1M1KJ

Co-crystal structure of azithromycin bound to the 50s ribosomal subunit of haloarcula marismortui
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
167
structure length
156
Chain Sequence
KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKDGMRAPFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPAGNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title The structures of four macrolide antibiotics bound to the large ribosomal subunit.
pubmed doi rcsb
total genus 27
structure length 156
sequence length 167
ec nomenclature
pdb deposition date 2002-06-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1m1kJ00
3G6EH 1S72H 1VQ4H 4WF9J 5AN9F 4WFAJ 1Y69K 1YHQH 1VQLH 4U67J 3CMAH 5HL7J 1VQ7H 1YJ9H 1KC8J 1VQPH 2ZJQJ 1Q81J 1VQ5H 1M90J 1VQOH 1Q7YJ 3CCSH 4WCEJ 3CC4H 1Q86J 4WFBJ 1VQNH 1KQSH 5GAGN 5GAEN 3CC7H 4UY8M 1W2BH 3PIOJ 3CMEH 3CCLH 1N8RJ 1VQKH 1QVFH 1VQ8H 2ZJRJ 5DM6J 3G71H 3CCQH 1YJNH 1YIJH 4WFNJ 2OTJH 5DM7J 3J7ZM 4IOAJ 4IO9J 2ZJPJ 1VQMH 3CCEH 1Q82J 3I56H 2PA2A 3CCRH 1WKIA 5JVGJ 5GAHN 3CCJH 2QEXH 3CPWH 3I55H 1VQ9H 1VQ6H 3PIPJ 1M1KJ 3CCVH 3G4SH 3CXCH 5JVHJ 1YITH 1JJ2H 2OTLH 3CC2H 3DLLJ 3CD6H 3CCMH 1K8AJ 5H1SO 5GADN 1YJWH 1K73J 2QA4H 1QVGH 1KD1J 3CF5J 1K9MJ 1NJIJ 4IOCJ 3OW2H 1YI2H 5MLCO 3CCUH
chains in the Genus database with same CATH superfamily
3FAHA 3NVVC 3VMMA 3G6EH 1S72H 1VQ4H 2B7QA 1SB3A 3RPFA 4C7ZA 4WF9J 5AN9F 1FIQC 4WFAJ 1V97A 4KWWA 1Y69K 1X1OA 1YHQH 1VQLH 4U67J 3CMAH 1VLBA 2OMDA 3SR6C 2QIEA 4LHMA 5HL7J 1VQ7H 1YJ9H 3NVZC 2B7NA 5MPOC 2JBMA 5HULA 4YEKA 1NVIE 1KC8J 4YYYA 4US8A 1BRWA 1N5XA 1O4UA 1VQPH 3AM9A 5AYZA 2ZJQJ 1Q81J 1VQ5H 1M90J 1VQOH 2I1OA 1Q7YJ 3CCSH 3C2OA 4GA4A 3WO0A 4WCEJ 5HUPA 1FMAE 1NVJA 2W3RB 3CC4H 1Q86J 2W54B 4WFBJ 1N5WB 1VQNH 1FM0E 4GA5A 4ZOHA 1KQSH 2TPTA 5GAGN 5GAEN 4AP8A 3CC7H 1RM6A 2E3TA 4I9AA 4UY8M 1W2BH 3C2EA 1VDVA 3PIOJ 3CMEH 3H5QA 1QPRA 3CCLH 1N8RJ 1VQKH 5EP8A 1JRPB 1OTPA 3C2RA 4KWVA 1QVFH 4EAFA 1VQ8H 1N62B 5DM6J 1QPNA 3G71H 3BIIE 1N63B 2ZJRJ 5EY3A 3GNNA 2WP4A 1ZXIB 3PAJA 5AYXA 1QPQA 3CCQH 1YJNH 3NRZC 3ETRC 1YIJH 3TQVA 1YI2H 2W55B 4WFNJ 2OTJH 1FO4A 5DM7J 3J7ZM 1YTEA 3L0GA 3WO1A 4IOAJ 3L4PA 4IO9J 2DSJA 2I14A 2ZJPJ 1VQMH 3C2FA 3CCEH 2Q5WE 1Q82J 1YTDA 3I56H 2PA2A 3CCRH 1WYGA 1WKIA 5JVGJ 5GAHN 5AYYA 3NS1C 3CCJH 4C80A 2QEXH 1DGJA 1SIJA 4C7YA 3CPWH 3NVYC 3I55H 1VQ9H 1VQ6H 3FC4A 3PIPJ 1M1KJ 3AMZA 4US9A 4X46A 1QPOA 3CCVH 1YTKA 1FFVB 3G4SH 3CXCH 5JVHJ 4GA6A 1YITH 1JJ2H 2OTLH 3CC2H 3DLLJ 3CD6H 3CCMH 1K8AJ 5H1SO 5GADN 1N60B 1YJWH 4EADA 1K73J 4USAA 2J0FA 1JROB 1N61B 1UOUA 2WK5A 2QA4H 3C2VA 4XR5A 1QVGH 1KD1J 3CF5J 1AZYA 3AN1A 1K9MJ 1FFUB 2WK6A 1NJIJ 5HUOA 2B7PA 4IOCJ 2W3SB 3WNZA 3B9JC 3OW2H 3EUB4 3NVWC 5MLCO 3CCUH 1QAPA
chains in the Genus database with same CATH topology
3G6EH 1S72H 1VQ4H 4WF9J 5AN9F 4WFAJ 1Y69K 1YHQH 1VQLH 4U67J 3CMAH 5HL7J 1VQ7H 1YJ9H 1KC8J 1VQPH 2ZJQJ 1Q81J 1VQ5H 1M90J 1VQOH 1Q7YJ 3CCSH 4WCEJ 3CC4H 1Q86J 4WFBJ 1VQNH 1KQSH 5GAGN 5GAEN 3CC7H 4UY8M 1W2BH 3PIOJ 3CMEH 3CCLH 1N8RJ 1VQKH 1QVFH 1VQ8H 2ZJRJ 5DM6J 3G71H 3CCQH 1YJNH 1YIJH 4WFNJ 2OTJH 5DM7J 3J7ZM 4IOAJ 4IO9J 2ZJPJ 1VQMH 3CCEH 1Q82J 3I56H 2PA2A 3CCRH 1WKIA 5JVGJ 5GAHN 3CCJH 2QEXH 3CPWH 3I55H 1VQ9H 1VQ6H 3PIPJ 1M1KJ 3CCVH 3G4SH 3CXCH 5JVHJ 1YITH 1JJ2H 2OTLH 3CC2H 3DLLJ 3CD6H 3CCMH 1K8AJ 5H1SO 5GADN 1YJWH 1K73J 2QA4H 1QVGH 1KD1J 3CF5J 1K9MJ 1NJIJ 4IOCJ 3OW2H 1YI2H 5MLCO 3CCUH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G6E H;  1S72 H;  1VQ4 H;  4WF9 J;  5AN9 F;  4WFA J;  1Y69 K;  1YHQ H;  1VQL H;  4U67 J;  3CMA H;  5HL7 J;  1VQ7 H;  1YJ9 H;  1KC8 J;  1VQP H;  2ZJQ J;  1Q81 J;  1VQ5 H;  1M90 J;  1VQO H;  1Q7Y J;  3CCS H;  4WCE J;  3CC4 H;  1Q86 J;  4WFB J;  1VQN H;  1KQS H;  5GAG N;  5GAE N;  3CC7 H;  4UY8 M;  1W2B H;  3PIO J;  3CME H;  3CCL H;  1N8R J;  1VQK H;  1QVF H;  1VQ8 H;  2ZJR J;  5DM6 J;  3G71 H;  3CCQ H;  1YJN H;  1YIJ H;  4WFN J;  2OTJ H;  5DM7 J;  3J7Z M;  4IOA J;  4IO9 J;  2ZJP J;  1VQM H;  3CCE H;  1Q82 J;  3I56 H;  2PA2 A;  3CCR H;  1WKI A;  5JVG J;  5GAH N;  3CCJ H;  2QEX H;  3CPW H;  3I55 H;  1VQ9 H;  1VQ6 H;  3PIP J;  1M1K J;  3CCV H;  3G4S H;  3CXC H;  5JVH J;  1YIT H;  1JJ2 H;  2OTL H;  3CC2 H;  3DLL J;  3CD6 H;  3CCM H;  1K8A J;  5H1S O;  5GAD N;  1YJW H;  1K73 J;  2QA4 H;  1QVG H;  1KD1 J;  3CF5 J;  1K9M J;  1NJI J;  4IOC J;  3OW2 H;  1YI2 H;  5MLC O;  3CCU H; 
#chains in the Genus database with same CATH topology
 3FAH A;  3NVV C;  3VMM A;  3G6E H;  1S72 H;  1VQ4 H;  2B7Q A;  1SB3 A;  3RPF A;  4C7Z A;  4WF9 J;  5AN9 F;  1FIQ C;  4WFA J;  1V97 A;  4KWW A;  1Y69 K;  1X1O A;  1YHQ H;  1VQL H;  4U67 J;  3CMA H;  1VLB A;  2OMD A;  3SR6 C;  2QIE A;  4LHM A;  5HL7 J;  1VQ7 H;  1YJ9 H;  3NVZ C;  2B7N A;  5MPO C;  2JBM A;  5HUL A;  4YEK A;  1NVI E;  1KC8 J;  4YYY A;  4US8 A;  1BRW A;  1N5X A;  1O4U A;  1VQP H;  3AM9 A;  5AYZ A;  2ZJQ J;  1Q81 J;  1VQ5 H;  1M90 J;  1VQO H;  2I1O A;  1Q7Y J;  3CCS H;  3C2O A;  4GA4 A;  3WO0 A;  4WCE J;  5HUP A;  1FMA E;  1NVJ A;  2W3R B;  3CC4 H;  1Q86 J;  2W54 B;  4WFB J;  1N5W B;  1VQN H;  1FM0 E;  4GA5 A;  4ZOH A;  1KQS H;  2TPT A;  5GAG N;  5GAE N;  4AP8 A;  3CC7 H;  1RM6 A;  2E3T A;  4I9A A;  4UY8 M;  1W2B H;  3C2E A;  1VDV A;  3PIO J;  3CME H;  3H5Q A;  1QPR A;  3CCL H;  1N8R J;  1VQK H;  5EP8 A;  1JRP B;  1OTP A;  3C2R A;  4KWV A;  1QVF H;  4EAF A;  1VQ8 H;  1N62 B;  5DM6 J;  1QPN A;  3G71 H;  3BII E;  1N63 B;  2ZJR J;  5EY3 A;  3GNN A;  2WP4 A;  1ZXI B;  3PAJ A;  5AYX A;  1QPQ A;  3CCQ H;  1YJN H;  3NRZ C;  3ETR C;  1YIJ H;  3TQV A;  1YI2 H;  2W55 B;  4WFN J;  2OTJ H;  1FO4 A;  5DM7 J;  3J7Z M;  1YTE A;  3L0G A;  3WO1 A;  4IOA J;  3L4P A;  4IO9 J;  2DSJ A;  2I14 A;  2ZJP J;  1VQM H;  3C2F A;  3CCE H;  2Q5W E;  1Q82 J;  1YTD A;  3I56 H;  2PA2 A;  3CCR H;  1WYG A;  1WKI A;  5JVG J;  5GAH N;  5AYY A;  3NS1 C;  3CCJ H;  4C80 A;  2QEX H;  1DGJ A;  1SIJ A;  4C7Y A;  3CPW H;  3NVY C;  3I55 H;  1VQ9 H;  1VQ6 H;  3FC4 A;  3PIP J;  1M1K J;  3AMZ A;  4US9 A;  4X46 A;  1QPO A;  3CCV H;  1YTK A;  1FFV B;  3G4S H;  3CXC H;  5JVH J;  4GA6 A;  1YIT H;  1JJ2 H;  2OTL H;  3CC2 H;  3DLL J;  3CD6 H;  3CCM H;  1K8A J;  5H1S O;  5GAD N;  1N60 B;  1YJW H;  4EAD A;  1K73 J;  4USA A;  2J0F A;  1JRO B;  1N61 B;  1UOU A;  2WK5 A;  2QA4 H;  3C2V A;  4XR5 A;  1QVG H;  1KD1 J;  3CF5 J;  1AZY A;  3AN1 A;  1K9M J;  1FFU B;  2WK6 A;  1NJI J;  5HUO A;  2B7P A;  4IOC J;  2W3S B;  3WNZ A;  3B9J C;  3OW2 H;  3EUB 4;  3NVW C;  5MLC O;  3CCU H;  1QAP A; 
#chains in the Genus database with same CATH homology
 3G6E H;  1S72 H;  1VQ4 H;  4WF9 J;  5AN9 F;  4WFA J;  1Y69 K;  1YHQ H;  1VQL H;  4U67 J;  3CMA H;  5HL7 J;  1VQ7 H;  1YJ9 H;  1KC8 J;  1VQP H;  2ZJQ J;  1Q81 J;  1VQ5 H;  1M90 J;  1VQO H;  1Q7Y J;  3CCS H;  4WCE J;  3CC4 H;  1Q86 J;  4WFB J;  1VQN H;  1KQS H;  5GAG N;  5GAE N;  3CC7 H;  4UY8 M;  1W2B H;  3PIO J;  3CME H;  3CCL H;  1N8R J;  1VQK H;  1QVF H;  1VQ8 H;  2ZJR J;  5DM6 J;  3G71 H;  3CCQ H;  1YJN H;  1YIJ H;  4WFN J;  2OTJ H;  5DM7 J;  3J7Z M;  4IOA J;  4IO9 J;  2ZJP J;  1VQM H;  3CCE H;  1Q82 J;  3I56 H;  2PA2 A;  3CCR H;  1WKI A;  5JVG J;  5GAH N;  3CCJ H;  2QEX H;  3CPW H;  3I55 H;  1VQ9 H;  1VQ6 H;  3PIP J;  1M1K J;  3CCV H;  3G4S H;  3CXC H;  5JVH J;  1YIT H;  1JJ2 H;  2OTL H;  3CC2 H;  3DLL J;  3CD6 H;  3CCM H;  1K8A J;  5H1S O;  5GAD N;  1YJW H;  1K73 J;  2QA4 H;  1QVG H;  1KD1 J;  3CF5 J;  1K9M J;  1NJI J;  4IOC J;  3OW2 H;  1YI2 H;  5MLC O;  3CCU H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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