1LJ0A

Structure of quintuple mutant of the rat outer mitocondrial cytochrome b5.
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
89
structure length
89
Chain Sequence
GSDPAVTYYRLEEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAREMSKQYYIGDVHPNDLKPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Cytochrome B5 outer mitochondrial membrane isoform
publication title Toward engineering the stability and hemin binding properties of microsomal cytochromes b5 into rat outer mitochondrial cytochrome b5: Examining the influence of residues 25 and 71.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 26
structure length 89
sequence length 89
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2002-04-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1lj0A00
4HILA 1J0QA 1ES1A 1LDCA 1LJ0A 4X8YA 1U9UA 2AXXA 3NERA 1IETA 3LF5A 3MUSA 1AW3A 1J03A 1BLVA 4HINA 1U9MA 2KEOA 1CXYA 1M2IA 1CYOA 2I89A 1SOXA 1F03A 2M33A 3OZZB 2OZ0A 3X33A 1LTDA 3X34A 3X35A 1I87A 1IEUA 1HKOA 1NX7A 2IBJA 3X32A 1LCOA 1T0GA 1LR6A 1M2MA 1X3XA 2I96A 1DO9A 1EHBA 1FCBA 4B8NA 1MJ4A 1M20A 3KS0A 1B5AA 1SH4A 1AQAA 1EUEA 1I5UA 1LQXA 1F04A 1I8CA 1B5MA 1M59A 1AXXA 1JEXA 1IB7A 1B5BA 1KBIA 1BFXA 1ICCA 1MNYA 1AWPA
chains in the Genus database with same CATH superfamily
4HILA 1J0QA 1ES1A 1LDCA 1LJ0A 4X8YA 1U9UA 2AXXA 3NERA 1IETA 3LF5A 3MUSA 1AW3A 1J03A 1BLVA 4HINA 1U9MA 2KEOA 1CXYA 1M2IA 1CYOA 2I89A 1SOXA 1F03A 2M33A 3OZZB 2OZ0A 3X33A 1LTDA 3X34A 3X35A 1I87A 1IEUA 1HKOA 1NX7A 2IBJA 3X32A 1LCOA 1T0GA 1LR6A 1M2MA 1X3XA 2I96A 1DO9A 1EHBA 1FCBA 4B8NA 1MJ4A 1M20A 3KS0A 1B5AA 1SH4A 1AQAA 1EUEA 1I5UA 1LQXA 1F04A 1I8CA 1B5MA 1M59A 1AXXA 1JEXA 1IB7A 1B5BA 1KBIA 1BFXA 1ICCA 1MNYA 1AWPA
chains in the Genus database with same CATH topology
4HILA 1J0QA 1ES1A 1LDCA 1LJ0A 4X8YA 1U9UA 2AXXA 3NERA 1IETA 3LF5A 3MUSA 1AW3A 1J03A 1BLVA 4HINA 1U9MA 2KEOA 1CXYA 1M2IA 1CYOA 2I89A 1SOXA 1F03A 2M33A 3OZZB 2OZ0A 3X33A 1LTDA 3X34A 3X35A 1I87A 1IEUA 1HKOA 1NX7A 2IBJA 3X32A 1LCOA 1T0GA 1LR6A 1M2MA 1X3XA 2I96A 1DO9A 1EHBA 1FCBA 4B8NA 1MJ4A 1M20A 3KS0A 1B5AA 1SH4A 1AQAA 1EUEA 1I5UA 1LQXA 1F04A 1I8CA 1B5MA 1M59A 1AXXA 1JEXA 1IB7A 1B5BA 1KBIA 1BFXA 1ICCA 1MNYA 1AWPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HIL A;  1J0Q A;  1ES1 A;  1LDC A;  1LJ0 A;  4X8Y A;  1U9U A;  2AXX A;  3NER A;  1IET A;  3LF5 A;  3MUS A;  1AW3 A;  1J03 A;  1BLV A;  4HIN A;  1U9M A;  2KEO A;  1CXY A;  1M2I A;  1CYO A;  2I89 A;  1SOX A;  1F03 A;  2M33 A;  3OZZ B;  2OZ0 A;  3X33 A;  1LTD A;  3X34 A;  3X35 A;  1I87 A;  1IEU A;  1HKO A;  1NX7 A;  2IBJ A;  3X32 A;  1LCO A;  1T0G A;  1LR6 A;  1M2M A;  1X3X A;  2I96 A;  1DO9 A;  1EHB A;  1FCB A;  4B8N A;  1MJ4 A;  1M20 A;  3KS0 A;  1B5A A;  1SH4 A;  1AQA A;  1EUE A;  1I5U A;  1LQX A;  1F04 A;  1I8C A;  1B5M A;  1M59 A;  1AXX A;  1JEX A;  1IB7 A;  1B5B A;  1KBI A;  1BFX A;  1ICC A;  1MNY A;  1AWP A; 
#chains in the Genus database with same CATH topology
 4HIL A;  1J0Q A;  1ES1 A;  1LDC A;  1LJ0 A;  4X8Y A;  1U9U A;  2AXX A;  3NER A;  1IET A;  3LF5 A;  3MUS A;  1AW3 A;  1J03 A;  1BLV A;  4HIN A;  1U9M A;  2KEO A;  1CXY A;  1M2I A;  1CYO A;  2I89 A;  1SOX A;  1F03 A;  2M33 A;  3OZZ B;  2OZ0 A;  3X33 A;  1LTD A;  3X34 A;  3X35 A;  1I87 A;  1IEU A;  1HKO A;  1NX7 A;  2IBJ A;  3X32 A;  1LCO A;  1T0G A;  1LR6 A;  1M2M A;  1X3X A;  2I96 A;  1DO9 A;  1EHB A;  1FCB A;  4B8N A;  1MJ4 A;  1M20 A;  3KS0 A;  1B5A A;  1SH4 A;  1AQA A;  1EUE A;  1I5U A;  1LQX A;  1F04 A;  1I8C A;  1B5M A;  1M59 A;  1AXX A;  1JEX A;  1IB7 A;  1B5B A;  1KBI A;  1BFX A;  1ICC A;  1MNY A;  1AWP A; 
#chains in the Genus database with same CATH homology
 4HIL A;  1J0Q A;  1ES1 A;  1LDC A;  1LJ0 A;  4X8Y A;  1U9U A;  2AXX A;  3NER A;  1IET A;  3LF5 A;  3MUS A;  1AW3 A;  1J03 A;  1BLV A;  4HIN A;  1U9M A;  2KEO A;  1CXY A;  1M2I A;  1CYO A;  2I89 A;  1SOX A;  1F03 A;  2M33 A;  3OZZ B;  2OZ0 A;  3X33 A;  1LTD A;  3X34 A;  3X35 A;  1I87 A;  1IEU A;  1HKO A;  1NX7 A;  2IBJ A;  3X32 A;  1LCO A;  1T0G A;  1LR6 A;  1M2M A;  1X3X A;  2I96 A;  1DO9 A;  1EHB A;  1FCB A;  4B8N A;  1MJ4 A;  1M20 A;  3KS0 A;  1B5A A;  1SH4 A;  1AQA A;  1EUE A;  1I5U A;  1LQX A;  1F04 A;  1I8C A;  1B5M A;  1M59 A;  1AXX A;  1JEX A;  1IB7 A;  1B5B A;  1KBI A;  1BFX A;  1ICC A;  1MNY A;  1AWP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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