1LN4A

Crystal structure of e. coli yhby
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
98
structure length
98
Chain Sequence
MDLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords Hypothetical protein yhbY
publication title Crystal structure of E. coli YhbY: a representative of a novel class of RNA binding proteins
pubmed doi rcsb
source organism Escherichia coli
total genus 32
structure length 98
sequence length 98
ec nomenclature
pdb deposition date 2002-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01985 CRS1_YhbY CRS1 / YhbY (CRM) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.60 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 YhbY-like 1ln4A00
1JO0A 1RQ8A 1LN4A
chains in the Genus database with same CATH superfamily
3IABA 3IABB 2L8YA 4YDQA 2LXRA 2EH1A 4FCXA 1NJ8A 1RQ8A 3ZIGA 3VTHA 2H9UA 1JO0A 3TSPA 1UDVA 3ZIEA 2CRQA 4K88A 3TSUA 4HVZA 2IFEA 4Q15A 2A2YA 1NJ2A 1VM0A 3VTIA 3LVJC 4FBQA 1TIGA 1NJ5A 2Q3VA 1HC7A 3TTFA 1DCJA 1Y9XA 1XEZA 2Z7CA 3ZIIA 2EK0A 2P9BA 1NFHA 1NJ6A 4YKEA 4Z9EA 1S8EA 1H0YA 1PAVA 4K86A 3T1IA 1II7A 3QKBA 1VR4A 3DSCA 1Y2IA 2LN3A 4K87A 4OLFA 4HD0A 3TTDA 1H4TA 3TTCA 4TWAA 3DSDA 1H0XA 1NFJA 2M71A 4EO0A 1JDQA 3TOEA 2Y1BA 1H4QA 4FBKA 4FBWA 3HZ7A 3TSQA 1LN4A 3LVKB 1JE3A 3IALA 2GTCA 4NZTM 1NH9A 2BKYX 3ZIHA 1H4SA 4HVCA 3U6YA 1NJ1A 4NZRM 3WBMA 4NCXA 3P04A 4WI1A
chains in the Genus database with same CATH topology
1JO0A 1RQ8A 1LN4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JO0 A;  1RQ8 A;  1LN4 A; 
#chains in the Genus database with same CATH topology
 3IAB A;  3IAB B;  2L8Y A;  4YDQ A;  2LXR A;  2EH1 A;  4FCX A;  1NJ8 A;  1RQ8 A;  3ZIG A;  3VTH A;  2H9U A;  1JO0 A;  3TSP A;  1UDV A;  3ZIE A;  2CRQ A;  4K88 A;  3TSU A;  4HVZ A;  2IFE A;  4Q15 A;  2A2Y A;  1NJ2 A;  1VM0 A;  3VTI A;  3LVJ C;  4FBQ A;  1TIG A;  1NJ5 A;  2Q3V A;  1HC7 A;  3TTF A;  1DCJ A;  1Y9X A;  1XEZ A;  2Z7C A;  3ZII A;  2EK0 A;  2P9B A;  1NFH A;  1NJ6 A;  4YKE A;  4Z9E A;  1S8E A;  1H0Y A;  1PAV A;  4K86 A;  3T1I A;  1II7 A;  3QKB A;  1VR4 A;  3DSC A;  1Y2I A;  2LN3 A;  4K87 A;  4OLF A;  4HD0 A;  3TTD A;  1H4T A;  3TTC A;  4TWA A;  3DSD A;  1H0X A;  1NFJ A;  2M71 A;  4EO0 A;  1JDQ A;  3TOE A;  2Y1B A;  1H4Q A;  4FBK A;  4FBW A;  3HZ7 A;  3TSQ A;  1LN4 A;  3LVK B;  1JE3 A;  3IAL A;  2GTC A;  4NZT M;  1NH9 A;  2BKY X;  3ZIH A;  1H4S A;  4HVC A;  3U6Y A;  1NJ1 A;  4NZR M;  3WBM A;  4NCX A;  3P04 A;  4WI1 A; 
#chains in the Genus database with same CATH homology
 1JO0 A;  1RQ8 A;  1LN4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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