1L4SA

Solution structure of ribosome associated factor y
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
112
structure length
112
Chain Sequence
TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protein yfiA
publication title Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Translation
total genus 24
structure length 112
sequence length 112
ec nomenclature
pdb deposition date 2002-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 1l4sA01
1L4SA 2RQLA 2YWQA 4HEIA 1IMUA 1N3GA 3TQMA
chains in the Genus database with same CATH superfamily
1X47A 4BC7A 3VHTB 1ZU1A 2N3GA 3C4BA 3THNA 1F2IG 1PJTA 2LVHA 2LT7A 3ZOQB 4WSGA 1SFEA 3HPZA 2DB2A 1DQ3A 2YTQA 3BBGA 4DR2E 5KL3A 2YRMA 4DR4E 4X65E 4ZYDA 1IQSA 2EPUA 2ODRC 1YYOA 1T38A 3ADLA 1GZ6A 2JOXA 4M30A 2EPLX 2MKNA 2L33A 4DV5E 4Q35B 4GEQB 2VRDA 4LTYA 4R2SA 1PKPA 4DV3E 3IWBA 4X64E 2ENAA 2EL6A 1EH6A 2EL5A 2MDRA 1PJQA 4DV1E 4DV7E 4R2AA 4DMIA 5FLXC 2HJJA 4KZSA 2RSMA 1JK2A 5A69A 2EOIA 1IBME 1KYQA 1N33E 5IV8B 4NHRA 4GKKE 2EN3A 4M0VA 2LTSA 4F6NA 2UXDE 1WXRA 1IBKE 4RH8A 1X48A 4WX9A 4BS9A 4HEIA 4LU9A 2B7TA 2YT4A 2JY9A 1YSAC 5LMNE 1T39A 4B3TE 2LCEA 4FK5C 3J80C 2EL4A 2EM0A 4BMJA 5CFFE 2VQFE 2ENHA 1EH8A 2NUEA 4RHBB 3MHHC 4IJDA 2CSHA 2HC5A 4I8OA 4Q28A 2N3HA 2H36X 4JI0E 3VYXA 2K7IA 4BCAA 3OMLA 1J26A 5AC5A 3JAMC 3JTZA 1T4LB 4WPYA 1ZAAC 3T1HE 4LF9E 4JV5E 2EMHA 2EN2A 4F9BB 4F54A 4DR1E 2FGGA 2EMBA 1LLMC 1IBLE 3DF6A 2EE8A 4M9VC 2DIXA 2EQ1A 1QNTA 2BB8A 1SR9A 4LF5E 5LMUE 4JI7E 2EM8A 1YFHA 5KL2A 4DV4E 1NEIA 4DR7E 1WJPA 2JWOA 4AQYE 2EM5A 2ENCA 1G2DC 4DUYE 1WHQA 4O4KA 1DI2A 4DR5E 2UUBE 4TUGA 4LF4E 2E1MA 4P78A 2GPIA 1T4OA 1TF6A 2V85A 2LUPB 1DGCA 2UUAE 5A6KA 1A1IA 2G7HA 2M1SA 2UU9E 3C6MA 1ZBQA 2F4VE 2JXPA 2YTFA 1A1JA 2WZOA 5F3WA 2YTPA 1XNRE 4KWYA 3ADJA 2EQ3A 1N36E 2DGCA 2WCC3 2EMIA 2FV4B 1J5EE 2EOZA 5KL7A 2EOYA 2EOXA 4JI4E 2MKDA 4DR3E 2MC5A 2FTXB 4WXCA 2KONA 3AV0A 3JU0A 4BHBA 2MDGA 4WSPA 2LUQA 4YHHE 2EMCA 4ZYGA 2YTGA 2HGHA 3EQ1A 1B69A 3J7AG 2WBUA 1AH5A 1X6FA 2EM4A 4NXNE 4O24A 3P1XA 3VYYA 1UN6B 4X62E 2EN1A 2LBSB 2EPPA 1X3CA 2R1FA 2KOUA 4F2JC 3AUZA 4HTGA 5TSEA 2LTRA 2R76A 2PRTA 2EPCA 4JI2E 4JI8E 5ADZA 2UUCE 2BBGA 4F6MA 2EOHA 3MHSC 5AE1A 4JI6E 1N32E 2EZ6A 2EJ4A 3LMLA 1G2FC 2A25A 4X66E 2EPKX 4WXDA 1X6EA 1YPNA 1BBOA 1L4SA 3DJWA 4X9JA 4B3RE 1I94E 3FIGA 1X6HA 2VE7C 1HNXE 2V89A 1UILA 2YU8A 4R03A 3BIDA 3J81C 2JPAA 2DMYA 3L00A 1A1FA 1FKAE 2JOBA 4ZYHA 4DV2E 4R2DA 2EN6A 2V86A 3TQMA 4R2PA 2UXCE 2NA2A 1EKZA 1WRJA 2DLKA 1YZ9A 2EOSA 5KL5A 2EMLA 3ADGA 3MSWA 2EOQA 1RQ0A 4GZNC 3F6GA 5KL6A 1A1HA 2EMKA 2RPCA 4JI1E 5DNYA 1X49A 2B9DA 1YYWA 2EMAA 4L5NC 2EMYA 1YUJA 4LF8E 4OOGC 2VF1A 2EN4A 2V88A 3EPJA 1HNZE 2I13A 2L2MA 4LFBE 2LJUA 5AE2A 2ZM6E 3C4TA 2ODRD 3LLHA 2V87A 4BHCA 4IS1C 4R2EA 2ELYA 4KHPE 1EH7A 2IHR1 1A1KA 2GLIA 2YPNA 4M2ZA 1PJSA 4R8OA 1WHNA 3KWRA 2RSIA 2JP9A 4MLVA 2EPMX 3HQ1A 5T6JA 4X8WA 5BR8E 4JI5E 3THOB 4NXME 2JVAA 2EPOA 5A6AA 5IXMB 3RMPA 2JYAA 4R2QA 1MEYC 2E5LE 2EM9A 2Q8UA 2RQLA 2LE2A 1UHZA 2JR1A 2LMZA 1PDAA 2LO3A 5LLQA 2EN7A 2EMZA 3VK6A 3T1YE 2M4IA 4DV6E 3ECRA 3C6KA 1P47A 5A6JA 4BC9A 3HXLA 2EORA 3J7Yp 4O43A 3F6HA 2D9HA 2WBTA 3QG5C 2YRHA 5A6BD 2V8QB 2L2NA 1A1LA 2V83A 3UK3C 1N3GA 1TN9A 2B3TB 2LRSA 4LFAE 2EOJA 2YU5A 4MLQA 2YSOA 2EM2A 1JK1A 4LFCE 4J8ZA 2EMXA 2KHXA 3M99B 2VQEE 2EPZA 2EQ0A 2RS6A 2EMFA 4R2CA 2EPXA 1TF3A 1T4NA 2EOEA 2N8XA 4LF6E 3BGHA 1N34E 4N4RB 2YTOA 2NUGA 2NABA 1NCSA 2DMIA 1BB8A 1X5WA 1UBDC 5KL4A 5AE3A 4WFTA 2DRPA 2EPNA 2YRKA 2E72A 1ZBTA 2MC6A 2EM3A 2EPAA 2YWQA 2ELZA 2LJHA 2UXBE 3K6QA 2NUFA 1A1GA 2L3CA 3OTOE 4F9CB 2YSPA 4K0KE 5LL6R 4WYQB 5IWAE 2EM7A 2M7QA 2ADRA 1FJGE 2I9IA 4F9AB 4DUZE 1Z1BA 2M9AA 2YTDA 2EP3A 4O5GA 5A6BA 4R2RA 3ADIA 4GKJE 5AC4A 2L92A 3BF2A 1XMQE 2L2KB 1HR0E 1IQOA 2J7JA 2EPRA 2DLQA 2EMWA 4LF7E 4OX9E 2GHFA 3EPKA 3EPLA 2RS7A 2CPNA 1KJKA 2EOMA 2CT1A 2YTNA 4DR6E 2L6MA 1BBGA 1IMUA 4NZVA 4ZYEA 1AAYA 2YTIA 2RTXA 2EOFA 1HNWE 1YUIA 1GQEA 1QU6A 2YZTA 2EOOA 2K4VA 1O0WA 4B3SE 3IWDA 2EM6A 2L8TA 4L8NA 4JI3E 4BBYA 3HTXA 4DKKA 4YY3E 2YTJA 3IWCA 2EWLA 2F8BA 1YYKA 4P7DA 3H09A 3KZYA 3HPSA 2WBSA 1GTKA 4B3ME 3EPHA 4TUIA 1XMOE 2EN8A 5A2QC 5IT9C 1ZR9A 2YTEA 2DSYA 2L3JA 1RC7A 5AASA 1XNQE 1STUA 2HHHE 2LV2A 4DV0E 2CTDA 3KZZA 2B7VA 4JYAE 1MGTA 2EMGA 1RMDA
chains in the Genus database with same CATH topology
1L4SA 2RQLA 2YWQA 4HEIA 1IMUA 1N3GA 3TQMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L4S A;  2RQL A;  2YWQ A;  4HEI A;  1IMU A;  1N3G A;  3TQM A; 
#chains in the Genus database with same CATH topology
 1X47 A;  4BC7 A;  3VHT B;  1ZU1 A;  2N3G A;  3C4B A;  3THN A;  1F2I G;  1PJT A;  2LVH A;  2LT7 A;  3ZOQ B;  4WSG A;  1SFE A;  3HPZ A;  2DB2 A;  1DQ3 A;  2YTQ A;  3BBG A;  4DR2 E;  5KL3 A;  2YRM A;  4DR4 E;  4X65 E;  4ZYD A;  1IQS A;  2EPU A;  2ODR C;  1YYO A;  1T38 A;  3ADL A;  1GZ6 A;  2JOX A;  4M30 A;  2EPL X;  2MKN A;  2L33 A;  4DV5 E;  4Q35 B;  4GEQ B;  2VRD A;  4LTY A;  4R2S A;  1PKP A;  4DV3 E;  3IWB A;  4X64 E;  2ENA A;  2EL6 A;  1EH6 A;  2EL5 A;  2MDR A;  1PJQ A;  4DV1 E;  4DV7 E;  4R2A A;  4DMI A;  5FLX C;  2HJJ A;  4KZS A;  2RSM A;  1JK2 A;  5A69 A;  2EOI A;  1IBM E;  1KYQ A;  1N33 E;  5IV8 B;  4NHR A;  4GKK E;  2EN3 A;  4M0V A;  2LTS A;  4F6N A;  2UXD E;  1WXR A;  1IBK E;  4RH8 A;  1X48 A;  4WX9 A;  4BS9 A;  4HEI A;  4LU9 A;  2B7T A;  2YT4 A;  2JY9 A;  1YSA C;  5LMN E;  1T39 A;  4B3T E;  2LCE A;  4FK5 C;  3J80 C;  2EL4 A;  2EM0 A;  4BMJ A;  5CFF E;  2VQF E;  2ENH A;  1EH8 A;  2NUE A;  4RHB B;  3MHH C;  4IJD A;  2CSH A;  2HC5 A;  4I8O A;  4Q28 A;  2N3H A;  2H36 X;  4JI0 E;  3VYX A;  2K7I A;  4BCA A;  3OML A;  1J26 A;  5AC5 A;  3JAM C;  3JTZ A;  1T4L B;  4WPY A;  1ZAA C;  3T1H E;  4LF9 E;  4JV5 E;  2EMH A;  2EN2 A;  4F9B B;  4F54 A;  4DR1 E;  2FGG A;  2EMB A;  1LLM C;  1IBL E;  3DF6 A;  2EE8 A;  4M9V C;  2DIX A;  2EQ1 A;  1QNT A;  2BB8 A;  1SR9 A;  4LF5 E;  5LMU E;  4JI7 E;  2EM8 A;  1YFH A;  5KL2 A;  4DV4 E;  1NEI A;  4DR7 E;  1WJP A;  2JWO A;  4AQY E;  2EM5 A;  2ENC A;  1G2D C;  4DUY E;  1WHQ A;  4O4K A;  1DI2 A;  4DR5 E;  2UUB E;  4TUG A;  4LF4 E;  2E1M A;  4P78 A;  2GPI A;  1T4O A;  1TF6 A;  2V85 A;  2LUP B;  1DGC A;  2UUA E;  5A6K A;  1A1I A;  2G7H A;  2M1S A;  2UU9 E;  3C6M A;  1ZBQ A;  2F4V E;  2JXP A;  2YTF A;  1A1J A;  2WZO A;  5F3W A;  2YTP A;  1XNR E;  4KWY A;  3ADJ A;  2EQ3 A;  1N36 E;  2DGC A;  2WCC 3;  2EMI A;  2FV4 B;  1J5E E;  2EOZ A;  5KL7 A;  2EOY A;  2EOX A;  4JI4 E;  2MKD A;  4DR3 E;  2MC5 A;  2FTX B;  4WXC A;  2KON A;  3AV0 A;  3JU0 A;  4BHB A;  2MDG A;  4WSP A;  2LUQ A;  4YHH E;  2EMC A;  4ZYG A;  2YTG A;  2HGH A;  3EQ1 A;  1B69 A;  3J7A G;  2WBU A;  1AH5 A;  1X6F A;  2EM4 A;  4NXN E;  4O24 A;  3P1X A;  3VYY A;  1UN6 B;  4X62 E;  2EN1 A;  2LBS B;  2EPP A;  1X3C A;  2R1F A;  2KOU A;  4F2J C;  3AUZ A;  4HTG A;  5TSE A;  2LTR A;  2R76 A;  2PRT A;  2EPC A;  4JI2 E;  4JI8 E;  5ADZ A;  2UUC E;  2BBG A;  4F6M A;  2EOH A;  3MHS C;  5AE1 A;  4JI6 E;  1N32 E;  2EZ6 A;  2EJ4 A;  3LML A;  1G2F C;  2A25 A;  4X66 E;  2EPK X;  4WXD A;  1X6E A;  1YPN A;  1BBO A;  1L4S A;  3DJW A;  4X9J A;  4B3R E;  1I94 E;  3FIG A;  1X6H A;  2VE7 C;  1HNX E;  2V89 A;  1UIL A;  2YU8 A;  4R03 A;  3BID A;  3J81 C;  2JPA A;  2DMY A;  3L00 A;  1A1F A;  1FKA E;  2JOB A;  4ZYH A;  4DV2 E;  4R2D A;  2EN6 A;  2V86 A;  3TQM A;  4R2P A;  2UXC E;  2NA2 A;  1EKZ A;  1WRJ A;  2DLK A;  1YZ9 A;  2EOS A;  5KL5 A;  2EML A;  3ADG A;  3MSW A;  2EOQ A;  1RQ0 A;  4GZN C;  3F6G A;  5KL6 A;  1A1H A;  2EMK A;  2RPC A;  4JI1 E;  5DNY A;  1X49 A;  2B9D A;  1YYW A;  2EMA A;  4L5N C;  2EMY A;  1YUJ A;  4LF8 E;  4OOG C;  2VF1 A;  2EN4 A;  2V88 A;  3EPJ A;  1HNZ E;  2I13 A;  2L2M A;  4LFB E;  2LJU A;  5AE2 A;  2ZM6 E;  3C4T A;  2ODR D;  3LLH A;  2V87 A;  4BHC A;  4IS1 C;  4R2E A;  2ELY A;  4KHP E;  1EH7 A;  2IHR 1;  1A1K A;  2GLI A;  2YPN A;  4M2Z A;  1PJS A;  4R8O A;  1WHN A;  3KWR A;  2RSI A;  2JP9 A;  4MLV A;  2EPM X;  3HQ1 A;  5T6J A;  4X8W A;  5BR8 E;  4JI5 E;  3THO B;  4NXM E;  2JVA A;  2EPO A;  5A6A A;  5IXM B;  3RMP A;  2JYA A;  4R2Q A;  1MEY C;  2E5L E;  2EM9 A;  2Q8U A;  2RQL A;  2LE2 A;  1UHZ A;  2JR1 A;  2LMZ A;  1PDA A;  2LO3 A;  5LLQ A;  2EN7 A;  2EMZ A;  3VK6 A;  3T1Y E;  2M4I A;  4DV6 E;  3ECR A;  3C6K A;  1P47 A;  5A6J A;  4BC9 A;  3HXL A;  2EOR A;  3J7Y p;  4O43 A;  3F6H A;  2D9H A;  2WBT A;  3QG5 C;  2YRH A;  5A6B D;  2V8Q B;  2L2N A;  1A1L A;  2V83 A;  3UK3 C;  1N3G A;  1TN9 A;  2B3T B;  2LRS A;  4LFA E;  2EOJ A;  2YU5 A;  4MLQ A;  2YSO A;  2EM2 A;  1JK1 A;  4LFC E;  4J8Z A;  2EMX A;  2KHX A;  3M99 B;  2VQE E;  2EPZ A;  2EQ0 A;  2RS6 A;  2EMF A;  4R2C A;  2EPX A;  1TF3 A;  1T4N A;  2EOE A;  2N8X A;  4LF6 E;  3BGH A;  1N34 E;  4N4R B;  2YTO A;  2NUG A;  2NAB A;  1NCS A;  2DMI A;  1BB8 A;  1X5W A;  1UBD C;  5KL4 A;  5AE3 A;  4WFT A;  2DRP A;  2EPN A;  2YRK A;  2E72 A;  1ZBT A;  2MC6 A;  2EM3 A;  2EPA A;  2YWQ A;  2ELZ A;  2LJH A;  2UXB E;  3K6Q A;  2NUF A;  1A1G A;  2L3C A;  3OTO E;  4F9C B;  2YSP A;  4K0K E;  5LL6 R;  4WYQ B;  5IWA E;  2EM7 A;  2M7Q A;  2ADR A;  1FJG E;  2I9I A;  4F9A B;  4DUZ E;  1Z1B A;  2M9A A;  2YTD A;  2EP3 A;  4O5G A;  5A6B A;  4R2R A;  3ADI A;  4GKJ E;  5AC4 A;  2L92 A;  3BF2 A;  1XMQ E;  2L2K B;  1HR0 E;  1IQO A;  2J7J A;  2EPR A;  2DLQ A;  2EMW A;  4LF7 E;  4OX9 E;  2GHF A;  3EPK A;  3EPL A;  2RS7 A;  2CPN A;  1KJK A;  2EOM A;  2CT1 A;  2YTN A;  4DR6 E;  2L6M A;  1BBG A;  1IMU A;  4NZV A;  4ZYE A;  1AAY A;  2YTI A;  2RTX A;  2EOF A;  1HNW E;  1YUI A;  1GQE A;  1QU6 A;  2YZT A;  2EOO A;  2K4V A;  1O0W A;  4B3S E;  3IWD A;  2EM6 A;  2L8T A;  4L8N A;  4JI3 E;  4BBY A;  3HTX A;  4DKK A;  4YY3 E;  2YTJ A;  3IWC A;  2EWL A;  2F8B A;  1YYK A;  4P7D A;  3H09 A;  3KZY A;  3HPS A;  2WBS A;  1GTK A;  4B3M E;  3EPH A;  4TUI A;  1XMO E;  2EN8 A;  5A2Q C;  5IT9 C;  1ZR9 A;  2YTE A;  2DSY A;  2L3J A;  1RC7 A;  5AAS A;  1XNQ E;  1STU A;  2HHH E;  2LV2 A;  4DV0 E;  2CTD A;  3KZZ A;  2B7V A;  4JYA E;  1MGT A;  2EMG A;  1RMD A; 
#chains in the Genus database with same CATH homology
 1L4S A;  2RQL A;  2YWQ A;  4HEI A;  1IMU A;  1N3G A;  3TQM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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