1LSLA

Crystal structure of the thrombospondin-1 type 1 repeats
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
113
structure length
113
Chain Sequence
QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell adhesion
molecule keywords Thrombospondin 1
publication title Crystal structure of the TSP-1 type 1 repeats: a novel layered fold and its biological implication.
pubmed doi rcsb
source organism Homo sapiens
total genus 13
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2002-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00090 TSP_1 Thrombospondin type 1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.100.10 Mainly Beta Single Sheet TSP-1 type 1 repeat Thrombospondin type-1 (TSP1) repeat 1lslA02
2.20.100.10 Mainly Beta Single Sheet TSP-1 type 1 repeat Thrombospondin type-1 (TSP1) repeat 1lslA01
3VDJA 1LSLA 1VEXA 3VDLA 1SZLA 4HQNA 3VDKA 4HQLA 3T5OA 4A5WB 3R6BA 4HQOA
chains in the Genus database with same CATH superfamily
3VDJA 1LSLA 1VEXA 3VDLA 1SZLA 4HQNA 3VDKA 4HQLA 3T5OA 4A5WB 3R6BA 4HQOA
chains in the Genus database with same CATH topology
3VDJA 1LSLA 1VEXA 3VDLA 1SZLA 4HQNA 3VDKA 4HQLA 3T5OA 4A5WB 3R6BA 4HQOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VDJ A;  1LSL A;  1VEX A;  3VDL A;  1SZL A;  4HQN A;  3VDK A;  4HQL A;  3T5O A;  4A5W B;  3R6B A;  4HQO A; 
#chains in the Genus database with same CATH topology
 3VDJ A;  1LSL A;  1VEX A;  3VDL A;  1SZL A;  4HQN A;  3VDK A;  4HQL A;  3T5O A;  4A5W B;  3R6B A;  4HQO A; 
#chains in the Genus database with same CATH homology
 3VDJ A;  1LSL A;  1VEX A;  3VDL A;  1SZL A;  4HQN A;  3VDK A;  4HQL A;  3T5O A;  4A5W B;  3R6B A;  4HQO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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