1M0IA

Crystal structure of bacteriophage t7 endonuclease i with a wild-type active site
Total Genus 33
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
129
structure length
129
Chain Sequence
SGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLLPNGIFVETKGLWESDDRKKHLLIREQHPELDIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIPAEWIKEPKKEVPFDRLKRK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords endodeoxyribonuclease I
publication title Metal ions bound at the active site of the junction-resolving enzyme T7 endonuclease I
pubmed doi rcsb
source organism Enterobacteria phage t7
total genus 33
structure length 129
sequence length 129
chains with identical sequence B, C, D
ec nomenclature ec 3.1.21.2: Deoxyribonuclease IV.
pdb deposition date 2002-06-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.30 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 1m0iA00
3CAEA 2FOKA 1M0IA 1M0DA 1FOKA 2PFJA 1FZRA
chains in the Genus database with same CATH superfamily
4AWHA 4CGSA 4AWFA 4CGXA 1SDOA 3MQ6A 1M0DA 2P0JA 5DESA 5JHTA 5JHVA 4E5LA 4YYLA 2FOKA 4AVLA 3A4KA 4E5IA 5I13A 1DFMA 1KNVA 4E5GA 3V21A 3WVGA 3N7BA 4AWKA 4F0PA 4E5JA 1ESGA 4CHCA 2E52A 1VRRA 1M0IA 3MQYA 1DC1A 3BAMA 4ZI0A 3BM3A 5D4GA 4E5HA 5DEBA 3N78A 1CFRA 5D9JA 2BAMA 3DVOA 4ZQQA 1ES8A 4AVGA 3DPGA 1BHMA 2PFJA 1FZRA 4NFZA 4E5EA 2EWFA 5D8UA 2XI5A 2XI7A 3V1ZA 5D2OA 2P14A 5CL0A 4ZHZA 5CZNA 3HW5A 5CCYA 3HW4A 3ODHA 3CAEA 4F0QA 5FDGA 4OC8A 5EGAA 4AWMA 4AWGA 3EBJA 5D42A 3HW3A 5FDDA 3WVIA 3WVPA 2FQZA 5DBSA 1BAMA 4AVQA 3V20A 5CGVA 4E5FA 3DW9A 3WVHA 1D2IA 3WVKA 3HW6A 1FOKA 4R28A 2GB7A
chains in the Genus database with same CATH topology
4AWHA 4CGSA 4AWFA 4CGXA 1SDOA 3MQ6A 1M0DA 2P0JA 5DESA 5JHTA 5JHVA 4E5LA 4YYLA 2FOKA 4AVLA 3A4KA 4E5IA 5I13A 1DFMA 1KNVA 4E5GA 3V21A 3WVGA 3N7BA 4AWKA 4F0PA 4E5JA 1ESGA 4CHCA 2E52A 1VRRA 1M0IA 3MQYA 1DC1A 3BAMA 4ZI0A 3BM3A 5D4GA 4E5HA 5DEBA 3N78A 1CFRA 5D9JA 2BAMA 3DVOA 4ZQQA 1ES8A 4AVGA 3DPGA 1BHMA 2PFJA 1FZRA 4NFZA 4E5EA 2EWFA 5D8UA 2XI5A 2XI7A 3V1ZA 5D2OA 2P14A 5CL0A 4ZHZA 5CZNA 3HW5A 5CCYA 3HW4A 3ODHA 3CAEA 4F0QA 5FDGA 4OC8A 5EGAA 4AWMA 4AWGA 3EBJA 5D42A 3HW3A 5FDDA 3WVIA 3WVPA 2FQZA 5DBSA 1BAMA 4AVQA 3V20A 5CGVA 4E5FA 3DW9A 3WVHA 1D2IA 3WVKA 3HW6A 1FOKA 4R28A 2GB7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CAE A;  2FOK A;  1M0I A;  1M0D A;  1FOK A;  2PFJ A;  1FZR A; 
#chains in the Genus database with same CATH topology
 4AWH A;  4CGS A;  4AWF A;  4CGX A;  1SDO A;  3MQ6 A;  1M0D A;  2P0J A;  5DES A;  5JHT A;  5JHV A;  4E5L A;  4YYL A;  2FOK A;  4AVL A;  3A4K A;  4E5I A;  5I13 A;  1DFM A;  1KNV A;  4E5G A;  3V21 A;  3WVG A;  3N7B A;  4AWK A;  4F0P A;  4E5J A;  1ESG A;  4CHC A;  2E52 A;  1VRR A;  1M0I A;  3MQY A;  1DC1 A;  3BAM A;  4ZI0 A;  3BM3 A;  5D4G A;  4E5H A;  5DEB A;  3N78 A;  1CFR A;  5D9J A;  2BAM A;  3DVO A;  4ZQQ A;  1ES8 A;  4AVG A;  3DPG A;  1BHM A;  2PFJ A;  1FZR A;  4NFZ A;  4E5E A;  2EWF A;  5D8U A;  2XI5 A;  2XI7 A;  3V1Z A;  5D2O A;  2P14 A;  5CL0 A;  4ZHZ A;  5CZN A;  3HW5 A;  5CCY A;  3HW4 A;  3ODH A;  3CAE A;  4F0Q A;  5FDG A;  4OC8 A;  5EGA A;  4AWM A;  4AWG A;  3EBJ A;  5D42 A;  3HW3 A;  5FDD A;  3WVI A;  3WVP A;  2FQZ A;  5DBS A;  1BAM A;  4AVQ A;  3V20 A;  5CGV A;  4E5F A;  3DW9 A;  3WVH A;  1D2I A;  3WVK A;  3HW6 A;  1FOK A;  4R28 A;  2GB7 A; 
#chains in the Genus database with same CATH homology
 4AWH A;  4CGS A;  4AWF A;  4CGX A;  1SDO A;  3MQ6 A;  1M0D A;  2P0J A;  5DES A;  5JHT A;  5JHV A;  4E5L A;  4YYL A;  2FOK A;  4AVL A;  3A4K A;  4E5I A;  5I13 A;  1DFM A;  1KNV A;  4E5G A;  3V21 A;  3WVG A;  3N7B A;  4AWK A;  4F0P A;  4E5J A;  1ESG A;  4CHC A;  2E52 A;  1VRR A;  1M0I A;  3MQY A;  1DC1 A;  3BAM A;  4ZI0 A;  3BM3 A;  5D4G A;  4E5H A;  5DEB A;  3N78 A;  1CFR A;  5D9J A;  2BAM A;  3DVO A;  4ZQQ A;  1ES8 A;  4AVG A;  3DPG A;  1BHM A;  2PFJ A;  1FZR A;  4NFZ A;  4E5E A;  2EWF A;  5D8U A;  2XI5 A;  2XI7 A;  3V1Z A;  5D2O A;  2P14 A;  5CL0 A;  4ZHZ A;  5CZN A;  3HW5 A;  5CCY A;  3HW4 A;  3ODH A;  3CAE A;  4F0Q A;  5FDG A;  4OC8 A;  5EGA A;  4AWM A;  4AWG A;  3EBJ A;  5D42 A;  3HW3 A;  5FDD A;  3WVI A;  3WVP A;  2FQZ A;  5DBS A;  1BAM A;  4AVQ A;  3V20 A;  5CGV A;  4E5F A;  3DW9 A;  3WVH A;  1D2I A;  3WVK A;  3HW6 A;  1FOK A;  4R28 A;  2GB7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...