1LW1A

Crystal structure of mycobacterium tuberculosis alkylperoxidase ahpd h137f mutant
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
175
structure length
175
Chain Sequence
IEKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSHCLVAFEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALSPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ALKYLHYDROPEROXIDASE D
publication title The Mechanism of Mycobacterium tuberculosis Alkylhydroperoxidase AhpD as Defined by Mutagenesis, Crystallography, and Kinetics
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Oxidoreductase
total genus 66
structure length 175
sequence length 175
chains with identical sequence B, C
ec nomenclature ec 1.11.1.15: Peroxiredoxin.
pdb deposition date 2002-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1lw1A00
2PRRA 2IJCA 1P8CA 2QEUA 3LVYA 3C1LA 1LW1A 3BEYA 2OUWA 4G9QA 2PFXA 1ME5A 2OYOA 3D7IA 1VKEA 2AF7A 2CWQA 2O4DA 1KNCA 2GMYA 5DIPA 1GU9A 5DIKA 2Q0TA
chains in the Genus database with same CATH superfamily
3AAEA 2PRRA 2IJCA 1P8CA 4AKRA 2QEUA 3LVYA 2KXPA 3C1LA 1LW1A 3LK3A 3BEYA 2OUWA 4G9QA 2PFXA 3AA6A 3LK41 1ME5A 5AFUK 5ADXK 2OYOA 3D7IA 2ES9A 2KZ7A 3AA1A 1VKEA 1IZNA 2AF7A 2CWQA 2O4DA 3AA0A 1KNCA 2GMYA 3AAAA 5DIPA 1GU9A 3LK2A 2JN8A 5DIKA 3AA7A 2Q0TA
chains in the Genus database with same CATH topology
3AAEA 2PRRA 2IJCA 1P8CA 4AKRA 2QEUA 3LVYA 2KXPA 3C1LA 1LW1A 3LK3A 3BEYA 2OUWA 4G9QA 2PFXA 3AA6A 3LK41 1ME5A 5AFUK 5ADXK 2OYOA 3D7IA 2ES9A 2KZ7A 3AA1A 1VKEA 1IZNA 2AF7A 2CWQA 2O4DA 3AA0A 1KNCA 2GMYA 3AAAA 5DIPA 1GU9A 3LK2A 2JN8A 5DIKA 3AA7A 2Q0TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PRR A;  2IJC A;  1P8C A;  2QEU A;  3LVY A;  3C1L A;  1LW1 A;  3BEY A;  2OUW A;  4G9Q A;  2PFX A;  1ME5 A;  2OYO A;  3D7I A;  1VKE A;  2AF7 A;  2CWQ A;  2O4D A;  1KNC A;  2GMY A;  5DIP A;  1GU9 A;  5DIK A;  2Q0T A; 
#chains in the Genus database with same CATH topology
 3AAE A;  2PRR A;  2IJC A;  1P8C A;  4AKR A;  2QEU A;  3LVY A;  2KXP A;  3C1L A;  1LW1 A;  3LK3 A;  3BEY A;  2OUW A;  4G9Q A;  2PFX A;  3AA6 A;  3LK4 1;  1ME5 A;  5AFU K;  5ADX K;  2OYO A;  3D7I A;  2ES9 A;  2KZ7 A;  3AA1 A;  1VKE A;  1IZN A;  2AF7 A;  2CWQ A;  2O4D A;  3AA0 A;  1KNC A;  2GMY A;  3AAA A;  5DIP A;  1GU9 A;  3LK2 A;  2JN8 A;  5DIK A;  3AA7 A;  2Q0T A; 
#chains in the Genus database with same CATH homology
 3AAE A;  2PRR A;  2IJC A;  1P8C A;  4AKR A;  2QEU A;  3LVY A;  2KXP A;  3C1L A;  1LW1 A;  3LK3 A;  3BEY A;  2OUW A;  4G9Q A;  2PFX A;  3AA6 A;  3LK4 1;  1ME5 A;  5AFU K;  5ADX K;  2OYO A;  3D7I A;  2ES9 A;  2KZ7 A;  3AA1 A;  1VKE A;  1IZN A;  2AF7 A;  2CWQ A;  2O4D A;  3AA0 A;  1KNC A;  2GMY A;  3AAA A;  5DIP A;  1GU9 A;  3LK2 A;  2JN8 A;  5DIK A;  3AA7 A;  2Q0T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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