1LNLA

Structure of deoxygenated hemocyanin from rapana thomasiana
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
408
structure length
408
Chain Sequence
GHRNLVRKSVRNLSPAERASLVAALKSLQEDSSADGFQSLASFHAQPPLCPAPAANKAFACCVHGMATFPEWHRLYTVQFEDALRRHGSVVGIPYWDTVVPQEDLPAFFNDEIWDDALFHANFTNPFNGADIDFNHQKIARDINVDKLAKEGPKGYDTWSFKQYIYALEQEDYCDFEVQFEIAHNAIHAWVGGTEEYSMGHLHYASYDPVFILHHSNTDRLFALWQELQKFRGHDPNEVNCALEMMREPLKPFSFGAPYNLNPTTKEHSKPEDTFDYKGHFHYEYDHLELQGMNVQRLHDYINQQKEADRVFAGFLLEGIGTSAHLDFSICAIDGECTHAGYFDVLGGSLETPWQFDRLYKYEITDVLESKGLDVHDVFDIKITQTSWDNEDISTDRFPPPSVIYVPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxygen storage/transport
molecule keywords hemocyanin
publication title The structure of a functional unit from the wall of a gastropod hemocyanin offers a possible mechanism for cooperativity
pubmed doi rcsb
total genus 98
structure length 408
sequence length 408
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2002-05-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00264 Tyrosinase Common central domain of tyrosinase
A PF14830 Haemocyan_bet_s Haemocyanin beta-sandwich
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1280.10 Mainly Alpha Orthogonal Bundle di-copper center containing domain from catechol oxidase Di-copper center containing domain from catechol oxidase 1lnlA01
2.60.310.10 Mainly Beta Sandwich Hemocyanin; Chain: A, domain 2 Haemocyanin C-terminal domain 1lnlA02
3W6QA 2ZMXA 1WX4A 4J3RA 1HC1A 1WX5A 1BT1A 3AWYA 2ZWFA 3AWUA 3NPYA 4Z0ZA 1WX2A 3GWJA 2Y9WA 2ZMYA 3AWSA 4L37A 4J6TA 4J3QA 3AWWA 4J3PA 2AHLA 4HD6A 3AWXA 1LLAA 1WXCA 5I3AA 3W6WA 3AX0A 1HCYA 3NM8A 4J6UA 4YZWA 2Y9XA 3AWVA 2P3XA 3QJOA 4P6SA 3NQ5A 4P6RA 3NQ0A 4J6VA 1OXYA 3HHSB 2ZWDA 2ZMZA 3AWTA 3HHSA 4HD7A 5I3BA 4HD4A 1LL1A 4Z10A 3WKYA 1NOLA 3NTMA 3WJMB 1LNLA 3WJMA 1BT3A 3AWZA 4Z0YA 1BT2A 2ZWGA 4P6TA 4OUAB 1BUGA 4D87A 2ZWEA 4OUAA 5I38A 4L37B 2AHKA 5CE9A 3NQ1A 1JS8A
chains in the Genus database with same CATH superfamily
3W6QA 2ZMXA 1WX4A 4J3RA 1HC1A 1WX5A 1BT1A 3AWYA 2ZWFA 3AWUA 3NPYA 4Z0ZA 1WX2A 3GWJA 2Y9WA 2ZMYA 3AWSA 4L37A 4J6TA 4J3QA 3AWWA 4J3PA 2AHLA 4HD6A 3AWXA 1LLAA 1WXCA 5I3AA 3W6WA 3AX0A 1HCYA 3NM8A 4J6UA 4YZWA 2Y9XA 3AWVA 2P3XA 3QJOA 4P6SA 3NQ5A 4P6RA 3NQ0A 4J6VA 1OXYA 3HHSB 2ZWDA 2ZMZA 3AWTA 3HHSA 4HD7A 5I3BA 4HD4A 1LL1A 4Z10A 3WKYA 1NOLA 3NTMA 3WJMB 1LNLA 3WJMA 1BT3A 3AWZA 4Z0YA 1BT2A 2ZWGA 4P6TA 4OUAB 1BUGA 4D87A 2ZWEA 4OUAA 5I38A 4L37B 2AHKA 5CE9A 3NQ1A 1JS8A
chains in the Genus database with same CATH topology
3W6QA 2ZMXA 1WX4A 4J3RA 1HC1A 1WX5A 1BT1A 3AWYA 2ZWFA 3AWUA 3NPYA 4Z0ZA 1WX2A 3GWJA 2Y9WA 2ZMYA 3AWSA 4L37A 4J6TA 4J3QA 3AWWA 4J3PA 2AHLA 4HD6A 3AWXA 1LLAA 1WXCA 5I3AA 3W6WA 3AX0A 1HCYA 3NM8A 4J6UA 4YZWA 2Y9XA 3AWVA 2P3XA 3QJOA 4P6SA 3NQ5A 4P6RA 3NQ0A 4J6VA 1OXYA 3HHSB 2ZWDA 2ZMZA 3AWTA 3HHSA 4HD7A 5I3BA 4HD4A 1LL1A 4Z10A 3WKYA 1NOLA 3NTMA 3WJMB 1LNLA 3WJMA 1BT3A 3AWZA 4Z0YA 1BT2A 2ZWGA 4P6TA 4OUAB 1BUGA 4D87A 2ZWEA 4OUAA 5I38A 4L37B 2AHKA 5CE9A 3NQ1A 1JS8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3W6Q A;  2ZMX A;  1WX4 A;  4J3R A;  1HC1 A;  1WX5 A;  1BT1 A;  3AWY A;  2ZWF A;  3AWU A;  3NPY A;  4Z0Z A;  1WX2 A;  3GWJ A;  2Y9W A;  2ZMY A;  3AWS A;  4L37 A;  4J6T A;  4J3Q A;  3AWW A;  4J3P A;  2AHL A;  4HD6 A;  3AWX A;  1LLA A;  1WXC A;  5I3A A;  3W6W A;  3AX0 A;  1HCY A;  3NM8 A;  4J6U A;  4YZW A;  2Y9X A;  3AWV A;  2P3X A;  3QJO A;  4P6S A;  3NQ5 A;  4P6R A;  3NQ0 A;  4J6V A;  1OXY A;  3HHS B;  2ZWD A;  2ZMZ A;  3AWT A;  3HHS A;  4HD7 A;  5I3B A;  4HD4 A;  1LL1 A;  4Z10 A;  3WKY A;  1NOL A;  3NTM A;  3WJM B;  1LNL A;  3WJM A;  1BT3 A;  3AWZ A;  4Z0Y A;  1BT2 A;  2ZWG A;  4P6T A;  4OUA B;  1BUG A;  4D87 A;  2ZWE A;  4OUA A;  5I38 A;  4L37 B;  2AHK A;  5CE9 A;  3NQ1 A;  1JS8 A; 
#chains in the Genus database with same CATH topology
 3W6Q A;  2ZMX A;  1WX4 A;  4J3R A;  1HC1 A;  1WX5 A;  1BT1 A;  3AWY A;  2ZWF A;  3AWU A;  3NPY A;  4Z0Z A;  1WX2 A;  3GWJ A;  2Y9W A;  2ZMY A;  3AWS A;  4L37 A;  4J6T A;  4J3Q A;  3AWW A;  4J3P A;  2AHL A;  4HD6 A;  3AWX A;  1LLA A;  1WXC A;  5I3A A;  3W6W A;  3AX0 A;  1HCY A;  3NM8 A;  4J6U A;  4YZW A;  2Y9X A;  3AWV A;  2P3X A;  3QJO A;  4P6S A;  3NQ5 A;  4P6R A;  3NQ0 A;  4J6V A;  1OXY A;  3HHS B;  2ZWD A;  2ZMZ A;  3AWT A;  3HHS A;  4HD7 A;  5I3B A;  4HD4 A;  1LL1 A;  4Z10 A;  3WKY A;  1NOL A;  3NTM A;  3WJM B;  1LNL A;  3WJM A;  1BT3 A;  3AWZ A;  4Z0Y A;  1BT2 A;  2ZWG A;  4P6T A;  4OUA B;  1BUG A;  4D87 A;  2ZWE A;  4OUA A;  5I38 A;  4L37 B;  2AHK A;  5CE9 A;  3NQ1 A;  1JS8 A; 
#chains in the Genus database with same CATH homology
 3W6Q A;  2ZMX A;  1WX4 A;  4J3R A;  1HC1 A;  1WX5 A;  1BT1 A;  3AWY A;  2ZWF A;  3AWU A;  3NPY A;  4Z0Z A;  1WX2 A;  3GWJ A;  2Y9W A;  2ZMY A;  3AWS A;  4L37 A;  4J6T A;  4J3Q A;  3AWW A;  4J3P A;  2AHL A;  4HD6 A;  3AWX A;  1LLA A;  1WXC A;  5I3A A;  3W6W A;  3AX0 A;  1HCY A;  3NM8 A;  4J6U A;  4YZW A;  2Y9X A;  3AWV A;  2P3X A;  3QJO A;  4P6S A;  3NQ5 A;  4P6R A;  3NQ0 A;  4J6V A;  1OXY A;  3HHS B;  2ZWD A;  2ZMZ A;  3AWT A;  3HHS A;  4HD7 A;  5I3B A;  4HD4 A;  1LL1 A;  4Z10 A;  3WKY A;  1NOL A;  3NTM A;  3WJM B;  1LNL A;  3WJM A;  1BT3 A;  3AWZ A;  4Z0Y A;  1BT2 A;  2ZWG A;  4P6T A;  4OUA B;  1BUG A;  4D87 A;  2ZWE A;  4OUA A;  5I38 A;  4L37 B;  2AHK A;  5CE9 A;  3NQ1 A;  1JS8 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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