1LXHA

Solution structure of alpha-cobratoxin complexed with a cognate peptide (minimized average structure)
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
71
structure length
71
Chain Sequence
IRCFITPDITSKDCPNGHVCYTKTWCDAFCSIRGKRVDLGCAATCPTVKTGVDIQCCSTDNCNPFPTRKRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords LONG NEUROTOXIN 1
publication title NMR-based Binding Screen and Structural Analysis of the Complex Formed between alpha-Cobratoxin and an 18-mer Cognate Peptide Derived from the alpha1 Subunit of the Nicotinic Acetylcholine Receptor from Torpedo californica
pubmed doi rcsb
source organism Torpedo californica
total genus 1
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2002-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1lxhA00
2MJYA 4P7UA 1CXNA 1CDTA 4QTIU 1BTEA 1KS6A 1YWHA 1F8UB 1IK8A 1IQ9A 6EBXA 3QB4B 1NYUA 1CTXA 2PJYC 1KTZB 2CRTA 1HC9B 2JQPA 2H7ZA 2UWRA 1JBDA 1FSSB 1KU6B 1NEAA 4DO8A 1B41B 4FAOC 1G6MA 1ONJA 1LXHA 1QKEA 1JE9A 1IJCA 1LX5B 1KC4A 1FFJA 1CVOA 2HLRA 2H5FA 1HOYA 1NTNA 1COEA 4BDTB 2CCXA 1KBAA 2HLQA 1LJZA 1BXPA 1LSIA 4FAOE 2MUOA 1LXGA 4XJJA 2H62D 1CRFA 1ERGA 4UY2C 2MJ4A 1CDSA 4LFTA 2H64C 1NYSA 1NORA 5IMTD 1UG4A 4ZQYA 2MUPA 1H0JA 1KL8A 2BHIA 1CXOA 2BTXA 1V6PA 3BT1U 1KBTA 3NDSA 1HAJA 1ABTA 2H8UA 4OM4A 5DU1A 3EVSC 5DO6A 4OM5A 1KXIA 1TXBA 3U73U 2PJYB 1ZADA 2JVEA 2GOOC 1I02A 1MAHF 2VLWA 3ERAA 2QJAC 1KBSA 5EBXA 2K3GA 1VB0A 3KFDI 1FF4A 1NXBA 2X8BB 1F94A 1ERAA 1W6BA 1CB9A 2CRSA 2L03A 1IDGA 2I9BE 4BIKB 5IMYC 4EY8B 2L5SA 2CTXA 1FASA 1TGXA 1QKDA 4HQPF 1CDQA 1CODA 2OFSA 2QC1A 1CCQA 3HH7A 4AEAA 3U74U 2ERAA 2GOOB 1S4YA 2H7ZB 2MJ0A 3NEQA 3BT2U 5DZ5A 1HAAA 1HC9A 1KFHA 2H62C 1JGKA 1IDIA 1IKCA 3NH7A 1ES7B 2LA1A 1DRSA 3LAQU 2H64B 2J8BA 2LCRA 1CREA 1TXAA 2UX2A 1MR6A 2NBTA 3PLCA 3FEVA 1TFSA 4IYEA 4RUDA 1NTXA 1M9ZA 1CDRA 1PLOA 2QJBC 1L4WA 1FSCA 2MFAA 3KFDE 1FRAA 1RGJA 2CDXA 2MHYA 1IDHA 3EBXA 1REWC 2ABXA 2N99A 3VTSA 1IDLA 1QM7A 2FD6U 1CHVS 1XT3A 1RL5A 2QJ9C
chains in the Genus database with same CATH superfamily
2MJYA 4P7UA 1CXNA 1CDTA 4QTIU 1BTEA 1KS6A 1YWHA 1F8UB 1IK8A 1IQ9A 6EBXA 3QB4B 1NYUA 1CTXA 2PJYC 1KTZB 2CRTA 1HC9B 2JQPA 2H7ZA 2UWRA 1JBDA 1FSSB 1KU6B 1NEAA 4DO8A 1B41B 4FAOC 1G6MA 1ONJA 1LXHA 1QKEA 1JE9A 1IJCA 1LX5B 1KC4A 1FFJA 1CVOA 2HLRA 2H5FA 1HOYA 1NTNA 1COEA 4BDTB 2CCXA 1KBAA 2HLQA 1LJZA 1BXPA 1LSIA 4FAOE 2MUOA 1LXGA 4XJJA 2H62D 1CRFA 1ERGA 4UY2C 2MJ4A 1CDSA 4LFTA 2H64C 1NYSA 1NORA 5IMTD 1UG4A 4ZQYA 2MUPA 1H0JA 1KL8A 2BHIA 1CXOA 2BTXA 1V6PA 3BT1U 1KBTA 3NDSA 1HAJA 1ABTA 2H8UA 4OM4A 5DU1A 3EVSC 5DO6A 4OM5A 1KXIA 1TXBA 3U73U 2PJYB 1ZADA 2JVEA 2GOOC 1I02A 1MAHF 2VLWA 3ERAA 2QJAC 1KBSA 5EBXA 2K3GA 1VB0A 3KFDI 1FF4A 1NXBA 2X8BB 1F94A 1ERAA 1W6BA 1CB9A 2CRSA 2L03A 1IDGA 2I9BE 4BIKB 5IMYC 4EY8B 2L5SA 2CTXA 1FASA 1TGXA 1QKDA 4HQPF 1CDQA 1CODA 2OFSA 2QC1A 1CCQA 3HH7A 4AEAA 3U74U 2ERAA 2GOOB 1S4YA 2H7ZB 2MJ0A 3NEQA 3BT2U 5DZ5A 1HAAA 1HC9A 1KFHA 2H62C 1JGKA 1IDIA 1IKCA 3NH7A 1ES7B 2LA1A 1DRSA 3LAQU 2H64B 2J8BA 2LCRA 1CREA 1TXAA 2UX2A 1MR6A 2NBTA 3PLCA 3FEVA 1TFSA 4IYEA 4KSNA 4RUDA 1NTXA 1M9ZA 1CDRA 1PLOA 2QJBC 1L4WA 1FSCA 2MFAA 3KFDE 1FRAA 1RGJA 2CDXA 2MHYA 1IDHA 3EBXA 1REWC 2ABXA 2N99A 3VTSA 1IDLA 1QM7A 2FD6U 1CHVS 1XT3A 1RL5A 2QJ9C
chains in the Genus database with same CATH topology
2MJYA 4P7UA 1CXNA 1CDTA 4QTIU 1BTEA 1KS6A 1YWHA 1F8UB 1IK8A 1IQ9A 6EBXA 3QB4B 1NYUA 1CTXA 2PJYC 1KTZB 2CRTA 1HC9B 2JQPA 2H7ZA 2UWRA 1JBDA 1FSSB 1KU6B 1NEAA 4DO8A 1B41B 4FAOC 1G6MA 1ONJA 1LXHA 1QKEA 1JE9A 1IJCA 1LX5B 1KC4A 1FFJA 1CVOA 2HLRA 2H5FA 1HOYA 1NTNA 1COEA 4BDTB 2CCXA 1KBAA 2HLQA 1LJZA 1BXPA 1LSIA 4FAOE 2MUOA 1LXGA 4XJJA 2H62D 1CRFA 1ERGA 4UY2C 2MJ4A 1CDSA 4LFTA 2H64C 1NYSA 1NORA 5IMTD 1UG4A 4ZQYA 2MUPA 1H0JA 1KL8A 2BHIA 1CXOA 2BTXA 1V6PA 3BT1U 1KBTA 3NDSA 1HAJA 1ABTA 2H8UA 4OM4A 5DU1A 3EVSC 5DO6A 4OM5A 1KXIA 1TXBA 3U73U 2PJYB 1ZADA 2JVEA 2GOOC 1I02A 1MAHF 2VLWA 3ERAA 2QJAC 1KBSA 5EBXA 2K3GA 1VB0A 3KFDI 1FF4A 1NXBA 2X8BB 1F94A 1ERAA 1W6BA 1CB9A 2CRSA 2L03A 1IDGA 2I9BE 4BIKB 5IMYC 4EY8B 2L5SA 2CTXA 1FASA 1TGXA 1QKDA 4HQPF 1CDQA 1CODA 2OFSA 2QC1A 1CCQA 3HH7A 4AEAA 3U74U 2ERAA 2GOOB 1S4YA 2H7ZB 2MJ0A 3NEQA 3BT2U 5DZ5A 1HAAA 1HC9A 1KFHA 2H62C 1JGKA 1IDIA 1IKCA 3NH7A 1ES7B 2LA1A 1DRSA 3LAQU 2H64B 2J8BA 2LCRA 1CREA 1TXAA 2UX2A 1MR6A 2NBTA 3PLCA 3FEVA 1TFSA 4IYEA 4KSNA 4RUDA 1NTXA 1M9ZA 1CDRA 1PLOA 2QJBC 1L4WA 1FSCA 2MFAA 3KFDE 1FRAA 1RGJA 2CDXA 2MHYA 1IDHA 3EBXA 1REWC 2ABXA 2N99A 3VTSA 1IDLA 1QM7A 2FD6U 1CHVS 1XT3A 1RL5A 2QJ9C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MJY A;  4P7U A;  1CXN A;  1CDT A;  4QTI U;  1BTE A;  1KS6 A;  1YWH A;  1F8U B;  1IK8 A;  1IQ9 A;  6EBX A;  3QB4 B;  1NYU A;  1CTX A;  2PJY C;  1KTZ B;  2CRT A;  1HC9 B;  2JQP A;  2H7Z A;  2UWR A;  1JBD A;  1FSS B;  1KU6 B;  1NEA A;  4DO8 A;  1B41 B;  4FAO C;  1G6M A;  1ONJ A;  1LXH A;  1QKE A;  1JE9 A;  1IJC A;  1LX5 B;  1KC4 A;  1FFJ A;  1CVO A;  2HLR A;  2H5F A;  1HOY A;  1NTN A;  1COE A;  4BDT B;  2CCX A;  1KBA A;  2HLQ A;  1LJZ A;  1BXP A;  1LSI A;  4FAO E;  2MUO A;  1LXG A;  4XJJ A;  2H62 D;  1CRF A;  1ERG A;  4UY2 C;  2MJ4 A;  1CDS A;  4LFT A;  2H64 C;  1NYS A;  1NOR A;  5IMT D;  1UG4 A;  4ZQY A;  2MUP A;  1H0J A;  1KL8 A;  2BHI A;  1CXO A;  2BTX A;  1V6P A;  3BT1 U;  1KBT A;  3NDS A;  1HAJ A;  1ABT A;  2H8U A;  4OM4 A;  5DU1 A;  3EVS C;  5DO6 A;  4OM5 A;  1KXI A;  1TXB A;  3U73 U;  2PJY B;  1ZAD A;  2JVE A;  2GOO C;  1I02 A;  1MAH F;  2VLW A;  3ERA A;  2QJA C;  1KBS A;  5EBX A;  2K3G A;  1VB0 A;  3KFD I;  1FF4 A;  1NXB A;  2X8B B;  1F94 A;  1ERA A;  1W6B A;  1CB9 A;  2CRS A;  2L03 A;  1IDG A;  2I9B E;  4BIK B;  5IMY C;  4EY8 B;  2L5S A;  2CTX A;  1FAS A;  1TGX A;  1QKD A;  4HQP F;  1CDQ A;  1COD A;  2OFS A;  2QC1 A;  1CCQ A;  3HH7 A;  4AEA A;  3U74 U;  2ERA A;  2GOO B;  1S4Y A;  2H7Z B;  2MJ0 A;  3NEQ A;  3BT2 U;  5DZ5 A;  1HAA A;  1HC9 A;  1KFH A;  2H62 C;  1JGK A;  1IDI A;  1IKC A;  3NH7 A;  1ES7 B;  2LA1 A;  1DRS A;  3LAQ U;  2H64 B;  2J8B A;  2LCR A;  1CRE A;  1TXA A;  2UX2 A;  1MR6 A;  2NBT A;  3PLC A;  3FEV A;  1TFS A;  4IYE A;  4RUD A;  1NTX A;  1M9Z A;  1CDR A;  1PLO A;  2QJB C;  1L4W A;  1FSC A;  2MFA A;  3KFD E;  1FRA A;  1RGJ A;  2CDX A;  2MHY A;  1IDH A;  3EBX A;  1REW C;  2ABX A;  2N99 A;  3VTS A;  1IDL A;  1QM7 A;  2FD6 U;  1CHV S;  1XT3 A;  1RL5 A;  2QJ9 C; 
#chains in the Genus database with same CATH topology
 2MJY A;  4P7U A;  1CXN A;  1CDT A;  4QTI U;  1BTE A;  1KS6 A;  1YWH A;  1F8U B;  1IK8 A;  1IQ9 A;  6EBX A;  3QB4 B;  1NYU A;  1CTX A;  2PJY C;  1KTZ B;  2CRT A;  1HC9 B;  2JQP A;  2H7Z A;  2UWR A;  1JBD A;  1FSS B;  1KU6 B;  1NEA A;  4DO8 A;  1B41 B;  4FAO C;  1G6M A;  1ONJ A;  1LXH A;  1QKE A;  1JE9 A;  1IJC A;  1LX5 B;  1KC4 A;  1FFJ A;  1CVO A;  2HLR A;  2H5F A;  1HOY A;  1NTN A;  1COE A;  4BDT B;  2CCX A;  1KBA A;  2HLQ A;  1LJZ A;  1BXP A;  1LSI A;  4FAO E;  2MUO A;  1LXG A;  4XJJ A;  2H62 D;  1CRF A;  1ERG A;  4UY2 C;  2MJ4 A;  1CDS A;  4LFT A;  2H64 C;  1NYS A;  1NOR A;  5IMT D;  1UG4 A;  4ZQY A;  2MUP A;  1H0J A;  1KL8 A;  2BHI A;  1CXO A;  2BTX A;  1V6P A;  3BT1 U;  1KBT A;  3NDS A;  1HAJ A;  1ABT A;  2H8U A;  4OM4 A;  5DU1 A;  3EVS C;  5DO6 A;  4OM5 A;  1KXI A;  1TXB A;  3U73 U;  2PJY B;  1ZAD A;  2JVE A;  2GOO C;  1I02 A;  1MAH F;  2VLW A;  3ERA A;  2QJA C;  1KBS A;  5EBX A;  2K3G A;  1VB0 A;  3KFD I;  1FF4 A;  1NXB A;  2X8B B;  1F94 A;  1ERA A;  1W6B A;  1CB9 A;  2CRS A;  2L03 A;  1IDG A;  2I9B E;  4BIK B;  5IMY C;  4EY8 B;  2L5S A;  2CTX A;  1FAS A;  1TGX A;  1QKD A;  4HQP F;  1CDQ A;  1COD A;  2OFS A;  2QC1 A;  1CCQ A;  3HH7 A;  4AEA A;  3U74 U;  2ERA A;  2GOO B;  1S4Y A;  2H7Z B;  2MJ0 A;  3NEQ A;  3BT2 U;  5DZ5 A;  1HAA A;  1HC9 A;  1KFH A;  2H62 C;  1JGK A;  1IDI A;  1IKC A;  3NH7 A;  1ES7 B;  2LA1 A;  1DRS A;  3LAQ U;  2H64 B;  2J8B A;  2LCR A;  1CRE A;  1TXA A;  2UX2 A;  1MR6 A;  2NBT A;  3PLC A;  3FEV A;  1TFS A;  4IYE A;  4KSN A;  4RUD A;  1NTX A;  1M9Z A;  1CDR A;  1PLO A;  2QJB C;  1L4W A;  1FSC A;  2MFA A;  3KFD E;  1FRA A;  1RGJ A;  2CDX A;  2MHY A;  1IDH A;  3EBX A;  1REW C;  2ABX A;  2N99 A;  3VTS A;  1IDL A;  1QM7 A;  2FD6 U;  1CHV S;  1XT3 A;  1RL5 A;  2QJ9 C; 
#chains in the Genus database with same CATH homology
 2MJY A;  4P7U A;  1CXN A;  1CDT A;  4QTI U;  1BTE A;  1KS6 A;  1YWH A;  1F8U B;  1IK8 A;  1IQ9 A;  6EBX A;  3QB4 B;  1NYU A;  1CTX A;  2PJY C;  1KTZ B;  2CRT A;  1HC9 B;  2JQP A;  2H7Z A;  2UWR A;  1JBD A;  1FSS B;  1KU6 B;  1NEA A;  4DO8 A;  1B41 B;  4FAO C;  1G6M A;  1ONJ A;  1LXH A;  1QKE A;  1JE9 A;  1IJC A;  1LX5 B;  1KC4 A;  1FFJ A;  1CVO A;  2HLR A;  2H5F A;  1HOY A;  1NTN A;  1COE A;  4BDT B;  2CCX A;  1KBA A;  2HLQ A;  1LJZ A;  1BXP A;  1LSI A;  4FAO E;  2MUO A;  1LXG A;  4XJJ A;  2H62 D;  1CRF A;  1ERG A;  4UY2 C;  2MJ4 A;  1CDS A;  4LFT A;  2H64 C;  1NYS A;  1NOR A;  5IMT D;  1UG4 A;  4ZQY A;  2MUP A;  1H0J A;  1KL8 A;  2BHI A;  1CXO A;  2BTX A;  1V6P A;  3BT1 U;  1KBT A;  3NDS A;  1HAJ A;  1ABT A;  2H8U A;  4OM4 A;  5DU1 A;  3EVS C;  5DO6 A;  4OM5 A;  1KXI A;  1TXB A;  3U73 U;  2PJY B;  1ZAD A;  2JVE A;  2GOO C;  1I02 A;  1MAH F;  2VLW A;  3ERA A;  2QJA C;  1KBS A;  5EBX A;  2K3G A;  1VB0 A;  3KFD I;  1FF4 A;  1NXB A;  2X8B B;  1F94 A;  1ERA A;  1W6B A;  1CB9 A;  2CRS A;  2L03 A;  1IDG A;  2I9B E;  4BIK B;  5IMY C;  4EY8 B;  2L5S A;  2CTX A;  1FAS A;  1TGX A;  1QKD A;  4HQP F;  1CDQ A;  1COD A;  2OFS A;  2QC1 A;  1CCQ A;  3HH7 A;  4AEA A;  3U74 U;  2ERA A;  2GOO B;  1S4Y A;  2H7Z B;  2MJ0 A;  3NEQ A;  3BT2 U;  5DZ5 A;  1HAA A;  1HC9 A;  1KFH A;  2H62 C;  1JGK A;  1IDI A;  1IKC A;  3NH7 A;  1ES7 B;  2LA1 A;  1DRS A;  3LAQ U;  2H64 B;  2J8B A;  2LCR A;  1CRE A;  1TXA A;  2UX2 A;  1MR6 A;  2NBT A;  3PLC A;  3FEV A;  1TFS A;  4IYE A;  4KSN A;  4RUD A;  1NTX A;  1M9Z A;  1CDR A;  1PLO A;  2QJB C;  1L4W A;  1FSC A;  2MFA A;  3KFD E;  1FRA A;  1RGJ A;  2CDX A;  2MHY A;  1IDH A;  3EBX A;  1REW C;  2ABX A;  2N99 A;  3VTS A;  1IDL A;  1QM7 A;  2FD6 U;  1CHV S;  1XT3 A;  1RL5 A;  2QJ9 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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