTZ A;  5A6B A;  3DF6 A;  1WRJ A;  2MC5 A;  5IXM B;  1NEI A;  2LBS B;  5A2Q C;  4LF7 E;  1XNQ E;  2EOR A;  2RPC A;  3C6K A;  2EQ3 A;  5LMN E;  2B3T B;  2FGG A;  4LF4 E;  4WPY A;  5A6B D;  2YTQ A;  4JI0 E;  2EPC A;  2EMW A;  1IBL E;  3MHS C;  2EN8 A;  2DLQ A;  5FLX C;  3LLH A;  1X6F A;  4X65 E;  2EMY A;  1UIL A;  1IQS A;  2EMC A;  2B7V A;  2JVA A;  1BBO A;  4GZN C;  2JXP A;  2MKN A;  4WX9 A;  2EOE A;  2M7Q A;  1DQ3 A;  1T4O A;  2I9I A;  4DR6 E;  2M1S A;  3FIG A;  2EPU A;  3J80 C;  4WYQ B;  2DLK A;  2EM0 A;  2LCE A;  5LLQ A;  1QNT A;  1YYK A;  2YTO A;  1J5E E;  5A6J A;  2VQF E;  4NXM E;  3VYX A;  1I94 E;  2DB2 A;  2D9H A;  2LVH A;  2RTX A;  4R2Q A;  4ZYH A;  2F4V E;  2EN1 A;  5KL5 A;  4L8N A;  4BS9 A;  5BR8 E;  2EP3 A;  3H09 A;  2L33 A;  3M99 B;  2CSH A;  2ELY A;  2EMI A;  1IBM E;  2M4I A;  5LL6 R;  4BC7 A;  2MDR A;  1HNW E;  4DR3 E;  4DV5 E;  1FKA E;  2ODR C;  2EPK X;  1EH8 A;  2LMZ A;  4M9V C;  4GKK E;  2WBS A;  2UUC E;  1ZR9 A;  1YZ9 A;  4Q28 A;  2LTS A;  1ZU1 A;  2K4V A;  1EH6 A;  2JPA A;  3TQM A;  1IQO A;  4LF9 E;  1WHQ A;  2L3C A;  4X62 E;  4ZYE A;  2VRD A;  3T1H E;  5F3W A;  4M30 A;  1ZBQ A;  1J26 A;  2EM2 A;  3BF2 A;  4DR1 E;  5ADZ A;  5A6A A;  1YSA C;  2N3H A;  2DMY A;  5AE1 A;  1X5W A;  2JYA A;  3QG5 C;  4YY3 E;  2M9A A;  2EOZ A;  2EQ0 A;  2HJJ A;  4R2C A;  1Z1B A;  4O43 A;  4JI7 E;  3J81 C;  1UHZ A;  1L4S A;  2J7J A;  5AE3 A;  1XNR E;  4HEI A;  4BHB A;  2EOO A;  2YRH A;  2H36 X;  2ODR D;  2LJH A;  4JI5 E;  1PJT A;  1A1G A;  2CPN A;  4F6N A;  2EOH A;  1O0W A;  4BMJ A;  4RH8 A;  2EMG A;  3HXL A;  1N3G A;  2WBT A;  4L5N C;  2NUE A;  4O4K A;  2EPX A;  4YHH E;  3VHT B;  4F9A B;  1T39 A;  3C6M A;  2FV4 B;  1EH7 A;  4ZYG A;  2KHX A;  3C4T A;  2LE2 A;  2ENC A;  4WSP A;  1N32 E;  2EOM A;  2L2K B;  4OX9 E;  2EMZ A;  2L6M A;  3MSW A;  1HNZ E;  2F8B A;  4DV3 E;  2EPR A;  3J7A G;  4LU9 A;  5A69 A;  2EE8 A;  1AAY A;  2EPA A;  2V89 A;  2DGC A;  4R2D A;  1F2I G;  4RHB B;  2ELZ A;  5KL7 A;  2YTD A;  2JOX A;  2CT1 A;  5A6K A;  5LMU E;  4F2J C;  2YTE A;  4JI6 E;  2N8X A;  2HGH A;  2YWQ A;  1PJS A;  2L2N A;  5T6J A;  2K7I A;  4X66 E;  1KYQ A;  4JI3 E;  4O5G A;  2WZO A;  5KL6 A;  2VF1 A;  2YTF A;  2UUA E;  4R03 A;  4R2S A;  4DV1 E;  1TF6 A;  3IWD A;  3EPJ A;  4NXN E;  2KOU A;  4JI4 E;  4AQY E;  5AC4 A;  1MGT A;  2EQ1 A;  1BBG A;  1MEY C;  1KJK A;  1RQ0 A;  2EOY A;  3RMP A;  3OML A;  2UU9 E;  1RMD A;  1XMO E;  1N36 E;  4DV2 E;  2YPN A;  2UUB E;  5KL4 A;  4F6M A;  2LT7 A;  1IMU A;  4BBY A;  1WXR A;  1ZBT A;  4DUY E;  1T38 A;  4P78 A;  2RSM A;  2EL4 A;  4GKJ E;  2UXB E;  4LFA E;  1A1J A;  4Q35 B;  1WHN A;  4WXD A;  3F6H A;  2WCC 3;  1A1H A;  4LF6 E;  3KZY A;  2KON A;  3EPH A;  2EM7 A;  2V8Q B;  4X8W A;  2MDG A;  4R2R A;  3JAM C;  2HHH E;  2UXC E;  4M0V A;  4JV5 E;  3VK6 A;  2EOF A;  3EPL A;  4B3M E;  2JWO A;  2YTG A;  1X48 A;  4J8Z A;  4DV4 E;  2B7T A;  4LFC E;  4IS1 C;  5CFF E;  2ENH A;  2MC6 A;  4M2Z A;  2LUQ A;  3K6Q A;  1A1K A;  1PJQ A;  4MLV A;  3EPK A;  1A1I A;  2EM4 A;  3L00 A;  1UBD C;  1JK1 A;  1YYO A;  3C4B A;  3HTX A;  2EPM X;  4P7D A;  4KHP E;  2ZM6 E;  1N33 E;  1YUJ A;  2EJ4 A;  1P47 A;  2YTJ A;  2YSP A;  2HC5 A;  2LUP B;  1SR9 A;  1STU A;  2JR1 A;  3BID A;  2EM8 A;  1B69 A;  2ENA A;  2DRP A;  1FJG E;  2V83 A;  4BHC A;  2EPN A;  2DIX A;  2EN7 A;  1X3C A;  2EMB A;  2EOJ A;  3DJW A;  4DUZ E;  2EMH A;  2L92 A;  2VQE E;  3LML A;  1TN9 A;  4I8O A;  4DR7 E;  2BB8 A;  2MKD A;  4F9C B;  1N34 E;  3THO B;  1GTK A;  2ADR A;  1QU6 A;  4F9B B;  4JI1 E;  1PDA A;  1T4N A;  1T4L B;  2VE7 C;  3ADG A;  3HPS A;  1EKZ A;  2EWL A;  2V87 A;  4JI2 E;  2EMA A;  2EL6 A;  1TF3 A;  4R2A A;  1X47 A;  1X6H A;  1A1L A;  2E5L E;  2YU8 A;  3BBG A;  1LLM C;  4B3R E;  2EM3 A;  4ZYD A;  4MLQ A;  1HR0 E;  4DKK A;  2R1F A;  2EOX A;  4X9J A;  3F6G A;  4IJD A;  2EMX A;  1NCS A;  4DMI A; 
#chains in the Genus database with same CATH homology
 1L4S A;  1N3G A;  2RQL A;  2YWQ A;  3TQM A;  4HEI A;  1IMU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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