1M21A

Crystal structure analysis of the peptide amidase pam in complex with the competitive inhibitor chymostatin
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
487
structure length
487
Chain Sequence
FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRTRARRPPHF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Peptide Amidase
publication title An alternative mechanism for amidase signature enzymes
pubmed doi rcsb
source organism Stenotrophomonas maltophilia
total genus 190
structure length 487
sequence length 487
chains with identical sequence B
ec nomenclature ec 3.5.1.-:
pdb deposition date 2002-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01425 Amidase Amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1300.10 Alpha Beta Alpha-Beta Complex Amidase signature (AS) enzymes Amidase signature (AS) domain 1m21A00
2WJ1A 3OJ8A 1O9OA 3K7FA 4ISTA 4N0HA 1OCKA 3IP4A 5AC3A 3A1IA 4ISSA 3QJ8A 1OBIA 2VYAA 3QKVA 3H0RA 2DC0A 1O9NA 3QK5A 3AL0A 4YJ6A 1OBLA 1M22A 1OCHA 3K83A 2GI3A 4DO3A 3A2PA 4N0IA 1M21A 1OBJA 3H0LA 1OCLA 2G5HA 4J5PA 4GYRA 4HBPA 2G5IA 3K84A 2WJ2A 4GYSA 3KFUE 2DQNA 4CP8A 3LJ7A 4YJIA 2F2AA 3A1KA 2WAPA 3PPMA 2DF4A 4WJ3A 1OBKA 1OCMA 3PR0A 3QJ9A 3H0MA 5EWQA 3LJ6A 1O9PA 1MT5A 1O9QA 3A2QA
chains in the Genus database with same CATH superfamily
2WJ1A 3OJ8A 1O9OA 3K7FA 4ISTA 4N0HA 1OCKA 3IP4A 5AC3A 3A1IA 4ISSA 3QJ8A 1OBIA 2VYAA 3QKVA 3H0RA 2DC0A 1O9NA 3QK5A 3AL0A 4YJ6A 1OBLA 1M22A 1OCHA 3K83A 2GI3A 4DO3A 3A2PA 4N0IA 1M21A 1OBJA 3H0LA 1OCLA 2G5HA 4J5PA 4GYRA 4HBPA 2G5IA 3K84A 2WJ2A 4GYSA 3KFUE 2DQNA 4CP8A 3LJ7A 4YJIA 2F2AA 3A1KA 2WAPA 3PPMA 2DF4A 4WJ3A 1OBKA 1OCMA 3PR0A 3QJ9A 3H0MA 5EWQA 3LJ6A 1O9PA 1MT5A 1O9QA 3A2QA
chains in the Genus database with same CATH topology
2WJ1A 3OJ8A 1O9OA 3K7FA 4ISTA 4N0HA 1OCKA 3IP4A 5AC3A 3A1IA 4ISSA 3QJ8A 1OBIA 2VYAA 3QKVA 3H0RA 2DC0A 1O9NA 3QK5A 3AL0A 4YJ6A 1OBLA 1M22A 1OCHA 3K83A 2GI3A 4DO3A 3A2PA 4N0IA 1M21A 1OBJA 3H0LA 1OCLA 2G5HA 4J5PA 4GYRA 4HBPA 2G5IA 3K84A 2WJ2A 4GYSA 3KFUE 2DQNA 4CP8A 3LJ7A 4YJIA 2F2AA 3A1KA 2WAPA 3PPMA 2DF4A 4WJ3A 1OBKA 1OCMA 3PR0A 3QJ9A 3H0MA 5EWQA 3LJ6A 1O9PA 1MT5A 1O9QA 3A2QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WJ1 A;  3OJ8 A;  1O9O A;  3K7F A;  4IST A;  4N0H A;  1OCK A;  3IP4 A;  5AC3 A;  3A1I A;  4ISS A;  3QJ8 A;  1OBI A;  2VYA A;  3QKV A;  3H0R A;  2DC0 A;  1O9N A;  3QK5 A;  3AL0 A;  4YJ6 A;  1OBL A;  1M22 A;  1OCH A;  3K83 A;  2GI3 A;  4DO3 A;  3A2P A;  4N0I A;  1M21 A;  1OBJ A;  3H0L A;  1OCL A;  2G5H A;  4J5P A;  4GYR A;  4HBP A;  2G5I A;  3K84 A;  2WJ2 A;  4GYS A;  3KFU E;  2DQN A;  4CP8 A;  3LJ7 A;  4YJI A;  2F2A A;  3A1K A;  2WAP A;  3PPM A;  2DF4 A;  4WJ3 A;  1OBK A;  1OCM A;  3PR0 A;  3QJ9 A;  3H0M A;  5EWQ A;  3LJ6 A;  1O9P A;  1MT5 A;  1O9Q A;  3A2Q A; 
#chains in the Genus database with same CATH topology
 2WJ1 A;  3OJ8 A;  1O9O A;  3K7F A;  4IST A;  4N0H A;  1OCK A;  3IP4 A;  5AC3 A;  3A1I A;  4ISS A;  3QJ8 A;  1OBI A;  2VYA A;  3QKV A;  3H0R A;  2DC0 A;  1O9N A;  3QK5 A;  3AL0 A;  4YJ6 A;  1OBL A;  1M22 A;  1OCH A;  3K83 A;  2GI3 A;  4DO3 A;  3A2P A;  4N0I A;  1M21 A;  1OBJ A;  3H0L A;  1OCL A;  2G5H A;  4J5P A;  4GYR A;  4HBP A;  2G5I A;  3K84 A;  2WJ2 A;  4GYS A;  3KFU E;  2DQN A;  4CP8 A;  3LJ7 A;  4YJI A;  2F2A A;  3A1K A;  2WAP A;  3PPM A;  2DF4 A;  4WJ3 A;  1OBK A;  1OCM A;  3PR0 A;  3QJ9 A;  3H0M A;  5EWQ A;  3LJ6 A;  1O9P A;  1MT5 A;  1O9Q A;  3A2Q A; 
#chains in the Genus database with same CATH homology
 2WJ1 A;  3OJ8 A;  1O9O A;  3K7F A;  4IST A;  4N0H A;  1OCK A;  3IP4 A;  5AC3 A;  3A1I A;  4ISS A;  3QJ8 A;  1OBI A;  2VYA A;  3QKV A;  3H0R A;  2DC0 A;  1O9N A;  3QK5 A;  3AL0 A;  4YJ6 A;  1OBL A;  1M22 A;  1OCH A;  3K83 A;  2GI3 A;  4DO3 A;  3A2P A;  4N0I A;  1M21 A;  1OBJ A;  3H0L A;  1OCL A;  2G5H A;  4J5P A;  4GYR A;  4HBP A;  2G5I A;  3K84 A;  2WJ2 A;  4GYS A;  3KFU E;  2DQN A;  4CP8 A;  3LJ7 A;  4YJI A;  2F2A A;  3A1K A;  2WAP A;  3PPM A;  2DF4 A;  4WJ3 A;  1OBK A;  1OCM A;  3PR0 A;  3QJ9 A;  3H0M A;  5EWQ A;  3LJ6 A;  1O9P A;  1MT5 A;  1O9Q A;  3A2Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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