1LSHA

Lipid-protein interactions in lipovitellin
Total Genus 316
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
316
sequence length
1056
structure length
955
Chain Sequence
EFQPGKVYRYSYDAFSISGLPEPGVNRAGLSGEMKIEIHGHTHNQATLKITQVNLKYFLGPWPSDSFYPLTGGYDHFIQQLEVPVRFDYSAGRIGDIYAPPQVTDTAVNIVRGILNLFQLSLKKNQQTFELQETGVEGICQTTYVVQEGYRTNEMAVVKTKDLNNCDHKVYKTMGTAYAERCPTCQKMNKNLRSTAVYNYAIFDEPSGYIIKSAHSEEIQQLSVFDIKEGNVVIESRQKLILEGIQSAPAASQAASLQNRGGLMYKFPSSAITKMSSLFVTKGKNLESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAACSVAIKMLGSKLDRLGCRYSKAVHVDTFNARTMAGVSADYFRINSPSGPLPRAVAAKIRGQGMGYASDIVEFGLRAEGLQELLYDWKSVPEERPLASGYVKVHGQEVVFAELDKKMQEQIGAVVSKLEQGMDVLLTKGYVVSEVRYMQPVCIGIPMDLNLLVSGVTTNRANLSASFSSLPADMKLADLLATNIELRVAATTSMSQHAVAIMGLTTDLAKAGMQTHYKTSAGLGVNGKIEMNARESNFKASLKPFQQKTVVVLSTMESIVFVRDPSGSRILPVLPPKMTQKQIHDIMTARPVMRRKQSCSKSAALSSKVCFSARLRNAAFIRNALLYKITGDYVSKVYVQPTSSKAQITKVELELQAG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Lipid-protein interactions in lipovitellin.
pubmed doi rcsb
molecule tags Lipid binding protein
molecule keywords LIPOVITELLIN (LV-1N, LV-1C)
total genus 316
structure length 955
sequence length 1056
ec nomenclature
pdb deposition date 2002-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01347 Vitellogenin_N Lipoprotein amino terminal region
A PF09172 DUF1943 Domain of unknown function (DUF1943)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.25.10.20 Mainly Alpha Alpha Horseshoe Leucine-rich Repeat Variant Vitellinogen, superhelical 1lshA02
2.20.50.20 Mainly Beta Single Sheet Outer Surface Protein A; domain 2 Lipovitellin. Chain A, domain 3 1lshA03
2.20.80.10 Mainly Beta Single Sheet Lipovitellin-phosvitin complex, chain A, domain 4 Lipovitellin-phosvitin complex, chain A, domain 4 1lshA04
2.30.230.10 Mainly Beta Roll Lipovitellin-phosvitin complex; beta-sheet shell regions Lipovitellin; beta-sheet shell regions, chain A 1lshA01
1LSHA
chains in the Genus database with same CATH superfamily
5CLEA 3BVSA 3Q0RA 2BCTA 4L7MA 1TH1A 1UKLA 2PKGA 3OUWA 4FQ3A 4P6ZG 2X19B 4MZ5E 1GCJA 4EVAA 3V6YA 4HTVA 3QMLC 4K92A 4CB8A 1G3JA 4B8JA 4TNMA 3O2SA 5HUWC 4EV8A 3L3QA 3VLDA 3BX2A 3V71A 2IAEA 4H3HA 1IB2A 3AU3A 1BK6A 1U6GC 1XM9A 3GVTA 2JDQA 2XA7B 3UJ4A 4I3NA 4BPLA 3VWAA 4ZDUA 1JPWA 1LRVA 5H2WA 1M8WA 4B18A 3ZIQA 4B8PA 5AEIA 5KUBA 2NPPB 3C5WA 3GNIA 5CTTA 5HHGE 3WOZA 2QK2A 1UPKA 3QHEA 3PSTA 4U5UA 3NMXA 5CLBA 1BK5A 5CL8A 3RZ9A 4E4VA 3JXYA 2JKTB 2IE3A 3OPBA 3O2TA 5D5KC 3QGBA 2NYLB 5CLDA 4MZ6E 3K5QA 2Z5MA 5H2XA 3A6PA 1IALA 3GS3A 3ZINA 1QGRA 1UN0A 1N4KA 3ZIPA 3ZHPA 4EVPA 4QMJA 4FZAA 4I6IA 2VGLB 4DJSA 1XQRA 3FEXC 3BTRC 4U5SA 5EKFA 3FGAA 4DB9A 4H3KA 4CRVB 3Q5UA 1T08A 3K7VA 2NYMB 3TPMA 3UJ0A 4I5NA 3RZXA 4I8MA 4I37A 3JY1A 5CL4A 4YJEA 2JKRB 5LSWA 3GAEA 4PLSA 4U5OA 4U54A 4HNMA 3C2HA 5CL7A 2IX3A 4UQIB 4QMHA 4MFVA 4L4HA 1QBKB 3IFQA 3GVOA 4LACA 3SL9A 1W9CA 1EE5A 3NMZA 4CB9A 1HO8A 3QGCA 3OUXA 4YK6A 1QZ7A 3ZKVA 3Q0PA 3VLFA 4ADYA 3K64A 4RV1A 1IBRB 3VLEA 5SWFA 5KLRB 4DB8A 5CL3A 4B8OA 4R0ZA 4V3OA 2VGLA 1WA5B 4UADA 2WTKA 4BA3A 5SVZA 1IQ1C 3ODSA 4V3QA 3JX7A 4FFBC 4I1EA 2BAPA 3O2QA 4WV6A 5JJAA 3LWWA 3L6XA 1Z2CB 2JKRA 5E6QB 1LUJA 3Q0QA 4Y5JA 5BZUA 4UQIA 3L3FX 3TJZB 2Z5KA 4HXTA 4YJLA 2Z6HA 4QMIA 4JLQA 3L6YA 3K7WA 1M1EA 3TX7A 1XQSA 3DADA 3LTMA 4G3AA 3FEYC 3IBVA 1B3UA 3UKWB 3Q0MA 4P6ZB 1PJMB 4A3VA 4U5LA 5EKGA 5KL1A 2RU4B 3TT9A 3ND2A 1JDHA 4XZRB 2PF4A 4BQKA 4JW2B 5K6SA 3Q0NA 1F59A 3UL0B 3ZILA 3Q0OA 5BZ5A 2XA7A 2OT8A 2IWHA 1EJLI 2GL7A 4O27A 5CL9A 2QK1A 5BYMA 4RXHB 4EVTA 4CT7B 3OQSA 4PVZA 4I5LA 2NPPA 3UVUA 4I2WA 5EWPA 4U58A 4I96A 1TE4A 4U5VA 4FZDA 2C1TA 4R10A 4HM9A 4NZWA 2QMRA 1M8XA 4I0YA 1O6PA 1LSHB 4CT6B 3EA5B 2BNXA 1EE4A 2JKTA 1QGKA 4UAEA 3DW8A 3K5YA 3LTJA 1M8YA 3K5ZA 2NYLA 3WYFC 1EJYI 3JXZA 3T7UA 4MFUA 2X1GF 3BWTA 4FDDA 5KL8A 3UL1B 3KNDA 3TJ3A 3WPTA 2JAKA 4IMIA 4YGXA 2C1MA 2QNAA 4U3JC 1PJNB 1UPLA 3EG5B 5BZVA 4U2XD 2FV2A 4A3TA 5CLCA 4GMOA 4D49A 3BX3A 3ZIKA 1V18A 2IE4A 2OF3A 2XOAA 2NYMA 3W3UA 4A0CA 3NMWA 4CV5B 4I7IA 3T8SA 3GQ2A 3UKYB 4DBAA 2YNRA 4R11A 3UKZB 2IW3A 2BKUB 4UWXA 1LSHA 5HUYC 1OYZA 4CRUB 5CL6A 3C2GA 4D4EA 2DB0A 4IMJA 2F31A 5CLAA 1Q1SC 1M8ZA 2Z5OA 2Z5JA 5DN7A 1JPPA 5FC8E 3PSPA 3Q0SA 3FGAB 3EBBA 1M5NS 5KLTB 2YJYA 4RZPA 2Q5DA 5KLAA 3Q0LA 3K49A 4EV9A 1W63B 4I2SA 4CBAA 4OO6A 3BCTA 4DB6A 5BZ1A 2YNSA 4PLRA 4DZSA 1I7XA 3BSBA 2W3CA 3H3DX 3TPOA 4V3RA 2H4MA 2P8QA 3BSXA 5SW9A 4JKQA 3V74A 3GB8A 4FZFA 2Z5NA 5J3VA 3K4EA 3K62A 4KZGA 4NEEA 1WA5C 3WOYA 3QG9A 4YI0C 4DVGB 3ODRA 4K6JA 3UKXB 4UAFB 4PLQA 2IAEB 4U5NA 2RU4A 4GMNA 3ZIOA 4JW3C 3NOWA 5B56A 4JW2A 1W63A 3OBVA 2Z6GA 4L4IA 3VE6A 1Y2AC 3K61A 1O6OA 3GRLA 4OIHA 4FP7A 5CL5A 1Q1TC 3SLAA 5K9SA 3ZIRA 3O4XA 4I2ZA 1I7WA
chains in the Genus database with same CATH topology
1LSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LSH A; 
#chains in the Genus database with same CATH topology
 5CLE A;  3BVS A;  3Q0R A;  2BCT A;  4L7M A;  1TH1 A;  1UKL A;  2PKG A;  3OUW A;  4FQ3 A;  4P6Z G;  2X19 B;  4MZ5 E;  1GCJ A;  4EVA A;  3V6Y A;  4HTV A;  3QML C;  4K92 A;  4CB8 A;  1G3J A;  4B8J A;  4TNM A;  3O2S A;  5HUW C;  4EV8 A;  3L3Q A;  3VLD A;  3BX2 A;  3V71 A;  2IAE A;  4H3H A;  1IB2 A;  3AU3 A;  1BK6 A;  1U6G C;  1XM9 A;  3GVT A;  2JDQ A;  2XA7 B;  3UJ4 A;  4I3N A;  4BPL A;  3VWA A;  4ZDU A;  1JPW A;  1LRV A;  5H2W A;  1M8W A;  4B18 A;  3ZIQ A;  4B8P A;  5AEI A;  5KUB A;  2NPP B;  3C5W A;  3GNI A;  5CTT A;  5HHG E;  3WOZ A;  2QK2 A;  1UPK A;  3QHE A;  3PST A;  4U5U A;  3NMX A;  5CLB A;  1BK5 A;  5CL8 A;  3RZ9 A;  4E4V A;  3JXY A;  2JKT B;  2IE3 A;  3OPB A;  3O2T A;  5D5K C;  3QGB A;  2NYL B;  5CLD A;  4MZ6 E;  3K5Q A;  2Z5M A;  5H2X A;  3A6P A;  1IAL A;  3GS3 A;  3ZIN A;  1QGR A;  1UN0 A;  1N4K A;  3ZIP A;  3ZHP A;  4EVP A;  4QMJ A;  4FZA A;  4I6I A;  2VGL B;  4DJS A;  1XQR A;  3FEX C;  3BTR C;  4U5S A;  5EKF A;  3FGA A;  4DB9 A;  4H3K A;  4CRV B;  3Q5U A;  1T08 A;  3K7V A;  2NYM B;  3TPM A;  3UJ0 A;  4I5N A;  3RZX A;  4I8M A;  4I37 A;  3JY1 A;  5CL4 A;  4YJE A;  2JKR B;  5LSW A;  3GAE A;  4PLS A;  4U5O A;  4U54 A;  4HNM A;  3C2H A;  5CL7 A;  2IX3 A;  4UQI B;  4QMH A;  4MFV A;  4L4H A;  1QBK B;  3IFQ A;  3GVO A;  4LAC A;  3SL9 A;  1W9C A;  1EE5 A;  3NMZ A;  4CB9 A;  1HO8 A;  3QGC A;  3OUX A;  4YK6 A;  1QZ7 A;  3ZKV A;  3Q0P A;  3VLF A;  4ADY A;  3K64 A;  4RV1 A;  1IBR B;  3VLE A;  5SWF A;  5KLR B;  4DB8 A;  5CL3 A;  4B8O A;  4R0Z A;  4V3O A;  2VGL A;  1WA5 B;  4UAD A;  2WTK A;  4BA3 A;  5SVZ A;  1IQ1 C;  3ODS A;  4V3Q A;  3JX7 A;  4FFB C;  4I1E A;  2BAP A;  3O2Q A;  4WV6 A;  5JJA A;  3LWW A;  3L6X A;  1Z2C B;  2JKR A;  5E6Q B;  1LUJ A;  3Q0Q A;  4Y5J A;  5BZU A;  4UQI A;  3L3F X;  3TJZ B;  2Z5K A;  4HXT A;  4YJL A;  2Z6H A;  4QMI A;  4JLQ A;  3L6Y A;  3K7W A;  1M1E A;  3TX7 A;  1XQS A;  3DAD A;  3LTM A;  4G3A A;  3FEY C;  3IBV A;  1B3U A;  3UKW B;  3Q0M A;  4P6Z B;  1PJM B;  4A3V A;  4U5L A;  5EKG A;  5KL1 A;  2RU4 B;  3TT9 A;  3ND2 A;  1JDH A;  4XZR B;  2PF4 A;  4BQK A;  4JW2 B;  5K6S A;  3Q0N A;  1F59 A;  3UL0 B;  3ZIL A;  3Q0O A;  5BZ5 A;  2XA7 A;  2OT8 A;  2IWH A;  1EJL I;  2GL7 A;  4O27 A;  5CL9 A;  2QK1 A;  5BYM A;  4RXH B;  4EVT A;  4CT7 B;  3OQS A;  4PVZ A;  4I5L A;  2NPP A;  3UVU A;  4I2W A;  5EWP A;  4U58 A;  4I96 A;  1TE4 A;  4U5V A;  4FZD A;  2C1T A;  4R10 A;  4HM9 A;  4NZW A;  2QMR A;  1M8X A;  4I0Y A;  1O6P A;  1LSH B;  4CT6 B;  3EA5 B;  2BNX A;  1EE4 A;  2JKT A;  1QGK A;  4UAE A;  3DW8 A;  3K5Y A;  3LTJ A;  1M8Y A;  3K5Z A;  2NYL A;  3WYF C;  1EJY I;  3JXZ A;  3T7U A;  4MFU A;  2X1G F;  3BWT A;  4FDD A;  5KL8 A;  3UL1 B;  3KND A;  3TJ3 A;  3WPT A;  2JAK A;  4IMI A;  4YGX A;  2C1M A;  2QNA A;  4U3J C;  1PJN B;  1UPL A;  3EG5 B;  5BZV A;  4U2X D;  2FV2 A;  4A3T A;  5CLC A;  4GMO A;  4D49 A;  3BX3 A;  3ZIK A;  1V18 A;  2IE4 A;  2OF3 A;  2XOA A;  2NYM A;  3W3U A;  4A0C A;  3NMW A;  4CV5 B;  4I7I A;  3T8S A;  3GQ2 A;  3UKY B;  4DBA A;  2YNR A;  4R11 A;  3UKZ B;  2IW3 A;  2BKU B;  4UWX A;  1LSH A;  5HUY C;  1OYZ A;  4CRU B;  5CL6 A;  3C2G A;  4D4E A;  2DB0 A;  4IMJ A;  2F31 A;  5CLA A;  1Q1S C;  1M8Z A;  2Z5O A;  2Z5J A;  5DN7 A;  1JPP A;  5FC8 E;  3PSP A;  3Q0S A;  3FGA B;  3EBB A;  1M5N S;  5KLT B;  2YJY A;  4RZP A;  2Q5D A;  5KLA A;  3Q0L A;  3K49 A;  4EV9 A;  1W63 B;  4I2S A;  4CBA A;  4OO6 A;  3BCT A;  4DB6 A;  5BZ1 A;  2YNS A;  4PLR A;  4DZS A;  1I7X A;  3BSB A;  2W3C A;  3H3D X;  3TPO A;  4V3R A;  2H4M A;  2P8Q A;  3BSX A;  5SW9 A;  4JKQ A;  3V74 A;  3GB8 A;  4FZF A;  2Z5N A;  5J3V A;  3K4E A;  3K62 A;  4KZG A;  4NEE A;  1WA5 C;  3WOY A;  3QG9 A;  4YI0 C;  4DVG B;  3ODR A;  4K6J A;  3UKX B;  4UAF B;  4PLQ A;  2IAE B;  4U5N A;  2RU4 A;  4GMN A;  3ZIO A;  4JW3 C;  3NOW A;  5B56 A;  4JW2 A;  1W63 A;  3OBV A;  2Z6G A;  4L4I A;  3VE6 A;  1Y2A C;  3K61 A;  1O6O A;  3GRL A;  4OIH A;  4FP7 A;  5CL5 A;  1Q1T C;  3SLA A;  5K9S A;  3ZIR A;  3O4X A;  4I2Z A;  1I7W A; 
#chains in the Genus database with same CATH homology
 1LSH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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