1LRWA

Crystal structure of methanol dehydrogenase from p. denitrificans
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
600
structure length
600
Chain Sequence
NDQLVELAKDPANWVMTGRDYNAQNYSEMTDINKENVKQLRPAWSFSTGVLHGHEGTPLVVGDRMFIHTPFPNTTFALDLNEPGKILWQNKPKQNPTARTVACCDVVNRGLAYWPGDDQVKPLIFRTQLDGHIVAMDAETGETRWIMENSDIKVGSTLTIAPYVIKDLVLVGSSGAELGVRGYVTAYDVKSGEMRWRAFATGPDEELLLAEDFNAPNPHYGQKNLGLETWEGDAWKIGGGTNWGWYAYDPEVDLFYYGSGNPAPWNETMRPGDNKWTMAIWGREATTGEAKFAYQKTPHDEWDYAGVNVMMLSEQEDKQGQMRKLLTHPDRNGIVYTLDRTNGDLISADKMDDTVNWVKEVQLDTGLPVRDPEFGTRMDHKARDICPSAMGYHNQGHDSYDPERKVFMLGINHICMDWEPFMLPYRAGQFFVGATLTMYPGPKGDRGNASGLGQIKAYDAISGEMKWEKMERFSVWGGTMATAGGLTFYATLDGFIKARDSDTGDLLWKFKLPSGVIGHPMTYKHDGRQYVAIMYGVGGWPGVGLVFDLADPTAGLGSVGAFKRLQEFTQMGGGVMVFSLDGESPYSDPNVGEYAPGEPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords methanol dehydrogenase subunit 1
publication title X-ray structure of methanol dehydrogenase from Paracoccus denitrificans and molecular modeling of its interactions with cytochrome c-551i
pubmed doi rcsb
total genus 168
structure length 600
sequence length 600
chains with identical sequence C
ec nomenclature ec 1.1.2.7: Methanol dehydrogenase (cytochrome c).
pdb deposition date 2002-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01011 PQQ PQQ enzyme repeat
A PF13360 PQQ_2 PQQ-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.140.10.10 Mainly Beta 8 Propeller Methanol Dehydrogenase; Chain A Quinoprotein alcohol dehydrogenase-like superfamily 1lrwA00
1H4IA 2AD8A 4MAEA 1KB0A 4TQOA 1LRWA 1YIQA 1KV9A 4CVCA 2AD7A 1G72A 1FLGA 2D0VA 1H4JA 1W6SA 2AD6A 4CVBA 4AAHA 4MH1A
chains in the Genus database with same CATH superfamily
1H4IA 3BJMA 2AD8A 3SWWA 4FFVA 3HABA 3C43A 3KWJA 1E2RA 2AJ8A 2GBFA 3D4LA 3VJLA 1AOMA 1YIQA 3OC0A 1RWQA 1Z68A 2G5TA 2IITA 3WQHA 2OAEA 1DY7A 4KR0A 1XFDA 1R9NA 3KWFA 3Q0TA 2BGRA 4CVBA 4FFWA 3SX4A 1H9XA 2OLEA 4MH1A 1N15A 1H9YA 2I03A 4MAEA 4TQOA 4G1FA 4J3JA 2AJDA 3CCBA 5LLSA 2JIDA 3C45A 3CCCA 1WCYA 3OPMA 3G0CA 3W2TA 2D0VA 2Z3WA 1H4JA 1N90A 5T4BA 2OGZA 2QT9A 1HJ5A 2ECFA 2RGUA 2DCMA 1N50A 2AD6A 2P8SA 1TKRA 4N8EA 4PV7A 2GBGA 2IIVA 1W1IA 4QZVA 5KBYA 1GJQA 1NU6A 1AOQA 1X70A 1GQ1A 4JH0A 1KB0A 2G63A 2G5PA 3Q8WA 2BUAA 1ORVA 2HHAA 1LRWA 5T4FA 1AOFA 1KV9A 4WJLA 4DTCA 2QJRA 2AJLI 1G72A 2ONCA 1FLGA 3HACA 4LKOA 5T4EA 1HJ4A 1TK3A 2GBCA 1ORWA 3O9VA 4PNZA 5T4HA 3G0DA 2BUBA 2BUCA 1W6SA 3F8SA 2FJPA 3H0CA 2OQVA 2EEPA 4AAHA 1HZUA 4DSAA 1R9MA 2D5LA 3G0BA 1N1MA 2QTBA 2AJBA 5ISMA 3QBJA 2Z3ZA 1J2EA 2RIPA 3G0GA 2OQIA 1NIRA 3VJMA 4CVCA 4A5SA 2AD7A 1QKSA 3NOXA 5J3JA 2I3ZA 2QKYA 2I78A 1HJ3A 2BGNA 5I7UA 2QOEA 2OPHA 1NU8A 4DSZA 4L72A 1BL9A 4Q1VA 2OAGA 2AJCA 1HCMA 3O95A 1PFQA 1HZVA 1U8EA 2GBIA 3EIOA 4N8DA 3VJKA 1NNOA
chains in the Genus database with same CATH topology
1H4IA 2AD8A 4MAEA 1KB0A 4TQOA 1LRWA 1YIQA 1KV9A 4CVCA 2AD7A 1G72A 1FLGA 2D0VA 1H4JA 1W6SA 2AD6A 4CVBA 4AAHA 4MH1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H4I A;  2AD8 A;  4MAE A;  1KB0 A;  4TQO A;  1LRW A;  1YIQ A;  1KV9 A;  4CVC A;  2AD7 A;  1G72 A;  1FLG A;  2D0V A;  1H4J A;  1W6S A;  2AD6 A;  4CVB A;  4AAH A;  4MH1 A; 
#chains in the Genus database with same CATH topology
 1H4I A;  3BJM A;  2AD8 A;  3SWW A;  4FFV A;  3HAB A;  3C43 A;  3KWJ A;  1E2R A;  2AJ8 A;  2GBF A;  3D4L A;  3VJL A;  1AOM A;  1YIQ A;  3OC0 A;  1RWQ A;  1Z68 A;  2G5T A;  2IIT A;  3WQH A;  2OAE A;  1DY7 A;  4KR0 A;  1XFD A;  1R9N A;  3KWF A;  3Q0T A;  2BGR A;  4CVB A;  4FFW A;  3SX4 A;  1H9X A;  2OLE A;  4MH1 A;  1N15 A;  1H9Y A;  2I03 A;  4MAE A;  4TQO A;  4G1F A;  4J3J A;  2AJD A;  3CCB A;  5LLS A;  2JID A;  3C45 A;  3CCC A;  1WCY A;  3OPM A;  3G0C A;  3W2T A;  2D0V A;  2Z3W A;  1H4J A;  1N90 A;  5T4B A;  2OGZ A;  2QT9 A;  1HJ5 A;  2ECF A;  2RGU A;  2DCM A;  1N50 A;  2AD6 A;  2P8S A;  1TKR A;  4N8E A;  4PV7 A;  2GBG A;  2IIV A;  1W1I A;  4QZV A;  5KBY A;  1GJQ A;  1NU6 A;  1AOQ A;  1X70 A;  1GQ1 A;  4JH0 A;  1KB0 A;  2G63 A;  2G5P A;  3Q8W A;  2BUA A;  1ORV A;  2HHA A;  1LRW A;  5T4F A;  1AOF A;  1KV9 A;  4WJL A;  4DTC A;  2QJR A;  2AJL I;  1G72 A;  2ONC A;  1FLG A;  3HAC A;  4LKO A;  5T4E A;  1HJ4 A;  1TK3 A;  2GBC A;  1ORW A;  3O9V A;  4PNZ A;  5T4H A;  3G0D A;  2BUB A;  2BUC A;  1W6S A;  3F8S A;  2FJP A;  3H0C A;  2OQV A;  2EEP A;  4AAH A;  1HZU A;  4DSA A;  1R9M A;  2D5L A;  3G0B A;  1N1M A;  2QTB A;  2AJB A;  5ISM A;  3QBJ A;  2Z3Z A;  1J2E A;  2RIP A;  3G0G A;  2OQI A;  1NIR A;  3VJM A;  4CVC A;  4A5S A;  2AD7 A;  1QKS A;  3NOX A;  5J3J A;  2I3Z A;  2QKY A;  2I78 A;  1HJ3 A;  2BGN A;  5I7U A;  2QOE A;  2OPH A;  1NU8 A;  4DSZ A;  4L72 A;  1BL9 A;  4Q1V A;  2OAG A;  2AJC A;  1HCM A;  3O95 A;  1PFQ A;  1HZV A;  1U8E A;  2GBI A;  3EIO A;  4N8D A;  3VJK A;  1NNO A; 
#chains in the Genus database with same CATH homology
 1H4I A;  2AD8 A;  4MAE A;  1KB0 A;  4TQO A;  1LRW A;  1YIQ A;  1KV9 A;  4CVC A;  2AD7 A;  1G72 A;  1FLG A;  2D0V A;  1H4J A;  1W6S A;  2AD6 A;  4CVB A;  4AAH A;  4MH1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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