1LDKA

Structure of the cul1-rbx1-skp1-f boxskp2 scf ubiquitin ligase complex
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
396
structure length
358
Chain Sequence
IGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords CULLIN HOMOLOG
publication title Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex.
pubmed doi rcsb
source organism Homo sapiens
total genus 129
structure length 358
sequence length 396
ec nomenclature
pdb deposition date 2002-04-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1310.10 Mainly Alpha Up-down Bundle 5 helical Cullin repeat like Cullin Repeats 1ldkA02
1.20.1310.10 Mainly Alpha Up-down Bundle 5 helical Cullin repeat like Cullin Repeats 1ldkA01
1.20.1310.10 Mainly Alpha Up-down Bundle 5 helical Cullin repeat like Cullin Repeats 1ldkA03
4P5OA 1LDKB 3RTRA 4EOZB 4HXIB 4WQOD 2WZKA 4APFB 4F52A 4N9F3 1U6GA 3DPLC 1LDKA 4AP2B 4A64A 3DQVC 4JGHD 1LDJA
chains in the Genus database with same CATH superfamily
4P5OA 1LDKB 4HXIB 4APFB 2WZKA 2B1EA 3CPZA 4A64A 4EOZB 2PFVA 2XU0A 3RRCA 5F3JA 4N9F3 1U6GA 4AP2B 4NUUA 4YFSA 3DQVC 3BQIA 1LDJA 4NUVA 2WAUA 2Y8DA 3DPLC 3RTRA 3BQLA 4F52A 1LDKA 3CMLA 4JGHD 4WQOD 3BQKA
chains in the Genus database with same CATH topology
4P5OA 1LDKB 3RTRA 4EOZB 4HXIB 4WQOD 2WZKA 4APFB 4F52A 4N9F3 1U6GA 3DPLC 1LDKA 4AP2B 4A64A 3DQVC 4JGHD 1LDJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P5O A;  1LDK B;  3RTR A;  4EOZ B;  4HXI B;  4WQO D;  2WZK A;  4APF B;  4F52 A;  4N9F 3;  1U6G A;  3DPL C;  1LDK A;  4AP2 B;  4A64 A;  3DQV C;  4JGH D;  1LDJ A; 
#chains in the Genus database with same CATH topology
 4P5O A;  1LDK B;  4HXI B;  4APF B;  2WZK A;  2B1E A;  3CPZ A;  4A64 A;  4EOZ B;  2PFV A;  2XU0 A;  3RRC A;  5F3J A;  4N9F 3;  1U6G A;  4AP2 B;  4NUU A;  4YFS A;  3DQV C;  3BQI A;  1LDJ A;  4NUV A;  2WAU A;  2Y8D A;  3DPL C;  3RTR A;  3BQL A;  4F52 A;  1LDK A;  3CML A;  4JGH D;  4WQO D;  3BQK A; 
#chains in the Genus database with same CATH homology
 4P5O A;  1LDK B;  3RTR A;  4EOZ B;  4HXI B;  4WQO D;  2WZK A;  4APF B;  4F52 A;  4N9F 3;  1U6G A;  3DPL C;  1LDK A;  4AP2 B;  4A64 A;  3DQV C;  4JGH D;  1LDJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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