1LXTA

Structure of phosphotransferase phosphoglucomutase from rabbit
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
561
structure length
561
Chain Sequence
VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of rabbit muscle phosphoglucomutase refined at 2.4 A resolution.
pubmed doi rcsb
molecule keywords PHOSPHOGLUCOMUTASE (DEPHOSPHO FORM)
molecule tags Phosphotransferase
total genus 181
structure length 561
sequence length 561
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 1996-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1lxtA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1lxtA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1lxtA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1lxtA01
4HJHA 5BMNA 2DKCA 5F9CA 1P5DX 1WQAA 1KFQA 4BJUA 1PCJX 2EHPA 4IL8A 1JDYA 3NA5A 2Z0FA 3UW2A 3OLPA 4WX8A 5EPCA 2H4LX 1K35A 3RSMA 1TUOA 2F7LA 3BKQX 4MRQA 5JMVD 1C47A 3PDKA 5JN5A 1VKLA 5KL0A 2EIUA 2H5AX 2FKMX 1K2YX 1LXTA 2DKAA 1P5GX 1PCMX 3ENOC 3PMGA 4QG5A 2DKDA 2FKFA 5HSHA 1KFIA 3I3WA 1C4GA 2FUVA 3C04A 2JPIA 5BMPA 4WXAA 3ENCA 1WJWA
chains in the Genus database with same CATH superfamily
1QNCA 1NVPA 5BMNA 1M5Q1 3OSTA 3OCIA 5F9CA 3EAYA 1P5DX 1QTPA 1KFQA 2HZMA 2NOZA 2Y8LA 1UT7A 1MPGA 2EHPA 3CWTA 1QN4A 2JOIA 1M3HA 3IH7A 1T6AA 2QREA 3UW2A 3OLPA 1TUOA 2NLVA 3KRMA 5IYCP 5IYDP 2O3OA 2EHBD 2MJ7A 1K2YX 1QTSA 2Y8QA 2YH5A 5HSHA 3F0ZA 3I3WA 1C4GA 1UL7A 2NOHA 3D4VA 4EJZA 2D0BA 2JHNA 5BMPA 1B9KA 1KY7A 2LAEA 1J3MA 1VTLE 1CDWA 5AN4A 2NVMA 3I0WA 1PVSA 2V8QA 1LWWA 1VOLB 1W80A 2NOFA 3SNSA 1KYUA 3NA5A 2D0CA 2Z0FA 3RPJA 1NGMA 1NH2A 4B0AA 3OH9A 3D7QA 1K35A 3RSMA 1E42A 1V5SA 3BKQX 3DPUA 5JN5A 1VKLA 2H5AX 1XSZA 4EAKA 4D7RA 3ENOC 2QRDA 1QN8A 1KYDA 2G30A 2FKFA 1R4XA 1QNBA 1QNEA 3TDHA 3KTUA 1N39A 4TPSA 1QNAA 4WZSD 1D3UA 3CW7A 3CWSA 3HS8A 4WXAA 3OH6A 2MZ8A 4DULA 1TBPA 4HJHA 1C9BB 2VJ0A 1RM1A 3I0XA 1YTFA 4EJYA 1UT4A 3N89A 4BJUA 2ZFDB 2V9JA 2OOYA 1JDYA 4CFFA 1VOKA 1LWVA 1FN7A 1YTBA 2FGTA 1HU0A 5EPCA 4EAIA 4EALA 3CWAA 2F7LA 3TE5A 1C47A 1PZDA 3PDKA 2D0AA 2QRCA 2XHIA 1VTOA 1M3QA 1JFIC 3F10A 1DIZA 1PCZA 1LXTA 4C7PA 1QN6A 1P5GX 2NWVA 2V92A 4QG5A 2HZSA 2DKDA 2R5XA 2FUVA 1TGHA 2I5WA 1QN9A 1QN7A 3ULXA 4PY5A 5IYBP 2QR1A 3CWUA 2NOLA 2HL9A 2DKCA 3CVTA 3H1ZA 2YA3A 1YQKA 1N3CA 1WQAA 2HKPA 2IV8A 4EAJA 1WJWA 2PWWA 3T4NA 1PCJX 4EAGA 4IL8A 3OSMA 1N3AA 2NOBA 3OC3C 4Q11A 3VN5A 1QN5A 2Z8UA 4WX8A 4D7QA 2H4LX 1EUVA 2QLVA 2IV9A 1QN3A 4MRQA 5JMVD 2NOIA 3EIKA 1YQLA 1YQRA 4ROEB 3HS9A 2EIUA 5KL0A 1MP9A 2OOXA 3DPTA 1KYFA 1YQMA 1LWYA 2FKMX 3OSEA 2DKAA 2NOEA 1PCMX 3PMGA 4ROCB 1EBMA 3ASMA 1Q9UA 1TBAB 1KFIA 3OGDA 3C04A 1KY6A 2HL8A 1KO9A 4RODB 1AISA 2JPIA 4I8OA 3CVSA 3ENCA 2JHJA
chains in the Genus database with same CATH topology
4HJHA 5BMNA 2DKCA 5F9CA 1P5DX 1WQAA 1KFQA 4BJUA 1PCJX 2EHPA 4IL8A 1JDYA 3NA5A 2Z0FA 3UW2A 3OLPA 4WX8A 5EPCA 2H4LX 1K35A 3RSMA 1TUOA 2F7LA 3BKQX 4MRQA 5JMVD 1C47A 3PDKA 5JN5A 1VKLA 5KL0A 2EIUA 2H5AX 2FKMX 1K2YX 1LXTA 2DKAA 1P5GX 1PCMX 3ENOC 3PMGA 4QG5A 2DKDA 2FKFA 5HSHA 1KFIA 3I3WA 1C4GA 2FUVA 3C04A 2JPIA 5BMPA 4WXAA 3ENCA 1WJWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HJH A;  5BMN A;  2DKC A;  5F9C A;  1P5D X;  1WQA A;  1KFQ A;  4BJU A;  1PCJ X;  2EHP A;  4IL8 A;  1JDY A;  3NA5 A;  2Z0F A;  3UW2 A;  3OLP A;  4WX8 A;  5EPC A;  2H4L X;  1K35 A;  3RSM A;  1TUO A;  2F7L A;  3BKQ X;  4MRQ A;  5JMV D;  1C47 A;  3PDK A;  5JN5 A;  1VKL A;  5KL0 A;  2EIU A;  2H5A X;  2FKM X;  1K2Y X;  1LXT A;  2DKA A;  1P5G X;  1PCM X;  3ENO C;  3PMG A;  4QG5 A;  2DKD A;  2FKF A;  5HSH A;  1KFI A;  3I3W A;  1C4G A;  2FUV A;  3C04 A;  2JPI A;  5BMP A;  4WXA A;  3ENC A;  1WJW A; 
#chains in the Genus database with same CATH topology
 1QNC A;  1NVP A;  5BMN A;  1M5Q 1;  3OST A;  3OCI A;  5F9C A;  3EAY A;  1P5D X;  1QTP A;  1KFQ A;  2HZM A;  2NOZ A;  2Y8L A;  1UT7 A;  1MPG A;  2EHP A;  3CWT A;  1QN4 A;  2JOI A;  1M3H A;  3IH7 A;  1T6A A;  2QRE A;  3UW2 A;  3OLP A;  1TUO A;  2NLV A;  3KRM A;  5IYC P;  5IYD P;  2O3O A;  2EHB D;  2MJ7 A;  1K2Y X;  1QTS A;  2Y8Q A;  2YH5 A;  5HSH A;  3F0Z A;  3I3W A;  1C4G A;  1UL7 A;  2NOH A;  3D4V A;  4EJZ A;  2D0B A;  2JHN A;  5BMP A;  1B9K A;  1KY7 A;  2LAE A;  1J3M A;  1VTL E;  1CDW A;  5AN4 A;  2NVM A;  3I0W A;  1PVS A;  2V8Q A;  1LWW A;  1VOL B;  1W80 A;  2NOF A;  3SNS A;  1KYU A;  3NA5 A;  2D0C A;  2Z0F A;  3RPJ A;  1NGM A;  1NH2 A;  4B0A A;  3OH9 A;  3D7Q A;  1K35 A;  3RSM A;  1E42 A;  1V5S A;  3BKQ X;  3DPU A;  5JN5 A;  1VKL A;  2H5A X;  1XSZ A;  4EAK A;  4D7R A;  3ENO C;  2QRD A;  1QN8 A;  1KYD A;  2G30 A;  2FKF A;  1R4X A;  1QNB A;  1QNE A;  3TDH A;  3KTU A;  1N39 A;  4TPS A;  1QNA A;  4WZS D;  1D3U A;  3CW7 A;  3CWS A;  3HS8 A;  4WXA A;  3OH6 A;  2MZ8 A;  4DUL A;  1TBP A;  4HJH A;  1C9B B;  2VJ0 A;  1RM1 A;  3I0X A;  1YTF A;  4EJY A;  1UT4 A;  3N89 A;  4BJU A;  2ZFD B;  2V9J A;  2OOY A;  1JDY A;  4CFF A;  1VOK A;  1LWV A;  1FN7 A;  1YTB A;  2FGT A;  1HU0 A;  5EPC A;  4EAI A;  4EAL A;  3CWA A;  2F7L A;  3TE5 A;  1C47 A;  1PZD A;  3PDK A;  2D0A A;  2QRC A;  2XHI A;  1VTO A;  1M3Q A;  1JFI C;  3F10 A;  1DIZ A;  1PCZ A;  1LXT A;  4C7P A;  1QN6 A;  1P5G X;  2NWV A;  2V92 A;  4QG5 A;  2HZS A;  2DKD A;  2R5X A;  2FUV A;  1TGH A;  2I5W A;  1QN9 A;  1QN7 A;  3ULX A;  4PY5 A;  5IYB P;  2QR1 A;  3CWU A;  2NOL A;  2HL9 A;  2DKC A;  3CVT A;  3H1Z A;  2YA3 A;  1YQK A;  1N3C A;  1WQA A;  2HKP A;  2IV8 A;  4EAJ A;  1WJW A;  2PWW A;  3T4N A;  1PCJ X;  4EAG A;  4IL8 A;  3OSM A;  1N3A A;  2NOB A;  3OC3 C;  4Q11 A;  3VN5 A;  1QN5 A;  2Z8U A;  4WX8 A;  4D7Q A;  2H4L X;  1EUV A;  2QLV A;  2IV9 A;  1QN3 A;  4MRQ A;  5JMV D;  2NOI A;  3EIK A;  1YQL A;  1YQR A;  4ROE B;  3HS9 A;  2EIU A;  5KL0 A;  1MP9 A;  2OOX A;  3DPT A;  1KYF A;  1YQM A;  1LWY A;  2FKM X;  3OSE A;  2DKA A;  2NOE A;  1PCM X;  3PMG A;  4ROC B;  1EBM A;  3ASM A;  1Q9U A;  1TBA B;  1KFI A;  3OGD A;  3C04 A;  1KY6 A;  2HL8 A;  1KO9 A;  4ROD B;  1AIS A;  2JPI A;  4I8O A;  3CVS A;  3ENC A;  2JHJ A; 
#chains in the Genus database with same CATH homology
 4HJH A;  5BMN A;  2DKC A;  5F9C A;  1P5D X;  1WQA A;  1KFQ A;  4BJU A;  1PCJ X;  2EHP A;  4IL8 A;  1JDY A;  3NA5 A;  2Z0F A;  3UW2 A;  3OLP A;  4WX8 A;  5EPC A;  2H4L X;  1K35 A;  3RSM A;  1TUO A;  2F7L A;  3BKQ X;  4MRQ A;  5JMV D;  1C47 A;  3PDK A;  5JN5 A;  1VKL A;  5KL0 A;  2EIU A;  2H5A X;  2FKM X;  1K2Y X;  1LXT A;  2DKA A;  1P5G X;  1PCM X;  3ENO C;  3PMG A;  4QG5 A;  2DKD A;  2FKF A;  5HSH A;  1KFI A;  3I3W A;  1C4G A;  2FUV A;  3C04 A;  2JPI A;  5BMP A;  4WXA A;  3ENC A;  1WJW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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