1LDKD

Structure of the cul1-rbx1-skp1-f boxskp2 scf ubiquitin ligase complex
Total Genus 27
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
133
structure length
118
Chain Sequence
PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords CULLIN HOMOLOG
publication title Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex.
pubmed doi rcsb
source organism Homo sapiens
total genus 27
structure length 118
sequence length 133
ec nomenclature
pdb deposition date 2002-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 1ldkD00
4B9KE 5BXDA 4I6JC 1R2BA 4WQOC 4B9KB 4W9DB 3HVEA 4AWJB 2P1MA 4JTCB 2VKPA 4W9FB 4U2MA 3BIMA 5H7HA 2IZVC 3DCGB 4W9EB 3M52A 5FTAA 1FQVB 4W9HH 3OHVA 4W9JB 3HU6A 3OGMA 1LM8C 1BUOA 1EODA 1P22B 2VPKA 2A79B 4CXIA 3L2OA 4W9CB 2C9WC 1R29A 4EOZA 1EXBE 1A68A 4N9F5 5H7GA 1LQBB 3M4TA 2Q81A 4W9HB 2E32B 3ZNGB 1QDVA 3WSOB 2P1PA 5A6RA 4BGCA 1DSXA 4CXTA 2JZ3C 3ZRCB 3KVTA 3OGLA 4J8ZA 4CP3A 4AJYC 5DADA 3C6PA 5A15A 1CS3A 1QDWA 1S1GA 1FS2B 3LBZA 2IHCA 4W9KB 2P1OA 1LDKD 5IBKA 2OVQA 4W9GB 4HXIA 2NN2A 1EOFA 3I3NA 1FS1B 1EOEA 3E4UA 3OGKA 4CRHA 3M5BA 2R9RB 2Z8HA 4U2NA 4APFA 2YY9A 2IF5A 3ZRFB 3OHUA 3LNMB 2ASSA 3HTMA 2OVPA 5DAFA 2NZ0B 2P1NA 3HQIA 2FNJC 5BXBA 3ZUNB 3C6OA 1T1DA 3MKSA 4JTAB 4JTDB 3GA1A 4UIJA 1HV2A 5EUPA 4BKTB 2I2RA 5BO4C 5BXHA 1VCBB 4BKSB 4U77A 4W9LB 4UYIA 3HVEB 3ZKJB 2P1QA 4CXJA 1NN7A 3C6NA 4ZOUA 3FKCA 3ZTCB 2PPIA 1NEXA 2MA9C 4B95B 3LUTB 4JGHC 5JH5B 5HZGC 2ASTA 1R28A 5HYWB 3B84A 5LLIB 2E31B 2OVRA 4W9IB 3DRZA 3V7DA 3ZTDB 3M8VA 4AP2A
chains in the Genus database with same CATH superfamily
4B9KE 5BXDA 4I6JC 1R2BA 4WQOC 4B9KB 4W9DB 3HVEA 4AWJB 2P1MA 4JTCB 2VKPA 4W9FB 4U2MA 3BIMA 5H7HA 2IZVC 3DCGB 4W9EB 3M52A 5FTAA 1FQVB 4W9HH 3OHVA 4W9JB 3HU6A 3OGMA 1LM8C 1BUOA 1EODA 1P22B 2VPKA 2A79B 4CXIA 3L2OA 4W9CB 2C9WC 1R29A 4EOZA 1EXBE 1A68A 4N9F5 5H7GA 1LQBB 3M4TA 2Q81A 4W9HB 2E32B 3ZNGB 1QDVA 3WSOB 2P1PA 5A6RA 4BGCA 1DSXA 4CXTA 2JZ3C 3ZRCB 3KVTA 3OGLA 4J8ZA 4CP3A 4AJYC 5DADA 3C6PA 5A15A 1CS3A 1QDWA 1S1GA 1FS2B 3LBZA 2IHCA 4W9KB 2P1OA 1LDKD 4ZGCA 2OVQA 4W9GB 5IBKA 4HXIA 2NN2A 1EOFA 3I3NA 1FS1B 1EOEA 3E4UA 3OGKA 4CRHA 3M5BA 2R9RB 2Z8HA 4U2NA 4APFA 2YY9A 2IF5A 3ZRFB 3OHUA 3LNMB 4YY8A 2ASSA 3HTMA 2OVPA 5DAFA 2NZ0B 2P1NA 3HQIA 2FNJC 5BXBA 3ZUNB 3C6OA 1T1DA 3MKSA 4JTAB 4JTDB 3GA1A 4UIJA 1HV2A 5EUPA 4BKTB 2I2RA 5BO4C 5BXHA 1VCBB 4BKSB 4U77A 4W9LB 4UYIA 3HVEB 3ZKJB 2P1QA 4CXJA 1NN7A 3C6NA 4ZOUA 3FKCA 3ZTCB 2PPIA 1NEXA 2MA9C 4B95B 3LUTB 4JGHC 3DRXA 5JH5B 5HZGC 2ASTA 1R28A 5HYWB 3B84A 5LLIB 2E31B 3DRYA 2OVRA 4W9IB 3DRZA 3V7DA 3ZTDB 3M8VA 4AP2A
chains in the Genus database with same CATH topology
4B9KE 5BXDA 4I6JC 1R2BA 4WQOC 4B9KB 4W9DB 3HVEA 4AWJB 2P1MA 4JTCB 2VKPA 4W9FB 4U2MA 3BIMA 5H7HA 2IZVC 3DCGB 4W9EB 3M52A 5FTAA 1FQVB 4W9HH 3OHVA 4W9JB 3HU6A 3OGMA 1LM8C 1BUOA 1EODA 1P22B 2VPKA 2A79B 4CXIA 3L2OA 4W9CB 2C9WC 1R29A 4EOZA 1EXBE 1A68A 4N9F5 5H7GA 1LQBB 3M4TA 2Q81A 4W9HB 2E32B 3ZNGB 1QDVA 3WSOB 2P1PA 5A6RA 4BGCA 1DSXA 4CXTA 2JZ3C 3ZRCB 3KVTA 3OGLA 4J8ZA 4CP3A 4AJYC 5DADA 3C6PA 5A15A 1CS3A 1QDWA 1S1GA 1FS2B 3LBZA 2IHCA 4W9KB 2P1OA 1LDKD 4ZGCA 2OVQA 4W9GB 5IBKA 4HXIA 2NN2A 1EOFA 3I3NA 1FS1B 1EOEA 3E4UA 3OGKA 4CRHA 3M5BA 2R9RB 2Z8HA 4U2NA 4APFA 2YY9A 2IF5A 3ZRFB 3OHUA 3LNMB 4YY8A 2ASSA 3HTMA 2OVPA 5DAFA 2NZ0B 2P1NA 3HQIA 2FNJC 5BXBA 3ZUNB 3C6OA 1T1DA 3MKSA 4JTAB 4JTDB 3GA1A 4UIJA 1HV2A 5EUPA 4BKTB 2I2RA 5BO4C 5BXHA 1VCBB 4BKSB 4U77A 4W9LB 4UYIA 3HVEB 3ZKJB 2P1QA 4CXJA 1NN7A 3C6NA 4ZOUA 3FKCA 3ZTCB 2PPIA 1NEXA 2MA9C 4B95B 3LUTB 4JGHC 3DRXA 5JH5B 5HZGC 2ASTA 1R28A 5HYWB 3B84A 5LLIB 2E31B 3DRYA 2OVRA 4W9IB 3DRZA 3V7DA 3ZTDB 3M8VA 4AP2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B9K E;  5BXD A;  4I6J C;  1R2B A;  4WQO C;  4B9K B;  4W9D B;  3HVE A;  4AWJ B;  2P1M A;  4JTC B;  2VKP A;  4W9F B;  4U2M A;  3BIM A;  5H7H A;  2IZV C;  3DCG B;  4W9E B;  3M52 A;  5FTA A;  1FQV B;  4W9H H;  3OHV A;  4W9J B;  3HU6 A;  3OGM A;  1LM8 C;  1BUO A;  1EOD A;  1P22 B;  2VPK A;  2A79 B;  4CXI A;  3L2O A;  4W9C B;  2C9W C;  1R29 A;  4EOZ A;  1EXB E;  1A68 A;  4N9F 5;  5H7G A;  1LQB B;  3M4T A;  2Q81 A;  4W9H B;  2E32 B;  3ZNG B;  1QDV A;  3WSO B;  2P1P A;  5A6R A;  4BGC A;  1DSX A;  4CXT A;  2JZ3 C;  3ZRC B;  3KVT A;  3OGL A;  4J8Z A;  4CP3 A;  4AJY C;  5DAD A;  3C6P A;  5A15 A;  1CS3 A;  1QDW A;  1S1G A;  1FS2 B;  3LBZ A;  2IHC A;  4W9K B;  2P1O A;  1LDK D;  5IBK A;  2OVQ A;  4W9G B;  4HXI A;  2NN2 A;  1EOF A;  3I3N A;  1FS1 B;  1EOE A;  3E4U A;  3OGK A;  4CRH A;  3M5B A;  2R9R B;  2Z8H A;  4U2N A;  4APF A;  2YY9 A;  2IF5 A;  3ZRF B;  3OHU A;  3LNM B;  2ASS A;  3HTM A;  2OVP A;  5DAF A;  2NZ0 B;  2P1N A;  3HQI A;  2FNJ C;  5BXB A;  3ZUN B;  3C6O A;  1T1D A;  3MKS A;  4JTA B;  4JTD B;  3GA1 A;  4UIJ A;  1HV2 A;  5EUP A;  4BKT B;  2I2R A;  5BO4 C;  5BXH A;  1VCB B;  4BKS B;  4U77 A;  4W9L B;  4UYI A;  3HVE B;  3ZKJ B;  2P1Q A;  4CXJ A;  1NN7 A;  3C6N A;  4ZOU A;  3FKC A;  3ZTC B;  2PPI A;  1NEX A;  2MA9 C;  4B95 B;  3LUT B;  4JGH C;  5JH5 B;  5HZG C;  2AST A;  1R28 A;  5HYW B;  3B84 A;  5LLI B;  2E31 B;  2OVR A;  4W9I B;  3DRZ A;  3V7D A;  3ZTD B;  3M8V A;  4AP2 A; 
#chains in the Genus database with same CATH topology
 4B9K E;  5BXD A;  4I6J C;  1R2B A;  4WQO C;  4B9K B;  4W9D B;  3HVE A;  4AWJ B;  2P1M A;  4JTC B;  2VKP A;  4W9F B;  4U2M A;  3BIM A;  5H7H A;  2IZV C;  3DCG B;  4W9E B;  3M52 A;  5FTA A;  1FQV B;  4W9H H;  3OHV A;  4W9J B;  3HU6 A;  3OGM A;  1LM8 C;  1BUO A;  1EOD A;  1P22 B;  2VPK A;  2A79 B;  4CXI A;  3L2O A;  4W9C B;  2C9W C;  1R29 A;  4EOZ A;  1EXB E;  1A68 A;  4N9F 5;  5H7G A;  1LQB B;  3M4T A;  2Q81 A;  4W9H B;  2E32 B;  3ZNG B;  1QDV A;  3WSO B;  2P1P A;  5A6R A;  4BGC A;  1DSX A;  4CXT A;  2JZ3 C;  3ZRC B;  3KVT A;  3OGL A;  4J8Z A;  4CP3 A;  4AJY C;  5DAD A;  3C6P A;  5A15 A;  1CS3 A;  1QDW A;  1S1G A;  1FS2 B;  3LBZ A;  2IHC A;  4W9K B;  2P1O A;  1LDK D;  4ZGC A;  2OVQ A;  4W9G B;  5IBK A;  4HXI A;  2NN2 A;  1EOF A;  3I3N A;  1FS1 B;  1EOE A;  3E4U A;  3OGK A;  4CRH A;  3M5B A;  2R9R B;  2Z8H A;  4U2N A;  4APF A;  2YY9 A;  2IF5 A;  3ZRF B;  3OHU A;  3LNM B;  4YY8 A;  2ASS A;  3HTM A;  2OVP A;  5DAF A;  2NZ0 B;  2P1N A;  3HQI A;  2FNJ C;  5BXB A;  3ZUN B;  3C6O A;  1T1D A;  3MKS A;  4JTA B;  4JTD B;  3GA1 A;  4UIJ A;  1HV2 A;  5EUP A;  4BKT B;  2I2R A;  5BO4 C;  5BXH A;  1VCB B;  4BKS B;  4U77 A;  4W9L B;  4UYI A;  3HVE B;  3ZKJ B;  2P1Q A;  4CXJ A;  1NN7 A;  3C6N A;  4ZOU A;  3FKC A;  3ZTC B;  2PPI A;  1NEX A;  2MA9 C;  4B95 B;  3LUT B;  4JGH C;  3DRX A;  5JH5 B;  5HZG C;  2AST A;  1R28 A;  5HYW B;  3B84 A;  5LLI B;  2E31 B;  3DRY A;  2OVR A;  4W9I B;  3DRZ A;  3V7D A;  3ZTD B;  3M8V A;  4AP2 A; 
#chains in the Genus database with same CATH homology
 4B9K E;  5BXD A;  4I6J C;  1R2B A;  4WQO C;  4B9K B;  4W9D B;  3HVE A;  4AWJ B;  2P1M A;  4JTC B;  2VKP A;  4W9F B;  4U2M A;  3BIM A;  5H7H A;  2IZV C;  3DCG B;  4W9E B;  3M52 A;  5FTA A;  1FQV B;  4W9H H;  3OHV A;  4W9J B;  3HU6 A;  3OGM A;  1LM8 C;  1BUO A;  1EOD A;  1P22 B;  2VPK A;  2A79 B;  4CXI A;  3L2O A;  4W9C B;  2C9W C;  1R29 A;  4EOZ A;  1EXB E;  1A68 A;  4N9F 5;  5H7G A;  1LQB B;  3M4T A;  2Q81 A;  4W9H B;  2E32 B;  3ZNG B;  1QDV A;  3WSO B;  2P1P A;  5A6R A;  4BGC A;  1DSX A;  4CXT A;  2JZ3 C;  3ZRC B;  3KVT A;  3OGL A;  4J8Z A;  4CP3 A;  4AJY C;  5DAD A;  3C6P A;  5A15 A;  1CS3 A;  1QDW A;  1S1G A;  1FS2 B;  3LBZ A;  2IHC A;  4W9K B;  2P1O A;  1LDK D;  4ZGC A;  2OVQ A;  4W9G B;  5IBK A;  4HXI A;  2NN2 A;  1EOF A;  3I3N A;  1FS1 B;  1EOE A;  3E4U A;  3OGK A;  4CRH A;  3M5B A;  2R9R B;  2Z8H A;  4U2N A;  4APF A;  2YY9 A;  2IF5 A;  3ZRF B;  3OHU A;  3LNM B;  4YY8 A;  2ASS A;  3HTM A;  2OVP A;  5DAF A;  2NZ0 B;  2P1N A;  3HQI A;  2FNJ C;  5BXB A;  3ZUN B;  3C6O A;  1T1D A;  3MKS A;  4JTA B;  4JTD B;  3GA1 A;  4UIJ A;  1HV2 A;  5EUP A;  4BKT B;  2I2R A;  5BO4 C;  5BXH A;  1VCB B;  4BKS B;  4U77 A;  4W9L B;  4UYI A;  3HVE B;  3ZKJ B;  2P1Q A;  4CXJ A;  1NN7 A;  3C6N A;  4ZOU A;  3FKC A;  3ZTC B;  2PPI A;  1NEX A;  2MA9 C;  4B95 B;  3LUT B;  4JGH C;  3DRX A;  5JH5 B;  5HZG C;  2AST A;  1R28 A;  5HYW B;  3B84 A;  5LLI B;  2E31 B;  3DRY A;  2OVR A;  4W9I B;  3DRZ A;  3V7D A;  3ZTD B;  3M8V A;  4AP2 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...