1LOTA

Crystal structure of the complex of actin with vitamin d-binding protein
Total Genus 161
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
457
structure length
436
Chain Sequence
LERGRDYEKNKVCKEFSHLGKEDFTSLSLVLYSRKFPSGTFEQVSQLVKEVVSLTEACCAEGADPDCYDTRTSALSAKSCESNSPFPVHPHQPQEFPTYVEPTNDEICEAFRKDPKEYANQFMWEYSTNYGQAPLSLLVSYTKSYLSMVGSCCTSASPTVCFLKERLQLKHLSLLTTLSNRVCSQYAAYGEKKSRLSNLIKLAQKVPTADLEDVLPLAEDITNILSKCCESASEDCMAKELPEHTVKLCDNLSTKNSKFEDCCQEKTAMDVFVCTYFMPAAQLPELPDVELPTNKDVCDPGNTKVMDKYTFELSRRTHLPEVFLSKVLEPTLKSLGECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCADYSENTFTEYKKKLAERLKAKLPDATPTELAKLVNKRSDFASNCCSINSPPLYCDSEIDAELKNI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transport protein, structural protein
molecule keywords Vitamin D-binding protein
publication title Crystal structure of the complex between actin and human vitamin D-binding protein at 2.5 A resolution.
pubmed doi rcsb
total genus 161
structure length 436
sequence length 457
ec nomenclature
pdb deposition date 2002-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00273 Serum_albumin Serum albumin family
A PF09164 VitD-bind_III Vitamin D binding protein, domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1lotA02
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1lotA03
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1lotA01
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1lotA04
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1lotA05
3B9LA 2YDFA 4N0FD 2XW1A 1KXPD 4F5TA 2BX8A 1E7HA 1KW2A 5ID9A 2XSIA 2I2ZA 5HOZA 1LOTA 1TF0A 2BXAA 1UORA 4L8UA 1HK2A 2BXPA 3V03A 2XVWA 1HK5A 2BXOA 4LUFA 4LUHA 5IIUA 1J78A 5IIXA 4IW1A 4OR0A 3V09A 4S1YA 3LU8A 3JQZA 2BXGA 1E7BA 2XW0A 4IW2A 2BXHA 2VUFA 5IJEA 3JRYA 1MA9A 1E7GA 2BXQA 4G04A 1E7CA 1N5UA 4Z69A 3LU7A 1H9ZA 2BXBA 1GNJA 4L9QA 1E78A 4ZBQA 3CX9A 3UIVA 5IIHA 1E7IA 4N0UD 4L9KA 1E7FA 1HA2A 5IJFA 3SQJA 2XVVA 2BXNA 5DBYA 5ID7A 3LU6A 2BXFA 3B9MA 4G03A 4ZBRA 1J7EA 1HK3A 2XVQA 4OT2A 1GNIA 4PO0A 4LB2A 2BXKA 4F5VA 1BM0A 2VUEA 5DQFA 4E99A 4F5UA 3TDLA 1E7AA 2BXMA 1HK4A 4EMXA 2BXLA 4LB9A 3V08A 1E7EA 4HGMB 4K2CA 2BXCA 3A73A 1BJ5A 4LA0A 5GHKA 4J2VA 2XVUA 4JK4A 4K71A 2I30A 2BXIA 4BKEA 5FUOA 1AO6A 2BXDA 1O9XA 4HGKA 2BXEA 5IJ5A 1HK1A 4F5SA 1BKEA 5IFOA 2VDBA
chains in the Genus database with same CATH superfamily
3G9KD 1JNBA 3B9LA 4NAWB 2YDFA 2EFEA 3NVMA 4GDXA 4N0FD 2E0YA 4W4UB 2XW1A 3WHSA 1KXPD 1VZSA 4F5TA 2QM6A 4ZUXV 2DYOA 4C31B 2BX8A 1E7HA 2VDBA 1KW2A 2NQOA 3NMUA 5ID9A 2XSIA 2I2ZA 1LNSA 5HOZA 2LQHA 1LOTA 2EFDA 1MUSA 1H5WA 1MIYA 3SIUB 2LXTA 1TF0A 2DG5A 2BXAA 1UORA 2LXSA 4L8UA 4Z9OA 4MBEC 3FWBC 1FOUA 1HK2A 4GG2A 2BXPA 3V03A 2XVWA 1HK5A 3GA9L 5GIPA 4LUFA 5BPKA 4LUHA 5IIUA 4OTTA 1J78A 2LOQA 5IIXA 4IW1A 4OR0A 3V09A 2ROHA 4S1YA 3LU8A 3JQZA 2BXGA 1E7BA 2LQIA 2XW0A 2BXHA 3A75A 4IW2A 2VUFA 3VQIA 3WHQA 5IJEA 4BY9C 3JRYA 1MA9A 1E7GA 2BXQA 3KJLA 4G04A 3FNMA 1E7CA 4ZBKA 1N5UA 4Z69A 3LU7A 1H9ZA 2BXBA 2Z8IA 3ICXA 1GNJA 4FJCB 1E78A 4L9QA 4ZBQA 3CX9A 1MM8A 3UIVA 4DM0A 2EFCA 3H3AA 3PLAA 5IIHA 1MIVA 2K0NA 1E7IA 4N0UD 4L9KA 3NVIA 3SIVB 2EFHA 2XMOA 1E7FA 2QHBA 4OTUA 5B5TA 2NNWA 1HA2A 2KBZA 1TXUA 5IJFA 3SQJA 2XVVA 2Z8KA 2BXNA 3NVKA 3MHSB 2AGHB 5DBYA 4TQ0A 2DBWA 4ZCGA 5ID7A 1NT2B 3LU6A 2BXFA 2CKXA 3B9MA 4G03A 1J7EA 1HK3A 2XVQA 4OT2A 2QMCA 4ZBRA 2AJEA 1GNIA 3GQUA 2V36A 4PO0A 5GINA 5GIOA 4LB2A 2JUHA 1MUHA 4WA6B 3H37A 2BXKA 2KWFA 4F5VA 3MHHB 1BM0A 2VUEA 5DQFA 1KDXA 4E99A 4F5UA 3TDLA 1E7AA 4FIPB 2BXMA 4M70B 3GQXA 1HK4A 4EMXA 4D7XA 2BXLA 4LB9A 3WHRA 3V08A 4FK5B 2OT3A 3BPJA 1MIWA 4I9OA 1E7EA 4HGMB 4K2CA 3W1SA 2BXCA 3A73A 1BJ5A 1SB0A 4LA0A 5D7GA 2DBUA 2DYMA 3FWCC 5GHKA 4J2VA 2Z8JA 3KIKA 4N3ZA 5IFOA 2GUTA 3M99C 2XVUA 2E0XA 4JK4A 4K71A 2I30A 4GDLB 2BXIA 4ZC6A 4BKEA 5FUOA 2DBXA 4DHXB 1AO6A 2OZBB 2BXDA 4G01A 4TQ1A 3ECPA 1O9XA 4HGKA 2BXEA 5IJ5A 1VFIA 1HK1A 4F5SA 4GDKB 1BKEA 1IJGA 2BXOA
chains in the Genus database with same CATH topology
3G9KD 1JNBA 3B9LA 4NAWB 2YDFA 2EFEA 3NVMA 4GDXA 4N0FD 2E0YA 4W4UB 2XW1A 3WHSA 1KXPD 1VZSA 4F5TA 2QM6A 4ZUXV 2DYOA 4C31B 2BX8A 1E7HA 2VDBA 1KW2A 2NQOA 3NMUA 5ID9A 2XSIA 2I2ZA 1LNSA 5HOZA 1LOTA 2EFDA 1H5WA 1MIYA 3SIUB 1TF0A 2DG5A 2BXAA 1UORA 4L8UA 4Z9OA 4MBEC 3FWBC 1FOUA 1HK2A 4GG2A 2BXPA 3V03A 2XVWA 1HK5A 3GA9L 5GIPA 4LUFA 5BPKA 4LUHA 5IIUA 4OTTA 1J78A 2LOQA 5IIXA 4IW1A 4OR0A 3V09A 2ROHA 4S1YA 3LU8A 3JQZA 2BXGA 1E7BA 2XW0A 3A75A 2BXHA 4IW2A 3VQIA 2VUFA 3WHQA 5IJEA 4BY9C 3JRYA 1MA9A 1E7GA 2BXQA 3KJLA 4G04A 3FNMA 1E7CA 4ZBKA 1N5UA 4Z69A 3LU7A 1H9ZA 2BXBA 2Z8IA 3ICXA 1GNJA 4FJCB 1E78A 4L9QA 4ZBQA 3CX9A 3UIVA 2EFCA 3H3AA 3PLAA 5IIHA 1MIVA 1E7IA 4N0UD 4L9KA 3NVIA 3SIVB 2EFHA 2XMOA 1E7FA 2QHBA 4OTUA 5B5TA 2NNWA 1HA2A 2KBZA 1TXUA 5IJFA 3SQJA 2XVVA 2Z8KA 2BXNA 3NVKA 3MHSB 5DBYA 4TQ0A 2DBWA 4ZCGA 5ID7A 1NT2B 3LU6A 2BXFA 2CKXA 3B9MA 4G03A 1J7EA 1HK3A 2XVQA 4OT2A 2QMCA 4ZBRA 2AJEA 1GNIA 3GQUA 2V36A 4PO0A 5GINA 5GIOA 4LB2A 2JUHA 4WA6B 3H37A 2BXKA 4F5VA 3MHHB 1BM0A 2VUEA 5DQFA 4E99A 4F5UA 3TDLA 1E7AA 4FIPB 2BXMA 4M70B 3GQXA 1HK4A 4EMXA 2BXLA 4LB9A 3WHRA 3V08A 4FK5B 2OT3A 1MIWA 1E7EA 4HGMB 4K2CA 3W1SA 2BXCA 3A73A 1BJ5A 4LA0A 5D7GA 2DBUA 2DYMA 3FWCC 5GHKA 4J2VA 2Z8JA 3KIKA 4N3ZA 5IFOA 3M99C 2XVUA 2E0XA 4JK4A 4K71A 2I30A 4GDLB 2BXIA 4ZC6A 4BKEA 5FUOA 2DBXA 4DHXB 1AO6A 2OZBB 2BXDA 4G01A 4TQ1A 1O9XA 4HGKA 2BXEA 5IJ5A 1VFIA 1HK1A 4F5SA 4GDKB 1BKEA 1IJGA 2BXOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B9L A;  2YDF A;  4N0F D;  2XW1 A;  1KXP D;  4F5T A;  2BX8 A;  1E7H A;  1KW2 A;  5ID9 A;  2XSI A;  2I2Z A;  5HOZ A;  1LOT A;  1TF0 A;  2BXA A;  1UOR A;  4L8U A;  1HK2 A;  2BXP A;  3V03 A;  2XVW A;  1HK5 A;  2BXO A;  4LUF A;  4LUH A;  5IIU A;  1J78 A;  5IIX A;  4IW1 A;  4OR0 A;  3V09 A;  4S1Y A;  3LU8 A;  3JQZ A;  2BXG A;  1E7B A;  2XW0 A;  4IW2 A;  2BXH A;  2VUF A;  5IJE A;  3JRY A;  1MA9 A;  1E7G A;  2BXQ A;  4G04 A;  1E7C A;  1N5U A;  4Z69 A;  3LU7 A;  1H9Z A;  2BXB A;  1GNJ A;  4L9Q A;  1E78 A;  4ZBQ A;  3CX9 A;  3UIV A;  5IIH A;  1E7I A;  4N0U D;  4L9K A;  1E7F A;  1HA2 A;  5IJF A;  3SQJ A;  2XVV A;  2BXN A;  5DBY A;  5ID7 A;  3LU6 A;  2BXF A;  3B9M A;  4G03 A;  4ZBR A;  1J7E A;  1HK3 A;  2XVQ A;  4OT2 A;  1GNI A;  4PO0 A;  4LB2 A;  2BXK A;  4F5V A;  1BM0 A;  2VUE A;  5DQF A;  4E99 A;  4F5U A;  3TDL A;  1E7A A;  2BXM A;  1HK4 A;  4EMX A;  2BXL A;  4LB9 A;  3V08 A;  1E7E A;  4HGM B;  4K2C A;  2BXC A;  3A73 A;  1BJ5 A;  4LA0 A;  5GHK A;  4J2V A;  2XVU A;  4JK4 A;  4K71 A;  2I30 A;  2BXI A;  4BKE A;  5FUO A;  1AO6 A;  2BXD A;  1O9X A;  4HGK A;  2BXE A;  5IJ5 A;  1HK1 A;  4F5S A;  1BKE A;  5IFO A;  2VDB A; 
#chains in the Genus database with same CATH topology
 3G9K D;  1JNB A;  3B9L A;  4NAW B;  2YDF A;  2EFE A;  3NVM A;  4GDX A;  4N0F D;  2E0Y A;  4W4U B;  2XW1 A;  3WHS A;  1KXP D;  1VZS A;  4F5T A;  2QM6 A;  4ZUX V;  2DYO A;  4C31 B;  2BX8 A;  1E7H A;  2VDB A;  1KW2 A;  2NQO A;  3NMU A;  5ID9 A;  2XSI A;  2I2Z A;  1LNS A;  5HOZ A;  2LQH A;  1LOT A;  2EFD A;  1MUS A;  1H5W A;  1MIY A;  3SIU B;  2LXT A;  1TF0 A;  2DG5 A;  2BXA A;  1UOR A;  2LXS A;  4L8U A;  4Z9O A;  4MBE C;  3FWB C;  1FOU A;  1HK2 A;  4GG2 A;  2BXP A;  3V03 A;  2XVW A;  1HK5 A;  3GA9 L;  5GIP A;  4LUF A;  5BPK A;  4LUH A;  5IIU A;  4OTT A;  1J78 A;  2LOQ A;  5IIX A;  4IW1 A;  4OR0 A;  3V09 A;  2ROH A;  4S1Y A;  3LU8 A;  3JQZ A;  2BXG A;  1E7B A;  2LQI A;  2XW0 A;  2BXH A;  3A75 A;  4IW2 A;  2VUF A;  3VQI A;  3WHQ A;  5IJE A;  4BY9 C;  3JRY A;  1MA9 A;  1E7G A;  2BXQ A;  3KJL A;  4G04 A;  3FNM A;  1E7C A;  4ZBK A;  1N5U A;  4Z69 A;  3LU7 A;  1H9Z A;  2BXB A;  2Z8I A;  3ICX A;  1GNJ A;  4FJC B;  1E78 A;  4L9Q A;  4ZBQ A;  3CX9 A;  1MM8 A;  3UIV A;  4DM0 A;  2EFC A;  3H3A A;  3PLA A;  5IIH A;  1MIV A;  2K0N A;  1E7I A;  4N0U D;  4L9K A;  3NVI A;  3SIV B;  2EFH A;  2XMO A;  1E7F A;  2QHB A;  4OTU A;  5B5T A;  2NNW A;  1HA2 A;  2KBZ A;  1TXU A;  5IJF A;  3SQJ A;  2XVV A;  2Z8K A;  2BXN A;  3NVK A;  3MHS B;  2AGH B;  5DBY A;  4TQ0 A;  2DBW A;  4ZCG A;  5ID7 A;  1NT2 B;  3LU6 A;  2BXF A;  2CKX A;  3B9M A;  4G03 A;  1J7E A;  1HK3 A;  2XVQ A;  4OT2 A;  2QMC A;  4ZBR A;  2AJE A;  1GNI A;  3GQU A;  2V36 A;  4PO0 A;  5GIN A;  5GIO A;  4LB2 A;  2JUH A;  1MUH A;  4WA6 B;  3H37 A;  2BXK A;  2KWF A;  4F5V A;  3MHH B;  1BM0 A;  2VUE A;  5DQF A;  1KDX A;  4E99 A;  4F5U A;  3TDL A;  1E7A A;  4FIP B;  2BXM A;  4M70 B;  3GQX A;  1HK4 A;  4EMX A;  4D7X A;  2BXL A;  4LB9 A;  3WHR A;  3V08 A;  4FK5 B;  2OT3 A;  3BPJ A;  1MIW A;  4I9O A;  1E7E A;  4HGM B;  4K2C A;  3W1S A;  2BXC A;  3A73 A;  1BJ5 A;  1SB0 A;  4LA0 A;  5D7G A;  2DBU A;  2DYM A;  3FWC C;  5GHK A;  4J2V A;  2Z8J A;  3KIK A;  4N3Z A;  5IFO A;  2GUT A;  3M99 C;  2XVU A;  2E0X A;  4JK4 A;  4K71 A;  2I30 A;  4GDL B;  2BXI A;  4ZC6 A;  4BKE A;  5FUO A;  2DBX A;  4DHX B;  1AO6 A;  2OZB B;  2BXD A;  4G01 A;  4TQ1 A;  3ECP A;  1O9X A;  4HGK A;  2BXE A;  5IJ5 A;  1VFI A;  1HK1 A;  4F5S A;  4GDK B;  1BKE A;  1IJG A;  2BXO A; 
#chains in the Genus database with same CATH homology
 3G9K D;  1JNB A;  3B9L A;  4NAW B;  2YDF A;  2EFE A;  3NVM A;  4GDX A;  4N0F D;  2E0Y A;  4W4U B;  2XW1 A;  3WHS A;  1KXP D;  1VZS A;  4F5T A;  2QM6 A;  4ZUX V;  2DYO A;  4C31 B;  2BX8 A;  1E7H A;  2VDB A;  1KW2 A;  2NQO A;  3NMU A;  5ID9 A;  2XSI A;  2I2Z A;  1LNS A;  5HOZ A;  1LOT A;  2EFD A;  1H5W A;  1MIY A;  3SIU B;  1TF0 A;  2DG5 A;  2BXA A;  1UOR A;  4L8U A;  4Z9O A;  4MBE C;  3FWB C;  1FOU A;  1HK2 A;  4GG2 A;  2BXP A;  3V03 A;  2XVW A;  1HK5 A;  3GA9 L;  5GIP A;  4LUF A;  5BPK A;  4LUH A;  5IIU A;  4OTT A;  1J78 A;  2LOQ A;  5IIX A;  4IW1 A;  4OR0 A;  3V09 A;  2ROH A;  4S1Y A;  3LU8 A;  3JQZ A;  2BXG A;  1E7B A;  2XW0 A;  3A75 A;  2BXH A;  4IW2 A;  3VQI A;  2VUF A;  3WHQ A;  5IJE A;  4BY9 C;  3JRY A;  1MA9 A;  1E7G A;  2BXQ A;  3KJL A;  4G04 A;  3FNM A;  1E7C A;  4ZBK A;  1N5U A;  4Z69 A;  3LU7 A;  1H9Z A;  2BXB A;  2Z8I A;  3ICX A;  1GNJ A;  4FJC B;  1E78 A;  4L9Q A;  4ZBQ A;  3CX9 A;  3UIV A;  2EFC A;  3H3A A;  3PLA A;  5IIH A;  1MIV A;  1E7I A;  4N0U D;  4L9K A;  3NVI A;  3SIV B;  2EFH A;  2XMO A;  1E7F A;  2QHB A;  4OTU A;  5B5T A;  2NNW A;  1HA2 A;  2KBZ A;  1TXU A;  5IJF A;  3SQJ A;  2XVV A;  2Z8K A;  2BXN A;  3NVK A;  3MHS B;  5DBY A;  4TQ0 A;  2DBW A;  4ZCG A;  5ID7 A;  1NT2 B;  3LU6 A;  2BXF A;  2CKX A;  3B9M A;  4G03 A;  1J7E A;  1HK3 A;  2XVQ A;  4OT2 A;  2QMC A;  4ZBR A;  2AJE A;  1GNI A;  3GQU A;  2V36 A;  4PO0 A;  5GIN A;  5GIO A;  4LB2 A;  2JUH A;  4WA6 B;  3H37 A;  2BXK A;  4F5V A;  3MHH B;  1BM0 A;  2VUE A;  5DQF A;  4E99 A;  4F5U A;  3TDL A;  1E7A A;  4FIP B;  2BXM A;  4M70 B;  3GQX A;  1HK4 A;  4EMX A;  2BXL A;  4LB9 A;  3WHR A;  3V08 A;  4FK5 B;  2OT3 A;  1MIW A;  1E7E A;  4HGM B;  4K2C A;  3W1S A;  2BXC A;  3A73 A;  1BJ5 A;  4LA0 A;  5D7G A;  2DBU A;  2DYM A;  3FWC C;  5GHK A;  4J2V A;  2Z8J A;  3KIK A;  4N3Z A;  5IFO A;  3M99 C;  2XVU A;  2E0X A;  4JK4 A;  4K71 A;  2I30 A;  4GDL B;  2BXI A;  4ZC6 A;  4BKE A;  5FUO A;  2DBX A;  4DHX B;  1AO6 A;  2OZB B;  2BXD A;  4G01 A;  4TQ1 A;  1O9X A;  4HGK A;  2BXE A;  5IJ5 A;  1VFI A;  1HK1 A;  4F5S A;  4GDK B;  1BKE A;  1IJG A;  2BXO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...