1L5IA

30-conformer nmr ensemble of the n-terminal, dna-binding domain of the replication initiation protein from a geminivirus (tomato yellow leaf curl virus-sardinia)
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
118
structure length
118
Chain Sequence
SGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIKICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDVLEWGTFQIDGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Rep protein
publication title The structure of a replication initiator unites diverse aspects of nucleic acid metabolism
pubmed doi rcsb
source organism Tomato yellow leaf curl sardinia virus
total genus 17
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2002-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00799 Gemini_AL1 Geminivirus Rep catalytic domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1310.20 Alpha Beta 3-Layer(aba) Sandwich Replication Protein E1; Chain: A, Replication Protein E1; Chain: A, 1l5iA00
5DCXA 1TBDA 4LMDA 5BYGA 2IF9A 1UUTA 1L5IA 1L2MA 3QFQA 4FB3A 2TBDA 4ZQ9A 4ZO0A 4FGNA 1M55A 3QN2A 2ITJA 4GDFA 4LIFA 1Z1DB 2HW0A 5CYNA 3QK2A 2IPRA 2NL8A 4NBPA 5D9IA 2FUFA 2NTCA 2ITLA 1RZ9A
chains in the Genus database with same CATH superfamily
5DCXA 1TBDA 4LMDA 5BYGA 2IF9A 1UUTA 1L5IA 1L2MA 3QFQA 4FB3A 3DKXA 2TBDA 4ZQ9A 4ZO0A 4FGNA 1KSXA 1M55A 3QN2A 2ITJA 4GDFA 4LIFA 1Z1DB 3DKYA 4U87A 1R9WA 2HW0A 5CYNA 3QK2A 2IPRA 2NL8A 4NBPA 5D9IA 1F08A 2FUFA 2NTCA 2ITLA 1KSYA 1RZ9A 4KW3A
chains in the Genus database with same CATH topology
5DCXA 1TBDA 4LMDA 5BYGA 2IF9A 1UUTA 1L5IA 1L2MA 3QFQA 4FB3A 3DKXA 2TBDA 4ZQ9A 4ZO0A 4FGNA 1KSXA 1M55A 3QN2A 2ITJA 4GDFA 4LIFA 1Z1DB 3DKYA 4U87A 1R9WA 2HW0A 5CYNA 3QK2A 2IPRA 2NL8A 4NBPA 5D9IA 1F08A 2FUFA 2NTCA 2ITLA 1KSYA 1RZ9A 4KW3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DCX A;  1TBD A;  4LMD A;  5BYG A;  2IF9 A;  1UUT A;  1L5I A;  1L2M A;  3QFQ A;  4FB3 A;  2TBD A;  4ZQ9 A;  4ZO0 A;  4FGN A;  1M55 A;  3QN2 A;  2ITJ A;  4GDF A;  4LIF A;  1Z1D B;  2HW0 A;  5CYN A;  3QK2 A;  2IPR A;  2NL8 A;  4NBP A;  5D9I A;  2FUF A;  2NTC A;  2ITL A;  1RZ9 A; 
#chains in the Genus database with same CATH topology
 5DCX A;  1TBD A;  4LMD A;  5BYG A;  2IF9 A;  1UUT A;  1L5I A;  1L2M A;  3QFQ A;  4FB3 A;  3DKX A;  2TBD A;  4ZQ9 A;  4ZO0 A;  4FGN A;  1KSX A;  1M55 A;  3QN2 A;  2ITJ A;  4GDF A;  4LIF A;  1Z1D B;  3DKY A;  4U87 A;  1R9W A;  2HW0 A;  5CYN A;  3QK2 A;  2IPR A;  2NL8 A;  4NBP A;  5D9I A;  1F08 A;  2FUF A;  2NTC A;  2ITL A;  1KSY A;  1RZ9 A;  4KW3 A; 
#chains in the Genus database with same CATH homology
 5DCX A;  1TBD A;  4LMD A;  5BYG A;  2IF9 A;  1UUT A;  1L5I A;  1L2M A;  3QFQ A;  4FB3 A;  3DKX A;  2TBD A;  4ZQ9 A;  4ZO0 A;  4FGN A;  1KSX A;  1M55 A;  3QN2 A;  2ITJ A;  4GDF A;  4LIF A;  1Z1D B;  3DKY A;  4U87 A;  1R9W A;  2HW0 A;  5CYN A;  3QK2 A;  2IPR A;  2NL8 A;  4NBP A;  5D9I A;  1F08 A;  2FUF A;  2NTC A;  2ITL A;  1KSY A;  1RZ9 A;  4KW3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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