The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
252
|
Knots found |
|
sequence length |
763
|
structure length |
763
|
Chain Sequence |
MRFNHFSIVDKNFDEQLAELDQLGFRWSVFWDEKKILKDFLIQSPSDMTALQATAELDVIEFLKSSIELDWEIFWNIALQLLDFVPNFDFEIGKAFEYAKNSNLPQIEAEMTTENIISAFYYLLCTRRKTGMILVEHWVSEGLLPLDNHYHFFNDKSLATFDSSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKSTEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPEGHAKHAFLHRGAHIYMNSWQSIDFSETINAYFVAKLLDRDLNLNLPPVILQENSKDQVWTMMNDFGANTQIKLPLGKTAVSFAQFDNNYDDETFKKYSKDFNVFKKDLFENKANEAVIDLELPSMLTINGPVELELRLKLNDTKGFLSAQILDFGQKKRLEDKVRVKDFKVLDRGRNFMLDDLVELPLVESPYQLVTKGFTNLQNQSLLTVSDLKADEWFTIKFELQPTIYHLEKADKLRVILYSTDFEHTVRDNRKVTYEIDLSQSKLIIPIESVKN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
molecule keywords |
X-PROLYL DIPEPTIDYL AMINOPEPTIDASE
|
publication title |
The Structural Basis for Catalysis and Specificity of the X-prolyl dipepdidyl
aminopeptidase from Lactococcus lactis
pubmed doi rcsb |
source organism |
Lactococcus lactis
|
molecule tags |
Hydrolase
|
total genus |
252
|
structure length |
763
|
sequence length |
763
|
other databases |
|
ec nomenclature |
ec
3.4.14.11: Xaa-Pro dipeptidyl-peptidase. |
pdb deposition date | 2002-05-03 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF02129 | Peptidase_S15 | X-Pro dipeptidyl-peptidase (S15 family) |
A | PF08530 | PepX_C | X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain |
A | PF09168 | PepX_N | X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Serum Albumin; Chain A, Domain 1 | Serum Albumin; Chain A, Domain 1 | ||
Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold |