1M4JA

Crystal structure of the n-terminal adf-h domain of mouse twinfilin isoform-1
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
133
structure length
133
Chain Sequence
IQASEDVKEIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords A6 gene product
publication title Structural Conservation Between the Actin Monomer-binding Sites of Twinfilin and Actin-depolymerizing Factor (ADF)/Cofilin
pubmed doi rcsb
source organism Mus musculus
total genus 40
structure length 133
sequence length 133
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1m4jA00
3CJBG 5KYWB 1JHWA 2NUTB 3FG7A 3EGDB 1WNJA 2I2QA 1TVJA 1ESVS 5KYNA 1AK7A 2MV2A 3EH1A 5HVKD 5L6WC 2FH2A 4KEDA 2KVKA 3EG9A 3EFOB 4LIZA 1NLVG 3FG6A 3Q2BA 1HQZ1 3FFKA 5KYYB 1F7SA 5IVUA 1M4JA 1PD0A 2FH4A 1QPVA 1AK6A 3EGXB 4CBXG 1M2VB 1Q8GA 1NPHA 1SVQA 1T2LA 4PKIG 2FH1A 4Z94G 1C0GS 2NUPB 1KCQA 1NMDG 1D0NA 1NM1G 1T44G 1D4XG 5A1MA 1WFSA 5KYWA 1CNUA 2L72A 2FF3A 1V6FA 2HD7A 1AHQA 2NUTA 2FF6G 3EGDA 3L50A 1T3XA 5KYXB 2VACA 1VKKA 5KYUA 1COFA 3EH2A 4PKGG 2LXXA 2LLFA 4JD2H 4KEFA 1DEJS 4S10C 5KYYA 1M2OA 1WM4A 2QTVA 2VILA 1VFQA 1RGIG 2FGHA 1EQYS 1X67A 2MP4A 3EG9B 3EGXA 1M2VA 1H1VG 1SVRA 1YVNG 2VIKA 1SVYA 3A5LS 1PD1A 1P8XA 2LJ8A 2FH3A 3A5OS 3DAWB 3A5NS 3CJCG 1PCXA 1YAGG 3CI5G 2NUPA 2XFAA 5DD2A 3EFOA 1TMWA 3CIPG 5HVKB 4CBWG 2XF1A 1P8ZG 5KYUB 3TU5B 2MOTA 5FAFA 4BEX1 1Q8XA 1MDUA 1C0FS 1T3YA 3A5MS 5KYXA 2W0IA 2D8BA 1CFYA 1UDMA 4CBUG 4PKHB 1J72A 5FAEA 3FFNA 4KEEA
chains in the Genus database with same CATH superfamily
3CJBG 5KYWB 1JHWA 2NUTB 3FG7A 3EGDB 1WNJA 2I2QA 1TVJA 1ESVS 5KYNA 1AK7A 2MV2A 3EH1A 5HVKD 5L6WC 2FH2A 4KEDA 2KVKA 3EG9A 3EFOB 4LIZA 1NLVG 3FG6A 3Q2BA 1HQZ1 3FFKA 5KYYB 1F7SA 5IVUA 1M4JA 1PD0A 2FH4A 1QPVA 1AK6A 3EGXB 4CBXG 1M2VB 1Q8GA 1NPHA 1SVQA 1T2LA 4PKIG 2FH1A 4Z94G 1C0GS 2NUPB 1KCQA 1NMDG 1D0NA 1NM1G 1T44G 1D4XG 5A1MA 1WFSA 3DA7A 5KYWA 1CNUA 2L72A 2FF3A 1V6FA 2HD7A 1AHQA 2NUTA 2FF6G 3EGDA 3L50A 1T3XA 5KYXB 2VACA 1VKKA 5KYUA 1COFA 3EH2A 4PKGG 2LXXA 2LLFA 4JD2H 4KEFA 1DEJS 4S10C 5KYYA 1M2OA 1WM4A 2QTVA 2VILA 1VFQA 1RGIG 2FGHA 1EQYS 1X67A 2MP4A 3EG9B 3EGXA 1M2VA 1H1VG 1SVRA 1YVNG 2VIKA 1SVYA 3A5LS 1PD1A 1P8XA 2LJ8A 2FH3A 3A5OS 3DAWB 3A5NS 3CJCG 1PCXA 1YAGG 3CI5G 2NUPA 2XFAA 5DD2A 3EFOA 1TMWA 3CIPG 5HVKB 4CBWG 2XF1A 1P8ZG 5KYUB 3TU5B 2MOTA 5FAFA 4BEX1 1Q8XA 1MDUA 1C0FS 1T3YA 3A5MS 5KYXA 2W0IA 2D8BA 1CFYA 1UDMA 4CBUG 4PKHB 1J72A 5FAEA 3FFNA 4KEEA
chains in the Genus database with same CATH topology
3CJBG 5KYWB 1JHWA 2NUTB 3FG7A 3EGDB 1WNJA 2I2QA 1TVJA 1ESVS 5KYNA 1AK7A 2MV2A 3EH1A 5HVKD 5L6WC 2FH2A 4KEDA 2KVKA 3EG9A 3EFOB 4LIZA 1NLVG 3FG6A 3Q2BA 1HQZ1 3FFKA 5KYYB 1F7SA 5IVUA 1M4JA 1PD0A 2FH4A 1QPVA 1AK6A 3EGXB 4CBXG 1M2VB 1Q8GA 1NPHA 1SVQA 1T2LA 4PKIG 2FH1A 4Z94G 1C0GS 2NUPB 1KCQA 1NMDG 1D0NA 1NM1G 1T44G 1D4XG 5A1MA 1WFSA 3DA7A 5KYWA 1CNUA 2L72A 2FF3A 1V6FA 2HD7A 1AHQA 2NUTA 2FF6G 3EGDA 3L50A 1T3XA 5KYXB 2VACA 1VKKA 5KYUA 1COFA 3EH2A 4PKGG 2LXXA 2LLFA 4JD2H 4KEFA 1DEJS 4S10C 5KYYA 1M2OA 1WM4A 2QTVA 2VILA 1VFQA 1RGIG 2FGHA 1EQYS 1X67A 2MP4A 3EG9B 3EGXA 1M2VA 1H1VG 1SVRA 1YVNG 2VIKA 1SVYA 3A5LS 1PD1A 1P8XA 2LJ8A 2FH3A 3A5OS 3DAWB 3A5NS 3CJCG 1PCXA 1YAGG 3CI5G 2NUPA 2XFAA 5DD2A 3EFOA 1TMWA 3CIPG 5HVKB 4CBWG 2XF1A 1P8ZG 5KYUB 3TU5B 2MOTA 5FAFA 4BEX1 1Q8XA 1MDUA 1C0FS 1T3YA 3A5MS 5KYXA 2W0IA 2D8BA 1CFYA 1UDMA 4CBUG 4PKHB 1J72A 5FAEA 3FFNA 4KEEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CJB G;  5KYW B;  1JHW A;  2NUT B;  3FG7 A;  3EGD B;  1WNJ A;  2I2Q A;  1TVJ A;  1ESV S;  5KYN A;  1AK7 A;  2MV2 A;  3EH1 A;  5HVK D;  5L6W C;  2FH2 A;  4KED A;  2KVK A;  3EG9 A;  3EFO B;  4LIZ A;  1NLV G;  3FG6 A;  3Q2B A;  1HQZ 1;  3FFK A;  5KYY B;  1F7S A;  5IVU A;  1M4J A;  1PD0 A;  2FH4 A;  1QPV A;  1AK6 A;  3EGX B;  4CBX G;  1M2V B;  1Q8G A;  1NPH A;  1SVQ A;  1T2L A;  4PKI G;  2FH1 A;  4Z94 G;  1C0G S;  2NUP B;  1KCQ A;  1NMD G;  1D0N A;  1NM1 G;  1T44 G;  1D4X G;  5A1M A;  1WFS A;  5KYW A;  1CNU A;  2L72 A;  2FF3 A;  1V6F A;  2HD7 A;  1AHQ A;  2NUT A;  2FF6 G;  3EGD A;  3L50 A;  1T3X A;  5KYX B;  2VAC A;  1VKK A;  5KYU A;  1COF A;  3EH2 A;  4PKG G;  2LXX A;  2LLF A;  4JD2 H;  4KEF A;  1DEJ S;  4S10 C;  5KYY A;  1M2O A;  1WM4 A;  2QTV A;  2VIL A;  1VFQ A;  1RGI G;  2FGH A;  1EQY S;  1X67 A;  2MP4 A;  3EG9 B;  3EGX A;  1M2V A;  1H1V G;  1SVR A;  1YVN G;  2VIK A;  1SVY A;  3A5L S;  1PD1 A;  1P8X A;  2LJ8 A;  2FH3 A;  3A5O S;  3DAW B;  3A5N S;  3CJC G;  1PCX A;  1YAG G;  3CI5 G;  2NUP A;  2XFA A;  5DD2 A;  3EFO A;  1TMW A;  3CIP G;  5HVK B;  4CBW G;  2XF1 A;  1P8Z G;  5KYU B;  3TU5 B;  2MOT A;  5FAF A;  4BEX 1;  1Q8X A;  1MDU A;  1C0F S;  1T3Y A;  3A5M S;  5KYX A;  2W0I A;  2D8B A;  1CFY A;  1UDM A;  4CBU G;  4PKH B;  1J72 A;  5FAE A;  3FFN A;  4KEE A; 
#chains in the Genus database with same CATH topology
 3CJB G;  5KYW B;  1JHW A;  2NUT B;  3FG7 A;  3EGD B;  1WNJ A;  2I2Q A;  1TVJ A;  1ESV S;  5KYN A;  1AK7 A;  2MV2 A;  3EH1 A;  5HVK D;  5L6W C;  2FH2 A;  4KED A;  2KVK A;  3EG9 A;  3EFO B;  4LIZ A;  1NLV G;  3FG6 A;  3Q2B A;  1HQZ 1;  3FFK A;  5KYY B;  1F7S A;  5IVU A;  1M4J A;  1PD0 A;  2FH4 A;  1QPV A;  1AK6 A;  3EGX B;  4CBX G;  1M2V B;  1Q8G A;  1NPH A;  1SVQ A;  1T2L A;  4PKI G;  2FH1 A;  4Z94 G;  1C0G S;  2NUP B;  1KCQ A;  1NMD G;  1D0N A;  1NM1 G;  1T44 G;  1D4X G;  5A1M A;  1WFS A;  3DA7 A;  5KYW A;  1CNU A;  2L72 A;  2FF3 A;  1V6F A;  2HD7 A;  1AHQ A;  2NUT A;  2FF6 G;  3EGD A;  3L50 A;  1T3X A;  5KYX B;  2VAC A;  1VKK A;  5KYU A;  1COF A;  3EH2 A;  4PKG G;  2LXX A;  2LLF A;  4JD2 H;  4KEF A;  1DEJ S;  4S10 C;  5KYY A;  1M2O A;  1WM4 A;  2QTV A;  2VIL A;  1VFQ A;  1RGI G;  2FGH A;  1EQY S;  1X67 A;  2MP4 A;  3EG9 B;  3EGX A;  1M2V A;  1H1V G;  1SVR A;  1YVN G;  2VIK A;  1SVY A;  3A5L S;  1PD1 A;  1P8X A;  2LJ8 A;  2FH3 A;  3A5O S;  3DAW B;  3A5N S;  3CJC G;  1PCX A;  1YAG G;  3CI5 G;  2NUP A;  2XFA A;  5DD2 A;  3EFO A;  1TMW A;  3CIP G;  5HVK B;  4CBW G;  2XF1 A;  1P8Z G;  5KYU B;  3TU5 B;  2MOT A;  5FAF A;  4BEX 1;  1Q8X A;  1MDU A;  1C0F S;  1T3Y A;  3A5M S;  5KYX A;  2W0I A;  2D8B A;  1CFY A;  1UDM A;  4CBU G;  4PKH B;  1J72 A;  5FAE A;  3FFN A;  4KEE A; 
#chains in the Genus database with same CATH homology
 3CJB G;  5KYW B;  1JHW A;  2NUT B;  3FG7 A;  3EGD B;  1WNJ A;  2I2Q A;  1TVJ A;  1ESV S;  5KYN A;  1AK7 A;  2MV2 A;  3EH1 A;  5HVK D;  5L6W C;  2FH2 A;  4KED A;  2KVK A;  3EG9 A;  3EFO B;  4LIZ A;  1NLV G;  3FG6 A;  3Q2B A;  1HQZ 1;  3FFK A;  5KYY B;  1F7S A;  5IVU A;  1M4J A;  1PD0 A;  2FH4 A;  1QPV A;  1AK6 A;  3EGX B;  4CBX G;  1M2V B;  1Q8G A;  1NPH A;  1SVQ A;  1T2L A;  4PKI G;  2FH1 A;  4Z94 G;  1C0G S;  2NUP B;  1KCQ A;  1NMD G;  1D0N A;  1NM1 G;  1T44 G;  1D4X G;  5A1M A;  1WFS A;  3DA7 A;  5KYW A;  1CNU A;  2L72 A;  2FF3 A;  1V6F A;  2HD7 A;  1AHQ A;  2NUT A;  2FF6 G;  3EGD A;  3L50 A;  1T3X A;  5KYX B;  2VAC A;  1VKK A;  5KYU A;  1COF A;  3EH2 A;  4PKG G;  2LXX A;  2LLF A;  4JD2 H;  4KEF A;  1DEJ S;  4S10 C;  5KYY A;  1M2O A;  1WM4 A;  2QTV A;  2VIL A;  1VFQ A;  1RGI G;  2FGH A;  1EQY S;  1X67 A;  2MP4 A;  3EG9 B;  3EGX A;  1M2V A;  1H1V G;  1SVR A;  1YVN G;  2VIK A;  1SVY A;  3A5L S;  1PD1 A;  1P8X A;  2LJ8 A;  2FH3 A;  3A5O S;  3DAW B;  3A5N S;  3CJC G;  1PCX A;  1YAG G;  3CI5 G;  2NUP A;  2XFA A;  5DD2 A;  3EFO A;  1TMW A;  3CIP G;  5HVK B;  4CBW G;  2XF1 A;  1P8Z G;  5KYU B;  3TU5 B;  2MOT A;  5FAF A;  4BEX 1;  1Q8X A;  1MDU A;  1C0F S;  1T3Y A;  3A5M S;  5KYX A;  2W0I A;  2D8B A;  1CFY A;  1UDM A;  4CBU G;  4PKH B;  1J72 A;  5FAE A;  3FFN A;  4KEE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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