1M1PA

P21 crystal structure of the tetraheme cytochrome c3 from shewanella oneidensis mr1
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
87
structure length
87
Chain Sequence
QKLSDFHAESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTSASVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Small tetraheme cytochrome c
publication title Crystal structures at atomic resolution reveal the novel concept of 'electron-harvesting' as a role for the small tetraheme cytochrome c
pubmed doi rcsb
total genus 20
structure length 87
sequence length 87
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2002-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14537 Cytochrom_c3_2 Cytochrome c3
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.10 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A 1m1pA00
2K3VA 1GU6A 1QO8A 1D4CA 3D1IA 1SP3A 2RDZA 4Q5CA 2E80A 3BNJA 2RF7A 4Q1OA 3UBRA 3TORA 1FT5A 1BVBA 1P2HA 4Q0TA 1OAHA 1JNIA 3L1TA 1P2EA 2B7RA 4Q17A 2OT4A 4L3YA 4Q4UA 1M1PA 1LJ1A 3LG1A 2J7AA 1KSSA 1JRZA 1Q9IA 1M64A 2B7SA 2VR0A 3LGQA 1FS9A 3MMOA 1FS8A 4L3XA 4WJYA 3F29A 1M1RA 1E39A 4L3ZA 1FT6A 3SCEA 1Y0PA 3FO3A 2ZO5A 1D4EA 3GM6A 1JRYA 3OWMA 3RKHA 3TTBA 3UU9A 1FS7A 3S7WA 3BNHA 1D4DA 1QJDA 1JRXA 1KSUA 3BNGA 2E81A 3BNFA 4L38A 3SXQA 1QDBA 4Q5BA 1M1QA
chains in the Genus database with same CATH superfamily
2K3VA 1GU6A 1QO8A 1D4CA 3D1IA 1SP3A 2RDZA 4Q5CA 2E80A 3BNJA 2RF7A 4Q1OA 2CZSA 3TORA 1FT5A 1BVBA 1P2HA 3UBRA 4Q0TA 1OAHA 1JNIA 3L1TA 1P2EA 2B7RA 4Q17A 2OT4A 4L3YA 4Q4UA 1M1PA 1LJ1A 3LG1A 2J7AA 1KSSA 1JRZA 1Q9IA 1M64A 2B7SA 2VR0A 3LGQA 1FS9A 3MMOA 1FS8A 4L3XA 4WJYA 3F29A 1M1RA 1E39A 4L3ZA 1FT6A 3SCEA 1Y0PA 3FO3A 2ZO5A 1D4EA 3GM6A 1JRYA 3OWMA 3RKHA 3TTBA 3UU9A 1FS7A 3S7WA 3BNHA 1D4DA 1QJDA 1JRXA 1KSUA 3BNGA 2E81A 3BNFA 4L38A 3SXQA 1QDBA 4Q5BA 1M1QA
chains in the Genus database with same CATH topology
2K3VA 1GU6A 1QO8A 1D4CA 3D1IA 1SP3A 2RDZA 4Q5CA 2E80A 3BNJA 2RF7A 4Q1OA 3UBRA 3TORA 1FT5A 1BVBA 1P2HA 4Q0TA 1OAHA 1JNIA 3L1TA 1P2EA 2B7RA 4Q17A 2OT4A 4L3YA 4Q4UA 1M1PA 1LJ1A 3LG1A 2J7AA 1KSSA 1JRZA 1Q9IA 1M64A 2B7SA 2VR0A 3LGQA 1FS9A 3MMOA 1FS8A 4L3XA 4WJYA 3F29A 1M1RA 1E39A 4L3ZA 1FT6A 3SCEA 1Y0PA 3FO3A 2ZO5A 1D4EA 3GM6A 1JRYA 3OWMA 3RKHA 3TTBA 3UU9A 1FS7A 3S7WA 3BNHA 1D4DA 1QJDA 1JRXA 1KSUA 3BNGA 2E81A 3BNFA 4L38A 3SXQA 1QDBA 4Q5BA 1M1QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3V A;  1GU6 A;  1QO8 A;  1D4C A;  3D1I A;  1SP3 A;  2RDZ A;  4Q5C A;  2E80 A;  3BNJ A;  2RF7 A;  4Q1O A;  3UBR A;  3TOR A;  1FT5 A;  1BVB A;  1P2H A;  4Q0T A;  1OAH A;  1JNI A;  3L1T A;  1P2E A;  2B7R A;  4Q17 A;  2OT4 A;  4L3Y A;  4Q4U A;  1M1P A;  1LJ1 A;  3LG1 A;  2J7A A;  1KSS A;  1JRZ A;  1Q9I A;  1M64 A;  2B7S A;  2VR0 A;  3LGQ A;  1FS9 A;  3MMO A;  1FS8 A;  4L3X A;  4WJY A;  3F29 A;  1M1R A;  1E39 A;  4L3Z A;  1FT6 A;  3SCE A;  1Y0P A;  3FO3 A;  2ZO5 A;  1D4E A;  3GM6 A;  1JRY A;  3OWM A;  3RKH A;  3TTB A;  3UU9 A;  1FS7 A;  3S7W A;  3BNH A;  1D4D A;  1QJD A;  1JRX A;  1KSU A;  3BNG A;  2E81 A;  3BNF A;  4L38 A;  3SXQ A;  1QDB A;  4Q5B A;  1M1Q A; 
#chains in the Genus database with same CATH topology
 2K3V A;  1GU6 A;  1QO8 A;  1D4C A;  3D1I A;  1SP3 A;  2RDZ A;  4Q5C A;  2E80 A;  3BNJ A;  2RF7 A;  4Q1O A;  2CZS A;  3TOR A;  1FT5 A;  1BVB A;  1P2H A;  3UBR A;  4Q0T A;  1OAH A;  1JNI A;  3L1T A;  1P2E A;  2B7R A;  4Q17 A;  2OT4 A;  4L3Y A;  4Q4U A;  1M1P A;  1LJ1 A;  3LG1 A;  2J7A A;  1KSS A;  1JRZ A;  1Q9I A;  1M64 A;  2B7S A;  2VR0 A;  3LGQ A;  1FS9 A;  3MMO A;  1FS8 A;  4L3X A;  4WJY A;  3F29 A;  1M1R A;  1E39 A;  4L3Z A;  1FT6 A;  3SCE A;  1Y0P A;  3FO3 A;  2ZO5 A;  1D4E A;  3GM6 A;  1JRY A;  3OWM A;  3RKH A;  3TTB A;  3UU9 A;  1FS7 A;  3S7W A;  3BNH A;  1D4D A;  1QJD A;  1JRX A;  1KSU A;  3BNG A;  2E81 A;  3BNF A;  4L38 A;  3SXQ A;  1QDB A;  4Q5B A;  1M1Q A; 
#chains in the Genus database with same CATH homology
 2K3V A;  1GU6 A;  1QO8 A;  1D4C A;  3D1I A;  1SP3 A;  2RDZ A;  4Q5C A;  2E80 A;  3BNJ A;  2RF7 A;  4Q1O A;  3UBR A;  3TOR A;  1FT5 A;  1BVB A;  1P2H A;  4Q0T A;  1OAH A;  1JNI A;  3L1T A;  1P2E A;  2B7R A;  4Q17 A;  2OT4 A;  4L3Y A;  4Q4U A;  1M1P A;  1LJ1 A;  3LG1 A;  2J7A A;  1KSS A;  1JRZ A;  1Q9I A;  1M64 A;  2B7S A;  2VR0 A;  3LGQ A;  1FS9 A;  3MMO A;  1FS8 A;  4L3X A;  4WJY A;  3F29 A;  1M1R A;  1E39 A;  4L3Z A;  1FT6 A;  3SCE A;  1Y0P A;  3FO3 A;  2ZO5 A;  1D4E A;  3GM6 A;  1JRY A;  3OWM A;  3RKH A;  3TTB A;  3UU9 A;  1FS7 A;  3S7W A;  3BNH A;  1D4D A;  1QJD A;  1JRX A;  1KSU A;  3BNG A;  2E81 A;  3BNF A;  4L38 A;  3SXQ A;  1QDB A;  4Q5B A;  1M1Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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