1M1KX

Co-crystal structure of azithromycin bound to the 50s ribosomal subunit of haloarcula marismortui
Total Genus 47
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The structures of four macrolide antibiotics bound to the large ribosomal subunit.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S RRNA
total genus 47
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2002-06-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 1m1kX02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 1m1kX01
3CCEW 4IO9W 1BXYA 2OTJW 4U67W 4IOCW 1QVFV 2QA4W 5GAEa 3I55W 3CCLW 5JVGW 3CCSW 3CC2W 1YIJW 3OW2V 3PIPW 1VQMW 4WCEW 3CCMW 1KC8X 1QVGV 1K73X 5GADa 2OTLW 3J7ZZ 3CMAW 1KD1X 1M1KX 1YITW 2QEXW 3CCJW 3G4SW 1VQPW 1VQKW 3CF5W 4WFBW 3CD6W 1VQ6W 1Q86X 1Q81X 1YI2W 3DLLW 1YJ9W 1K8AX 4IOAW 1K9MX 1YJWW 3CMEW 5GAHa 3CXCV 5GAGa 5DM6W 3CCRW 3CCUW 3I56W 2ZJPW 4UY8Z 1M90X 1YHQW 2ZJQW 3CCVW 1Q7YX 1Q82X 3CCQW 1VQ8W 1VQNW 2ZJRW 4WFNW 1KQSV 5DM7W 3PIOW 3CPWV 3CC7W 1NJIX 1VQOW 5JVHW 3CC4W 1VQ7W 1VQ5W 1VQ4W 1S72W 1VQLW 1JJ2V 4WF9W 1YJNW 4WFAW 1W2BV 5HL7W 1VQ9W 1N8RX 3G6EW 3G71W
chains in the Genus database with same CATH superfamily
1CTFA 3CCEW 3DNJA 4YJMA 1RQVA 4IO9W 1MBUC 4DKIA 1BXYA 2OTJW 4U67W 1R6OC 4IOCW 3W7UA 1QVFV 1VQQA 2QA4W 5GAEa 1MWTA 3I55W 3CCLW 5JVGW 3CCSW 3CC2W 3W7XA 1YIJW 3OW2V 3PIPW 3ZG5A 1VQMW 4WCEW 3CCMW 1KC8X 1QVGV 1K73X 5GADa 2OTLW 3J7ZZ 3CMAW 3GQ1A 4BL2A 3D3IA 1KD1X 1M1KX 1MBXC 1YITW 2QEXW 1MBVB 3CCJW 3G4SW 1VQPW 1VQKW 5M19A 3CF5W 1MWRA 3ZFZA 4C1NA 4WFBW 3CD6W 1VQ6W 3ZG0A 5M18A 4CJNA 1Q86X 1Q81X 3W7TA 5M1AA 1YI2W 1MWSA 3DLLW 1YJ9W 1R6QC 1K8AX 4YKAA 4IOAW 1K9MX 1LZWA 3G1BA 3O2HA 1YJWW 4YJXA 3CMEW 5GAHa 3CXCV 5GAGa 1DD4A 1RQUA 5DM6W 3GQ0A 1MWUA 3O1FB 3O2BA 3CCRW 3CCUW 3I56W 1RQSA 2ZJPW 4UY8Z 1M90X 1YHQW 2ZJQW 3CCVW 1Q7YX 1Q82X 3CCQW 1VQ8W 2WA8A 1VQNW 5GW7A 2ZJRW 2W9RA 3G3PA 4WFNW 3GW1A 3G19A 1KQSV 5DM7W 3PIOW 3CPWV 3CC7W 1NJIX 3O2OA 1VQOW 5JVHW 2WA9A 3O1FA 3CC4W 1VQ7W 1VQ5W 5CA3A 4CPKA 1VQ4W 1S72W 1VQLW 1JJ2V 4WF9W 1YJNW 4WFAW 4BL3A 1W2BV 3W7WA 5HL7W 3W7SA 1MG9A 1VQ9W 1N8RX 1DD3A 3G6EW 3G71W
chains in the Genus database with same CATH topology
3CCEW 4IO9W 1BXYA 2OTJW 4U67W 4IOCW 1QVFV 2QA4W 5GAEa 3I55W 3CCLW 5JVGW 3CCSW 3CC2W 1YIJW 3OW2V 3PIPW 1VQMW 4WCEW 3CCMW 1KC8X 1QVGV 1K73X 5GADa 2OTLW 3J7ZZ 3CMAW 1KD1X 1M1KX 1YITW 2QEXW 3CCJW 3G4SW 1VQPW 1VQKW 3CF5W 4C1NA 4WFBW 3CD6W 1VQ6W 1Q86X 1Q81X 1YI2W 3DLLW 1YJ9W 1K8AX 4IOAW 1K9MX 1YJWW 3CMEW 5GAHa 3CXCV 5GAGa 5DM6W 3CCRW 3CCUW 3I56W 2ZJPW 4UY8Z 1M90X 1YHQW 2ZJQW 3CCVW 1Q7YX 1Q82X 3CCQW 1VQ8W 1VQNW 2ZJRW 4WFNW 1KQSV 5DM7W 3PIOW 3CPWV 3CC7W 1NJIX 1VQOW 5JVHW 3CC4W 1VQ7W 1VQ5W 1VQ4W 1S72W 1VQLW 1JJ2V 4WF9W 1YJNW 4WFAW 1W2BV 5HL7W 1VQ9W 1N8RX 3G6EW 3G71W
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCE W;  4IO9 W;  1BXY A;  2OTJ W;  4U67 W;  4IOC W;  1QVF V;  2QA4 W;  5GAE a;  3I55 W;  3CCL W;  5JVG W;  3CCS W;  3CC2 W;  1YIJ W;  3OW2 V;  3PIP W;  1VQM W;  4WCE W;  3CCM W;  1KC8 X;  1QVG V;  1K73 X;  5GAD a;  2OTL W;  3J7Z Z;  3CMA W;  1KD1 X;  1M1K X;  1YIT W;  2QEX W;  3CCJ W;  3G4S W;  1VQP W;  1VQK W;  3CF5 W;  4WFB W;  3CD6 W;  1VQ6 W;  1Q86 X;  1Q81 X;  1YI2 W;  3DLL W;  1YJ9 W;  1K8A X;  4IOA W;  1K9M X;  1YJW W;  3CME W;  5GAH a;  3CXC V;  5GAG a;  5DM6 W;  3CCR W;  3CCU W;  3I56 W;  2ZJP W;  4UY8 Z;  1M90 X;  1YHQ W;  2ZJQ W;  3CCV W;  1Q7Y X;  1Q82 X;  3CCQ W;  1VQ8 W;  1VQN W;  2ZJR W;  4WFN W;  1KQS V;  5DM7 W;  3PIO W;  3CPW V;  3CC7 W;  1NJI X;  1VQO W;  5JVH W;  3CC4 W;  1VQ7 W;  1VQ5 W;  1VQ4 W;  1S72 W;  1VQL W;  1JJ2 V;  4WF9 W;  1YJN W;  4WFA W;  1W2B V;  5HL7 W;  1VQ9 W;  1N8R X;  3G6E W;  3G71 W; 
#chains in the Genus database with same CATH topology
 1CTF A;  3CCE W;  3DNJ A;  4YJM A;  1RQV A;  4IO9 W;  1MBU C;  4DKI A;  1BXY A;  2OTJ W;  4U67 W;  1R6O C;  4IOC W;  3W7U A;  1QVF V;  1VQQ A;  2QA4 W;  5GAE a;  1MWT A;  3I55 W;  3CCL W;  5JVG W;  3CCS W;  3CC2 W;  3W7X A;  1YIJ W;  3OW2 V;  3PIP W;  3ZG5 A;  1VQM W;  4WCE W;  3CCM W;  1KC8 X;  1QVG V;  1K73 X;  5GAD a;  2OTL W;  3J7Z Z;  3CMA W;  3GQ1 A;  4BL2 A;  3D3I A;  1KD1 X;  1M1K X;  1MBX C;  1YIT W;  2QEX W;  1MBV B;  3CCJ W;  3G4S W;  1VQP W;  1VQK W;  5M19 A;  3CF5 W;  1MWR A;  3ZFZ A;  4C1N A;  4WFB W;  3CD6 W;  1VQ6 W;  3ZG0 A;  5M18 A;  4CJN A;  1Q86 X;  1Q81 X;  3W7T A;  5M1A A;  1YI2 W;  1MWS A;  3DLL W;  1YJ9 W;  1R6Q C;  1K8A X;  4YKA A;  4IOA W;  1K9M X;  1LZW A;  3G1B A;  3O2H A;  1YJW W;  4YJX A;  3CME W;  5GAH a;  3CXC V;  5GAG a;  1DD4 A;  1RQU A;  5DM6 W;  3GQ0 A;  1MWU A;  3O1F B;  3O2B A;  3CCR W;  3CCU W;  3I56 W;  1RQS A;  2ZJP W;  4UY8 Z;  1M90 X;  1YHQ W;  2ZJQ W;  3CCV W;  1Q7Y X;  1Q82 X;  3CCQ W;  1VQ8 W;  2WA8 A;  1VQN W;  5GW7 A;  2ZJR W;  2W9R A;  3G3P A;  4WFN W;  3GW1 A;  3G19 A;  1KQS V;  5DM7 W;  3PIO W;  3CPW V;  3CC7 W;  1NJI X;  3O2O A;  1VQO W;  5JVH W;  2WA9 A;  3O1F A;  3CC4 W;  1VQ7 W;  1VQ5 W;  5CA3 A;  4CPK A;  1VQ4 W;  1S72 W;  1VQL W;  1JJ2 V;  4WF9 W;  1YJN W;  4WFA W;  4BL3 A;  1W2B V;  3W7W A;  5HL7 W;  3W7S A;  1MG9 A;  1VQ9 W;  1N8R X;  1DD3 A;  3G6E W;  3G71 W; 
#chains in the Genus database with same CATH homology
 3CCE W;  4IO9 W;  1BXY A;  2OTJ W;  4U67 W;  4IOC W;  1QVF V;  2QA4 W;  5GAE a;  3I55 W;  3CCL W;  5JVG W;  3CCS W;  3CC2 W;  1YIJ W;  3OW2 V;  3PIP W;  1VQM W;  4WCE W;  3CCM W;  1KC8 X;  1QVG V;  1K73 X;  5GAD a;  2OTL W;  3J7Z Z;  3CMA W;  1KD1 X;  1M1K X;  1YIT W;  2QEX W;  3CCJ W;  3G4S W;  1VQP W;  1VQK W;  3CF5 W;  4C1N A;  4WFB W;  3CD6 W;  1VQ6 W;  1Q86 X;  1Q81 X;  1YI2 W;  3DLL W;  1YJ9 W;  1K8A X;  4IOA W;  1K9M X;  1YJW W;  3CME W;  5GAH a;  3CXC V;  5GAG a;  5DM6 W;  3CCR W;  3CCU W;  3I56 W;  2ZJP W;  4UY8 Z;  1M90 X;  1YHQ W;  2ZJQ W;  3CCV W;  1Q7Y X;  1Q82 X;  3CCQ W;  1VQ8 W;  1VQN W;  2ZJR W;  4WFN W;  1KQS V;  5DM7 W;  3PIO W;  3CPW V;  3CC7 W;  1NJI X;  1VQO W;  5JVH W;  3CC4 W;  1VQ7 W;  1VQ5 W;  1VQ4 W;  1S72 W;  1VQL W;  1JJ2 V;  4WF9 W;  1YJN W;  4WFA W;  1W2B V;  5HL7 W;  1VQ9 W;  1N8R X;  3G6E W;  3G71 W; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...