1LDKA

Structure of the cul1-rbx1-skp1-f boxskp2 scf ubiquitin ligase complex
Total Genus 129
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
396
structure length
358
Chain Sequence
IGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ligase
molecule keywords CULLIN HOMOLOG
publication title Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex.
pubmed doi rcsb
source organism Homo sapiens
total genus 129
structure length 358
sequence length 396
ec nomenclature
pdb deposition date 2002-04-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1310.10 Mainly Alpha Up-down Bundle 5 helical Cullin repeat like Cullin Repeats 1ldkA02
1.20.1310.10 Mainly Alpha Up-down Bundle 5 helical Cullin repeat like Cullin Repeats 1ldkA01
1.20.1310.10 Mainly Alpha Up-down Bundle 5 helical Cullin repeat like Cullin Repeats 1ldkA03
4N9F3 3RTRA 1U6GA 2WZKA 4JGHD 4WQOD 4A64A 4APFB 4HXIB 1LDKA 1LDJA 3DQVC 4P5OA 3DPLC 4EOZB 4F52A 4AP2B 1LDKB
chains in the Genus database with same CATH superfamily
2WZKA 2Y8DA 3CMLA 3DQVC 4EOZB 4AP2B 4NUVA 3RRCA 4YFSA 3RTRA 4WQOD 4A64A 1LDJA 4F52A 2WAUA 4JGHD 3BQLA 4HXIB 1LDKA 3BQIA 3DPLC 1LDKB 2PFVA 3BQKA 2XU0A 4N9F3 4NUUA 1U6GA 4APFB 3CPZA 4P5OA 5F3JA 2B1EA
chains in the Genus database with same CATH topology
4N9F3 3RTRA 1U6GA 2WZKA 4JGHD 4WQOD 4A64A 4APFB 4HXIB 1LDKA 1LDJA 3DQVC 4P5OA 3DPLC 4EOZB 4F52A 4AP2B 1LDKB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N9F 3;  3RTR A;  1U6G A;  2WZK A;  4JGH D;  4WQO D;  4A64 A;  4APF B;  4HXI B;  1LDK A;  1LDJ A;  3DQV C;  4P5O A;  3DPL C;  4EOZ B;  4F52 A;  4AP2 B;  1LDK B; 
#chains in the Genus database with same CATH topology
 2WZK A;  2Y8D A;  3CML A;  3DQV C;  4EOZ B;  4AP2 B;  4NUV A;  3RRC A;  4YFS A;  3RTR A;  4WQO D;  4A64 A;  1LDJ A;  4F52 A;  2WAU A;  4JGH D;  3BQL A;  4HXI B;  1LDK A;  3BQI A;  3DPL C;  1LDK B;  2PFV A;  3BQK A;  2XU0 A;  4N9F 3;  4NUU A;  1U6G A;  4APF B;  3CPZ A;  4P5O A;  5F3J A;  2B1E A; 
#chains in the Genus database with same CATH homology
 4N9F 3;  3RTR A;  1U6G A;  2WZK A;  4JGH D;  4WQO D;  4A64 A;  4APF B;  4HXI B;  1LDK A;  1LDJ A;  3DQV C;  4P5O A;  3DPL C;  4EOZ B;  4F52 A;  4AP2 B;  1LDK B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...