1M2IA

Crystal structure of e44a/e56a mutant of cytochrome b5
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
82
structure length
82
Chain Sequence
AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATANFEDVGHSTDARELSKTFIIGELHPDDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of Cytochrome b5 Mutated at the Charged Surface-Residues and Their Interactions with Cytochrome c
pubmed rcsb
molecule tags Electron transport
source organism Bos taurus
molecule keywords cytochrome b5
total genus 23
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2002-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1m2iA00
1B5MA 1M59A 1MNYA 1F04A 1CXYA 2I96A 2M33A 3X34A 4HINA 1JEXA 1LDCA 1HKOA 2KEOA 1KBIA 1NX7A 1CYOA 4HILA 1IB7A 1BLVA 1AQAA 3MUSA 1LTDA 1ICCA 1LQXA 1M2IA 1EHBA 1M20A 1U9UA 3KS0A 1MJ4A 1FCBA 4X8YA 3X33A 3X32A 2AXXA 3OZZB 1J0QA 1IEUA 1ES1A 1BFXA 1LCOA 4B8NA 1M2MA 1AWPA 1LJ0A 1AXXA 1DO9A 1F03A 3X35A 1I87A 1I8CA 1U9MA 1B5AA 1B5BA 1I5UA 1IETA 2OZ0A 1T0GA 3LF5A 3NERA 1SOXA 1AW3A 2I89A 1J03A 1X3XA 1SH4A 1EUEA 1LR6A 2IBJA
chains in the Genus database with same CATH superfamily
1B5MA 1M59A 1MNYA 1F04A 1CXYA 2I96A 2M33A 3X34A 4HINA 1JEXA 1LDCA 1HKOA 2KEOA 1KBIA 1NX7A 1CYOA 4HILA 1IB7A 1BLVA 1AQAA 3MUSA 1LTDA 1ICCA 1LQXA 1M2IA 1EHBA 1M20A 1U9UA 3KS0A 1MJ4A 1FCBA 4X8YA 3X33A 3X32A 2AXXA 3OZZB 1J0QA 1IEUA 1ES1A 1BFXA 1LCOA 4B8NA 1M2MA 1AWPA 1LJ0A 1AXXA 1DO9A 1F03A 3X35A 1I87A 1I8CA 1U9MA 1B5AA 1B5BA 1I5UA 1IETA 2OZ0A 1T0GA 3LF5A 3NERA 1SOXA 1AW3A 2I89A 1J03A 1X3XA 1SH4A 1EUEA 1LR6A 2IBJA
chains in the Genus database with same CATH topology
1B5MA 1M59A 1MNYA 1F04A 1CXYA 2I96A 2M33A 3X34A 4HINA 1JEXA 1LDCA 1HKOA 2KEOA 1KBIA 1NX7A 1CYOA 4HILA 1IB7A 1BLVA 1AQAA 3MUSA 1LTDA 1ICCA 1LQXA 1M2IA 1EHBA 1M20A 1U9UA 3KS0A 1MJ4A 1FCBA 4X8YA 3X33A 3X32A 2AXXA 3OZZB 1J0QA 1IEUA 1ES1A 1BFXA 1LCOA 4B8NA 1M2MA 1AWPA 1LJ0A 1AXXA 1DO9A 1F03A 3X35A 1I87A 1I8CA 1U9MA 1B5AA 1B5BA 1I5UA 1IETA 2OZ0A 1T0GA 3LF5A 3NERA 1SOXA 1AW3A 2I89A 1J03A 1X3XA 1SH4A 1EUEA 1LR6A 2IBJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B5M A;  1M59 A;  1MNY A;  1F04 A;  1CXY A;  2I96 A;  2M33 A;  3X34 A;  4HIN A;  1JEX A;  1LDC A;  1HKO A;  2KEO A;  1KBI A;  1NX7 A;  1CYO A;  4HIL A;  1IB7 A;  1BLV A;  1AQA A;  3MUS A;  1LTD A;  1ICC A;  1LQX A;  1M2I A;  1EHB A;  1M20 A;  1U9U A;  3KS0 A;  1MJ4 A;  1FCB A;  4X8Y A;  3X33 A;  3X32 A;  2AXX A;  3OZZ B;  1J0Q A;  1IEU A;  1ES1 A;  1BFX A;  1LCO A;  4B8N A;  1M2M A;  1AWP A;  1LJ0 A;  1AXX A;  1DO9 A;  1F03 A;  3X35 A;  1I87 A;  1I8C A;  1U9M A;  1B5A A;  1B5B A;  1I5U A;  1IET A;  2OZ0 A;  1T0G A;  3LF5 A;  3NER A;  1SOX A;  1AW3 A;  2I89 A;  1J03 A;  1X3X A;  1SH4 A;  1EUE A;  1LR6 A;  2IBJ A; 
#chains in the Genus database with same CATH topology
 1B5M A;  1M59 A;  1MNY A;  1F04 A;  1CXY A;  2I96 A;  2M33 A;  3X34 A;  4HIN A;  1JEX A;  1LDC A;  1HKO A;  2KEO A;  1KBI A;  1NX7 A;  1CYO A;  4HIL A;  1IB7 A;  1BLV A;  1AQA A;  3MUS A;  1LTD A;  1ICC A;  1LQX A;  1M2I A;  1EHB A;  1M20 A;  1U9U A;  3KS0 A;  1MJ4 A;  1FCB A;  4X8Y A;  3X33 A;  3X32 A;  2AXX A;  3OZZ B;  1J0Q A;  1IEU A;  1ES1 A;  1BFX A;  1LCO A;  4B8N A;  1M2M A;  1AWP A;  1LJ0 A;  1AXX A;  1DO9 A;  1F03 A;  3X35 A;  1I87 A;  1I8C A;  1U9M A;  1B5A A;  1B5B A;  1I5U A;  1IET A;  2OZ0 A;  1T0G A;  3LF5 A;  3NER A;  1SOX A;  1AW3 A;  2I89 A;  1J03 A;  1X3X A;  1SH4 A;  1EUE A;  1LR6 A;  2IBJ A; 
#chains in the Genus database with same CATH homology
 1B5M A;  1M59 A;  1MNY A;  1F04 A;  1CXY A;  2I96 A;  2M33 A;  3X34 A;  4HIN A;  1JEX A;  1LDC A;  1HKO A;  2KEO A;  1KBI A;  1NX7 A;  1CYO A;  4HIL A;  1IB7 A;  1BLV A;  1AQA A;  3MUS A;  1LTD A;  1ICC A;  1LQX A;  1M2I A;  1EHB A;  1M20 A;  1U9U A;  3KS0 A;  1MJ4 A;  1FCB A;  4X8Y A;  3X33 A;  3X32 A;  2AXX A;  3OZZ B;  1J0Q A;  1IEU A;  1ES1 A;  1BFX A;  1LCO A;  4B8N A;  1M2M A;  1AWP A;  1LJ0 A;  1AXX A;  1DO9 A;  1F03 A;  3X35 A;  1I87 A;  1I8C A;  1U9M A;  1B5A A;  1B5B A;  1I5U A;  1IET A;  2OZ0 A;  1T0G A;  3LF5 A;  3NER A;  1SOX A;  1AW3 A;  2I89 A;  1J03 A;  1X3X A;  1SH4 A;  1EUE A;  1LR6 A;  2IBJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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