1LXLA

Nmr structure of bcl-xl, an inhibitor of programmed cell death, minimized average structure
Total Genus 41
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
221
structure length
221
Chain Sequence
MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERLEHHHHHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Apoptosis
molecule keywords BCL-XL
publication title X-ray and NMR structure of human Bcl-xL, an inhibitor of programmed cell death.
pubmed doi rcsb
source organism Homo sapiens
total genus 41
structure length 221
sequence length 221
ec nomenclature
pdb deposition date 1996-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
A PF02180 BH4 Bcl-2 homology region 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 1lxlA00
4MI8A 2O2MA 4BD7A 4HW2A 3IHCA 5KU9A 3CVAX 1ZY3A 4BPJA 5IF4A 5KTGA 5FC4A 4ZIGA 1YSGA 4BDUA 3DVUA 2IMTA 2NLAA 4OQ5A 4B4SA 1MK3A 2O2NA 3D7VA 5C3FA 1YSNA 2KUAA 2VOGA 2V6QA 2YV6A 4ZIFA 1R2GA 1DDBA 2RODA 4ZBFA 2LR1A 1R2EA 2PQKA 4S0OA 3KJ0A 3KZ0A 5FDRA 2VOHA 2VOFA 1O0LA 4HW3A 1F16A 2O21A 2ABOA 2BIDA 3MQPA 4YJ4A 5FDOA 5JSBA 2MHSA 1WSXA 4ZBIA 2O2FA 2XPXA 1Q59A 4BPIA 3IIHA 4OYDA 2NL9A 4BD6A 1OHUA 4K5BC 1PQ0A 5IEZA 5FMIA 3QBRA 4ZEQA 4OQ6A 1AF3A 4U2UA 4BD8A 2JM6B 1BXLA 3KJ2A 3IO9A 5C6HA 3I1HA 1PQ1A 1R2DA 2JCNA 1MAZA 3WIYA 4U2VA 2A5YA 4S0PA 2VM6A 3IIGA 2MEJA 1G5MA 4QVXA 2O22A 4G35A 1LXLA 3ILCA 4YK9A 2KBWA 3IHEA 3WIXA 4BD2A 4ZIIA 2VOIA 1TY4A 2ME8A 3IHDA 1R2HA 4QNQA 1GJHA 1YSWA 2ROCA 2BZWA 2W3LA 4WMRA 4ZIEA 1R2IA 2XA0A 3MK8A 1K3KA 1YSIA 3BL2A 4ZIHA 1G5JA 2WH6A 2M5BA 4HW4A 3PK1A 2B48A 2IMSA 3KJ1A 2K7WA
chains in the Genus database with same CATH superfamily
4MI8A 2O2MA 4BD7A 4HW2A 3IHCA 5KU9A 4UF1A 3CVAX 1ZY3A 4BPJA 5IF4A 4UF3A 5KTGA 5FC4A 4ZIGA 2I39A 1YSGA 4BDUA 3DVUA 2IMTA 2NLAA 4OQ5A 4B4SA 1MK3A 4D2MA 2O2NA 3D7VA 5C3FA 1YSNA 2KUAA 2VOGA 2V6QA 2YV6A 4ZIFA 1R2GA 1DDBA 2RODA 4ZBFA 2LR1A 1R2EA 2PQKA 4S0OA 3KJ0A 3KZ0A 5FDRA 4LQKA 2VOHA 2VOFA 1O0LA 4HW3A 1F16A 2O21A 2ABOA 2BIDA 3MQPA 4YJ4A 5FDOA 5JSBA 2MHSA 1WSXA 4ZBIA 2O2FA 2XPXA 1Q59A 4BPIA 3IIHA 4OYDA 2NL9A 4BD6A 1OHUA 4K5BC 2JBYA 1PQ0A 5IEZA 5FMIA 3QBRA 4ZEQA 4OQ6A 1AF3A 4U2UA 4BD8A 2JM6B 1BXLA 2JBXA 3KJ2A 3IO9A 5C6HA 3I1HA 1PQ1A 1R2DA 2JCNA 2K36A 1MAZA 3WIYA 4U2VA 2A5YA 2VVXA 4S0PA 4BBCA 2VM6A 2VTYA 3IIGA 2MEJA 4BBBA 1G5MA 4QVXA 2O22A 4G35A 1LXLA 3ILCA 2VVYA 4YK9A 2KBWA 3IHEA 3WIXA 4BD2A 4M0SA 2VVWA 4ZIIA 2VOIA 1TY4A 2ME8A 3JRVA 2O42A 1R2HA 3IHDA 4QNQA 1GJHA 4D2LA 1YSWA 2ROCA 2BZWA 2W3LA 4BBDA 4WMRA 4ZIEA 1R2IA 2XA0A 3MK8A 1K3KA 1YSIA 3BL2A 4ZIHA 2UXEA 1G5JA 2WH6A 2M5BA 4UF2A 4HW4A 3PK1A 2B48A 2IMSA 3KJ1A 2K7WA
chains in the Genus database with same CATH topology
4MI8A 2O2MA 4BD7A 4HW2A 3IHCA 5KU9A 3CVAX 1ZY3A 4BPJA 5IF4A 5KTGA 5FC4A 4ZIGA 1YSGA 4BDUA 3DVUA 2IMTA 2NLAA 4OQ5A 4B4SA 1MK3A 2O2NA 3D7VA 5C3FA 1YSNA 2KUAA 2VOGA 2V6QA 2YV6A 4ZIFA 1R2GA 1DDBA 2RODA 4ZBFA 2LR1A 1R2EA 2PQKA 4S0OA 3KJ0A 3KZ0A 5FDRA 2VOHA 2VOFA 1O0LA 4HW3A 1F16A 2O21A 2ABOA 2BIDA 3MQPA 4YJ4A 5FDOA 5JSBA 2MHSA 1WSXA 4ZBIA 2O2FA 2XPXA 1Q59A 4BPIA 3IIHA 4OYDA 2NL9A 4BD6A 1OHUA 4K5BC 1PQ0A 5IEZA 5FMIA 3QBRA 4ZEQA 4OQ6A 1AF3A 4U2UA 4BD8A 2JM6B 1BXLA 3KJ2A 3IO9A 5C6HA 3I1HA 1PQ1A 1R2DA 2JCNA 1MAZA 3WIYA 4U2VA 2A5YA 4S0PA 2VM6A 3IIGA 2MEJA 1G5MA 4QVXA 2O22A 4G35A 1LXLA 3ILCA 4YK9A 2KBWA 3IHEA 3WIXA 4BD2A 4ZIIA 2VOIA 1TY4A 2ME8A 3IHDA 1R2HA 4QNQA 1GJHA 1YSWA 2ROCA 2BZWA 2W3LA 4WMRA 4ZIEA 1R2IA 2XA0A 3MK8A 1K3KA 1YSIA 3BL2A 4ZIHA 1G5JA 2WH6A 2M5BA 4HW4A 3PK1A 2B48A 2IMSA 3KJ1A 2K7WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MI8 A;  2O2M A;  4BD7 A;  4HW2 A;  3IHC A;  5KU9 A;  3CVA X;  1ZY3 A;  4BPJ A;  5IF4 A;  5KTG A;  5FC4 A;  4ZIG A;  1YSG A;  4BDU A;  3DVU A;  2IMT A;  2NLA A;  4OQ5 A;  4B4S A;  1MK3 A;  2O2N A;  3D7V A;  5C3F A;  1YSN A;  2KUA A;  2VOG A;  2V6Q A;  2YV6 A;  4ZIF A;  1R2G A;  1DDB A;  2ROD A;  4ZBF A;  2LR1 A;  1R2E A;  2PQK A;  4S0O A;  3KJ0 A;  3KZ0 A;  5FDR A;  2VOH A;  2VOF A;  1O0L A;  4HW3 A;  1F16 A;  2O21 A;  2ABO A;  2BID A;  3MQP A;  4YJ4 A;  5FDO A;  5JSB A;  2MHS A;  1WSX A;  4ZBI A;  2O2F A;  2XPX A;  1Q59 A;  4BPI A;  3IIH A;  4OYD A;  2NL9 A;  4BD6 A;  1OHU A;  4K5B C;  1PQ0 A;  5IEZ A;  5FMI A;  3QBR A;  4ZEQ A;  4OQ6 A;  1AF3 A;  4U2U A;  4BD8 A;  2JM6 B;  1BXL A;  3KJ2 A;  3IO9 A;  5C6H A;  3I1H A;  1PQ1 A;  1R2D A;  2JCN A;  1MAZ A;  3WIY A;  4U2V A;  2A5Y A;  4S0P A;  2VM6 A;  3IIG A;  2MEJ A;  1G5M A;  4QVX A;  2O22 A;  4G35 A;  1LXL A;  3ILC A;  4YK9 A;  2KBW A;  3IHE A;  3WIX A;  4BD2 A;  4ZII A;  2VOI A;  1TY4 A;  2ME8 A;  3IHD A;  1R2H A;  4QNQ A;  1GJH A;  1YSW A;  2ROC A;  2BZW A;  2W3L A;  4WMR A;  4ZIE A;  1R2I A;  2XA0 A;  3MK8 A;  1K3K A;  1YSI A;  3BL2 A;  4ZIH A;  1G5J A;  2WH6 A;  2M5B A;  4HW4 A;  3PK1 A;  2B48 A;  2IMS A;  3KJ1 A;  2K7W A; 
#chains in the Genus database with same CATH topology
 4MI8 A;  2O2M A;  4BD7 A;  4HW2 A;  3IHC A;  5KU9 A;  4UF1 A;  3CVA X;  1ZY3 A;  4BPJ A;  5IF4 A;  4UF3 A;  5KTG A;  5FC4 A;  4ZIG A;  2I39 A;  1YSG A;  4BDU A;  3DVU A;  2IMT A;  2NLA A;  4OQ5 A;  4B4S A;  1MK3 A;  4D2M A;  2O2N A;  3D7V A;  5C3F A;  1YSN A;  2KUA A;  2VOG A;  2V6Q A;  2YV6 A;  4ZIF A;  1R2G A;  1DDB A;  2ROD A;  4ZBF A;  2LR1 A;  1R2E A;  2PQK A;  4S0O A;  3KJ0 A;  3KZ0 A;  5FDR A;  4LQK A;  2VOH A;  2VOF A;  1O0L A;  4HW3 A;  1F16 A;  2O21 A;  2ABO A;  2BID A;  3MQP A;  4YJ4 A;  5FDO A;  5JSB A;  2MHS A;  1WSX A;  4ZBI A;  2O2F A;  2XPX A;  1Q59 A;  4BPI A;  3IIH A;  4OYD A;  2NL9 A;  4BD6 A;  1OHU A;  4K5B C;  2JBY A;  1PQ0 A;  5IEZ A;  5FMI A;  3QBR A;  4ZEQ A;  4OQ6 A;  1AF3 A;  4U2U A;  4BD8 A;  2JM6 B;  1BXL A;  2JBX A;  3KJ2 A;  3IO9 A;  5C6H A;  3I1H A;  1PQ1 A;  1R2D A;  2JCN A;  2K36 A;  1MAZ A;  3WIY A;  4U2V A;  2A5Y A;  2VVX A;  4S0P A;  4BBC A;  2VM6 A;  2VTY A;  3IIG A;  2MEJ A;  4BBB A;  1G5M A;  4QVX A;  2O22 A;  4G35 A;  1LXL A;  3ILC A;  2VVY A;  4YK9 A;  2KBW A;  3IHE A;  3WIX A;  4BD2 A;  4M0S A;  2VVW A;  4ZII A;  2VOI A;  1TY4 A;  2ME8 A;  3JRV A;  2O42 A;  1R2H A;  3IHD A;  4QNQ A;  1GJH A;  4D2L A;  1YSW A;  2ROC A;  2BZW A;  2W3L A;  4BBD A;  4WMR A;  4ZIE A;  1R2I A;  2XA0 A;  3MK8 A;  1K3K A;  1YSI A;  3BL2 A;  4ZIH A;  2UXE A;  1G5J A;  2WH6 A;  2M5B A;  4UF2 A;  4HW4 A;  3PK1 A;  2B48 A;  2IMS A;  3KJ1 A;  2K7W A; 
#chains in the Genus database with same CATH homology
 4MI8 A;  2O2M A;  4BD7 A;  4HW2 A;  3IHC A;  5KU9 A;  3CVA X;  1ZY3 A;  4BPJ A;  5IF4 A;  5KTG A;  5FC4 A;  4ZIG A;  1YSG A;  4BDU A;  3DVU A;  2IMT A;  2NLA A;  4OQ5 A;  4B4S A;  1MK3 A;  2O2N A;  3D7V A;  5C3F A;  1YSN A;  2KUA A;  2VOG A;  2V6Q A;  2YV6 A;  4ZIF A;  1R2G A;  1DDB A;  2ROD A;  4ZBF A;  2LR1 A;  1R2E A;  2PQK A;  4S0O A;  3KJ0 A;  3KZ0 A;  5FDR A;  2VOH A;  2VOF A;  1O0L A;  4HW3 A;  1F16 A;  2O21 A;  2ABO A;  2BID A;  3MQP A;  4YJ4 A;  5FDO A;  5JSB A;  2MHS A;  1WSX A;  4ZBI A;  2O2F A;  2XPX A;  1Q59 A;  4BPI A;  3IIH A;  4OYD A;  2NL9 A;  4BD6 A;  1OHU A;  4K5B C;  1PQ0 A;  5IEZ A;  5FMI A;  3QBR A;  4ZEQ A;  4OQ6 A;  1AF3 A;  4U2U A;  4BD8 A;  2JM6 B;  1BXL A;  3KJ2 A;  3IO9 A;  5C6H A;  3I1H A;  1PQ1 A;  1R2D A;  2JCN A;  1MAZ A;  3WIY A;  4U2V A;  2A5Y A;  4S0P A;  2VM6 A;  3IIG A;  2MEJ A;  1G5M A;  4QVX A;  2O22 A;  4G35 A;  1LXL A;  3ILC A;  4YK9 A;  2KBW A;  3IHE A;  3WIX A;  4BD2 A;  4ZII A;  2VOI A;  1TY4 A;  2ME8 A;  3IHD A;  1R2H A;  4QNQ A;  1GJH A;  1YSW A;  2ROC A;  2BZW A;  2W3L A;  4WMR A;  4ZIE A;  1R2I A;  2XA0 A;  3MK8 A;  1K3K A;  1YSI A;  3BL2 A;  4ZIH A;  1G5J A;  2WH6 A;  2M5B A;  4HW4 A;  3PK1 A;  2B48 A;  2IMS A;  3KJ1 A;  2K7W A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...