1LW1A

Crystal structure of mycobacterium tuberculosis alkylperoxidase ahpd h137f mutant
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
175
structure length
175
Chain Sequence
b'IEKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSHCLVAFEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALSPS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ALKYLHYDROPEROXIDASE D
publication title The Mechanism of Mycobacterium tuberculosis Alkylhydroperoxidase AhpD as Defined by Mutagenesis, Crystallography, and Kinetics
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Oxidoreductase
total genus 66
structure length 175
sequence length 175
chains with identical sequence B, C
ec nomenclature ec 1.11.1.15: Peroxiredoxin.
pdb deposition date 2002-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1lw1A00
2QEUA 2PRRA 4G9QA 1VKEA 2AF7A 1ME5A 2IJCA 5DIKA 2O4DA 3C1LA 1GU9A 1LW1A 1P8CA 2GMYA 2PFXA 5DIPA 3LVYA 3D7IA 2CWQA 3BEYA 1KNCA 2OYOA 2Q0TA 2OUWA
chains in the Genus database with same CATH superfamily
4AKRA 3LK3A 2JN8A 2QEUA 2PRRA 4G9QA 3AA7A 3LK2A 1VKEA 1IZNA 2AF7A 2IJCA 1ME5A 5DIKA 2O4DA 3C1LA 2KZ7A 5ADXK 1GU9A 2ES9A 1LW1A 1P8CA 3AA6A 3AAAA 2GMYA 2PFXA 5DIPA 3LVYA 3AA0A 3AAEA 3D7IA 5AFUK 3LK41 2CWQA 2KXPA 1KNCA 2OYOA 3BEYA 2Q0TA 3AA1A 2OUWA
chains in the Genus database with same CATH topology
4AKRA 3LK3A 2JN8A 2QEUA 2PRRA 4G9QA 3AA7A 3LK2A 1VKEA 1IZNA 2AF7A 2IJCA 1ME5A 5DIKA 2O4DA 3C1LA 2KZ7A 5ADXK 1GU9A 2ES9A 1LW1A 1P8CA 3AA6A 3AAAA 2GMYA 2PFXA 5DIPA 3LVYA 3AA0A 3AAEA 3D7IA 5AFUK 3LK41 2CWQA 2KXPA 1KNCA 2OYOA 3BEYA 2Q0TA 3AA1A 2OUWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QEU A;  2PRR A;  4G9Q A;  1VKE A;  2AF7 A;  1ME5 A;  2IJC A;  5DIK A;  2O4D A;  3C1L A;  1GU9 A;  1LW1 A;  1P8C A;  2GMY A;  2PFX A;  5DIP A;  3LVY A;  3D7I A;  2CWQ A;  3BEY A;  1KNC A;  2OYO A;  2Q0T A;  2OUW A; 
#chains in the Genus database with same CATH topology
 4AKR A;  3LK3 A;  2JN8 A;  2QEU A;  2PRR A;  4G9Q A;  3AA7 A;  3LK2 A;  1VKE A;  1IZN A;  2AF7 A;  2IJC A;  1ME5 A;  5DIK A;  2O4D A;  3C1L A;  2KZ7 A;  5ADX K;  1GU9 A;  2ES9 A;  1LW1 A;  1P8C A;  3AA6 A;  3AAA A;  2GMY A;  2PFX A;  5DIP A;  3LVY A;  3AA0 A;  3AAE A;  3D7I A;  5AFU K;  3LK4 1;  2CWQ A;  2KXP A;  1KNC A;  2OYO A;  3BEY A;  2Q0T A;  3AA1 A;  2OUW A; 
#chains in the Genus database with same CATH homology
 4AKR A;  3LK3 A;  2JN8 A;  2QEU A;  2PRR A;  4G9Q A;  3AA7 A;  3LK2 A;  1VKE A;  1IZN A;  2AF7 A;  2IJC A;  1ME5 A;  5DIK A;  2O4D A;  3C1L A;  2KZ7 A;  5ADX K;  1GU9 A;  2ES9 A;  1LW1 A;  1P8C A;  3AA6 A;  3AAA A;  2GMY A;  2PFX A;  5DIP A;  3LVY A;  3AA0 A;  3AAE A;  3D7I A;  5AFU K;  3LK4 1;  2CWQ A;  2KXP A;  1KNC A;  2OYO A;  3BEY A;  2Q0T A;  3AA1 A;  2OUW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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