1M22A

X-ray structure of native peptide amidase from stenotrophomonas maltophilia at 1.4 a
Total Genus 195
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
195
sequence length
490
structure length
487
Chain Sequence
PFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSDFPGESYSAAAVAGYPSLTVPMGQIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRTRARRPPHFDT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords peptide amidase
publication title An alternative mechanism for amidase signature enzymes
pubmed doi rcsb
source organism Stenotrophomonas maltophilia
total genus 195
structure length 487
sequence length 490
chains with identical sequence B
ec nomenclature ec 3.5.1.-:
pdb deposition date 2002-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01425 Amidase Amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1300.10 Alpha Beta Alpha-Beta Complex Amidase signature (AS) enzymes Amidase signature (AS) domain 1m22A00
5AC3A 4YJ6A 1OBLA 4GYSA 2G5HA 3IP4A 3QJ9A 4J5PA 1OBKA 1O9QA 1OCLA 3A2QA 4ISTA 1M22A 4N0IA 1O9OA 4HBPA 2DF4A 1M21A 3H0LA 4WJ3A 4N0HA 3K84A 4YJIA 1O9PA 2WAPA 3LJ6A 3K83A 3PPMA 4DO3A 3AL0A 3H0RA 2DC0A 3OJ8A 1OCMA 4CP8A 3QKVA 1O9NA 1OCHA 2WJ1A 2WJ2A 3QK5A 1OBJA 1MT5A 1OBIA 3A1KA 3K7FA 3A1IA 4GYRA 2DQNA 2GI3A 2VYAA 3LJ7A 2G5IA 3A2PA 5EWQA 2F2AA 3KFUE 3PR0A 4ISSA 3QJ8A 1OCKA 3H0MA
chains in the Genus database with same CATH superfamily
5AC3A 4YJ6A 1OBLA 4GYSA 2G5HA 3IP4A 3QJ9A 4J5PA 1OBKA 1O9QA 1OCLA 3A2QA 4ISTA 1M22A 4N0IA 1O9OA 4HBPA 2DF4A 1M21A 3H0LA 4WJ3A 4N0HA 3K84A 4YJIA 1O9PA 2WAPA 3LJ6A 3K83A 3PPMA 4DO3A 3AL0A 3H0RA 2DC0A 3OJ8A 1OCMA 4CP8A 3QKVA 1O9NA 1OCHA 2WJ1A 2WJ2A 3QK5A 1OBJA 1MT5A 1OBIA 3A1KA 3K7FA 3A1IA 4GYRA 2DQNA 2GI3A 2VYAA 3LJ7A 2G5IA 3A2PA 5EWQA 2F2AA 3KFUE 3PR0A 4ISSA 3QJ8A 1OCKA 3H0MA
chains in the Genus database with same CATH topology
5AC3A 4YJ6A 1OBLA 4GYSA 2G5HA 3IP4A 3QJ9A 4J5PA 1OBKA 1O9QA 1OCLA 3A2QA 4ISTA 1M22A 4N0IA 1O9OA 4HBPA 2DF4A 1M21A 3H0LA 4WJ3A 4N0HA 3K84A 4YJIA 1O9PA 2WAPA 3LJ6A 3K83A 3PPMA 4DO3A 3AL0A 3H0RA 2DC0A 3OJ8A 1OCMA 4CP8A 3QKVA 1O9NA 1OCHA 2WJ1A 2WJ2A 3QK5A 1OBJA 1MT5A 1OBIA 3A1KA 3K7FA 3A1IA 4GYRA 2DQNA 2GI3A 2VYAA 3LJ7A 2G5IA 3A2PA 5EWQA 2F2AA 3KFUE 3PR0A 4ISSA 3QJ8A 1OCKA 3H0MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AC3 A;  4YJ6 A;  1OBL A;  4GYS A;  2G5H A;  3IP4 A;  3QJ9 A;  4J5P A;  1OBK A;  1O9Q A;  1OCL A;  3A2Q A;  4IST A;  1M22 A;  4N0I A;  1O9O A;  4HBP A;  2DF4 A;  1M21 A;  3H0L A;  4WJ3 A;  4N0H A;  3K84 A;  4YJI A;  1O9P A;  2WAP A;  3LJ6 A;  3K83 A;  3PPM A;  4DO3 A;  3AL0 A;  3H0R A;  2DC0 A;  3OJ8 A;  1OCM A;  4CP8 A;  3QKV A;  1O9N A;  1OCH A;  2WJ1 A;  2WJ2 A;  3QK5 A;  1OBJ A;  1MT5 A;  1OBI A;  3A1K A;  3K7F A;  3A1I A;  4GYR A;  2DQN A;  2GI3 A;  2VYA A;  3LJ7 A;  2G5I A;  3A2P A;  5EWQ A;  2F2A A;  3KFU E;  3PR0 A;  4ISS A;  3QJ8 A;  1OCK A;  3H0M A; 
#chains in the Genus database with same CATH topology
 5AC3 A;  4YJ6 A;  1OBL A;  4GYS A;  2G5H A;  3IP4 A;  3QJ9 A;  4J5P A;  1OBK A;  1O9Q A;  1OCL A;  3A2Q A;  4IST A;  1M22 A;  4N0I A;  1O9O A;  4HBP A;  2DF4 A;  1M21 A;  3H0L A;  4WJ3 A;  4N0H A;  3K84 A;  4YJI A;  1O9P A;  2WAP A;  3LJ6 A;  3K83 A;  3PPM A;  4DO3 A;  3AL0 A;  3H0R A;  2DC0 A;  3OJ8 A;  1OCM A;  4CP8 A;  3QKV A;  1O9N A;  1OCH A;  2WJ1 A;  2WJ2 A;  3QK5 A;  1OBJ A;  1MT5 A;  1OBI A;  3A1K A;  3K7F A;  3A1I A;  4GYR A;  2DQN A;  2GI3 A;  2VYA A;  3LJ7 A;  2G5I A;  3A2P A;  5EWQ A;  2F2A A;  3KFU E;  3PR0 A;  4ISS A;  3QJ8 A;  1OCK A;  3H0M A; 
#chains in the Genus database with same CATH homology
 5AC3 A;  4YJ6 A;  1OBL A;  4GYS A;  2G5H A;  3IP4 A;  3QJ9 A;  4J5P A;  1OBK A;  1O9Q A;  1OCL A;  3A2Q A;  4IST A;  1M22 A;  4N0I A;  1O9O A;  4HBP A;  2DF4 A;  1M21 A;  3H0L A;  4WJ3 A;  4N0H A;  3K84 A;  4YJI A;  1O9P A;  2WAP A;  3LJ6 A;  3K83 A;  3PPM A;  4DO3 A;  3AL0 A;  3H0R A;  2DC0 A;  3OJ8 A;  1OCM A;  4CP8 A;  3QKV A;  1O9N A;  1OCH A;  2WJ1 A;  2WJ2 A;  3QK5 A;  1OBJ A;  1MT5 A;  1OBI A;  3A1K A;  3K7F A;  3A1I A;  4GYR A;  2DQN A;  2GI3 A;  2VYA A;  3LJ7 A;  2G5I A;  3A2P A;  5EWQ A;  2F2A A;  3KFU E;  3PR0 A;  4ISS A;  3QJ8 A;  1OCK A;  3H0M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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