1LB4A

Traf6 apo structure
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
159
structure length
155
Chain Sequence
QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords TNF receptor-associated factor 6
publication title Distinct molecular mechanism for initiating TRAF6 signalling.
pubmed doi rcsb
source organism Homo sapiens
total genus 27
structure length 155
sequence length 159
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2002-04-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1lb4A00
1CA4A 2FOJA 4I7CA 3HU6A 1RF3A 4O1VA 4C9ZA 1D0AA 1CZYA 2F1XA 4GHUA 2XXNA 1LB5A 1FLKA 1QSCA 1CZZA 1LB4A 2FOOA 3IVVA 4GJHA 1FLLA 4CA1A 4K8UA 1D0JA 3HQMA 3HQIA 1YY6A 3HQHA 4JJQA 3MQSC 5H9MA 1KZZA 2A25A 3HSVA 3IVQA 3MQRA 4KG9A 1L0AA 2GKWA 4Z8MA 1LB6A 1CA9A 2CR2A 3ZJBA 2F1ZA 4GWNA 1K2FA 1D00A 2AN6A 4I7DA 1F3VB 2F1WA 3IVBA 4GWMA 4YSIA 1D01A 2F1YA 3HQLA 4I7BA 4M4EA 4X3GA 1YZEA 5E1TA 2FOPA 1ZMSA
chains in the Genus database with same CATH superfamily
1CA4A 2FOJA 4I7CA 3HU6A 1RF3A 4O1VA 4C9ZA 1D0AA 1CZYA 2F1XA 4GHUA 2XXNA 1LB5A 1FLKA 1QSCA 1CZZA 1LB4A 2FOOA 3IVVA 4GJHA 1FLLA 4CA1A 4K8UA 1D0JA 3HQMA 3HQIA 1YY6A 3HQHA 4JJQA 3MQSC 5H9MA 1KZZA 2A25A 3HSVA 3IVQA 3MQRA 4KG9A 1L0AA 2GKWA 4Z8MA 1LB6A 1CA9A 2CR2A 3ZJBA 2F1ZA 4GWNA 1K2FA 1D00A 2AN6A 4I7DA 1F3VB 2F1WA 3IVBA 4GWMA 4YSIA 1D01A 2F1YA 3HQLA 4I7BA 4M4EA 4X3GA 1YZEA 5E1TA 2FOPA 1ZMSA
chains in the Genus database with same CATH topology
1CA4A 2FOJA 4I7CA 3HU6A 1RF3A 4O1VA 4C9ZA 1D0AA 1CZYA 2F1XA 4GHUA 2XXNA 1LB5A 1FLKA 1QSCA 1CZZA 1LB4A 2FOOA 3IVVA 4GJHA 1FLLA 4CA1A 4K8UA 1D0JA 3HQMA 3HQIA 1YY6A 3HQHA 4JJQA 3MQSC 5H9MA 1KZZA 2A25A 3HSVA 3IVQA 3MQRA 4KG9A 1L0AA 2GKWA 4Z8MA 1LB6A 1CA9A 2CR2A 3ZJBA 2F1ZA 4GWNA 1K2FA 1D00A 2AN6A 4I7DA 1F3VB 2F1WA 3IVBA 4GWMA 4YSIA 1D01A 2F1YA 3HQLA 4I7BA 4M4EA 4X3GA 1YZEA 5E1TA 2FOPA 1ZMSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CA4 A;  2FOJ A;  4I7C A;  3HU6 A;  1RF3 A;  4O1V A;  4C9Z A;  1D0A A;  1CZY A;  2F1X A;  4GHU A;  2XXN A;  1LB5 A;  1FLK A;  1QSC A;  1CZZ A;  1LB4 A;  2FOO A;  3IVV A;  4GJH A;  1FLL A;  4CA1 A;  4K8U A;  1D0J A;  3HQM A;  3HQI A;  1YY6 A;  3HQH A;  4JJQ A;  3MQS C;  5H9M A;  1KZZ A;  2A25 A;  3HSV A;  3IVQ A;  3MQR A;  4KG9 A;  1L0A A;  2GKW A;  4Z8M A;  1LB6 A;  1CA9 A;  2CR2 A;  3ZJB A;  2F1Z A;  4GWN A;  1K2F A;  1D00 A;  2AN6 A;  4I7D A;  1F3V B;  2F1W A;  3IVB A;  4GWM A;  4YSI A;  1D01 A;  2F1Y A;  3HQL A;  4I7B A;  4M4E A;  4X3G A;  1YZE A;  5E1T A;  2FOP A;  1ZMS A; 
#chains in the Genus database with same CATH topology
 1CA4 A;  2FOJ A;  4I7C A;  3HU6 A;  1RF3 A;  4O1V A;  4C9Z A;  1D0A A;  1CZY A;  2F1X A;  4GHU A;  2XXN A;  1LB5 A;  1FLK A;  1QSC A;  1CZZ A;  1LB4 A;  2FOO A;  3IVV A;  4GJH A;  1FLL A;  4CA1 A;  4K8U A;  1D0J A;  3HQM A;  3HQI A;  1YY6 A;  3HQH A;  4JJQ A;  3MQS C;  5H9M A;  1KZZ A;  2A25 A;  3HSV A;  3IVQ A;  3MQR A;  4KG9 A;  1L0A A;  2GKW A;  4Z8M A;  1LB6 A;  1CA9 A;  2CR2 A;  3ZJB A;  2F1Z A;  4GWN A;  1K2F A;  1D00 A;  2AN6 A;  4I7D A;  1F3V B;  2F1W A;  3IVB A;  4GWM A;  4YSI A;  1D01 A;  2F1Y A;  3HQL A;  4I7B A;  4M4E A;  4X3G A;  1YZE A;  5E1T A;  2FOP A;  1ZMS A; 
#chains in the Genus database with same CATH homology
 1CA4 A;  2FOJ A;  4I7C A;  3HU6 A;  1RF3 A;  4O1V A;  4C9Z A;  1D0A A;  1CZY A;  2F1X A;  4GHU A;  2XXN A;  1LB5 A;  1FLK A;  1QSC A;  1CZZ A;  1LB4 A;  2FOO A;  3IVV A;  4GJH A;  1FLL A;  4CA1 A;  4K8U A;  1D0J A;  3HQM A;  3HQI A;  1YY6 A;  3HQH A;  4JJQ A;  3MQS C;  5H9M A;  1KZZ A;  2A25 A;  3HSV A;  3IVQ A;  3MQR A;  4KG9 A;  1L0A A;  2GKW A;  4Z8M A;  1LB6 A;  1CA9 A;  2CR2 A;  3ZJB A;  2F1Z A;  4GWN A;  1K2F A;  1D00 A;  2AN6 A;  4I7D A;  1F3V B;  2F1W A;  3IVB A;  4GWM A;  4YSI A;  1D01 A;  2F1Y A;  3HQL A;  4I7B A;  4M4E A;  4X3G A;  1YZE A;  5E1T A;  2FOP A;  1ZMS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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