1M4JA

Crystal structure of the n-terminal adf-h domain of mouse twinfilin isoform-1
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
133
structure length
133
Chain Sequence
IQASEDVKEIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords A6 gene product
publication title Structural Conservation Between the Actin Monomer-binding Sites of Twinfilin and Actin-depolymerizing Factor (ADF)/Cofilin
pubmed doi rcsb
source organism Mus musculus
total genus 40
structure length 133
sequence length 133
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1m4jA00
1C0FS 1T44G 2W0IA 1X67A 3EH2A 1JHWA 2L72A 2NUPB 1MDUA 2FH4A 3TU5B 4CBWG 5KYYA 1T3XA 5KYUB 3EH1A 1NMDG 1M2VB 1C0GS 1TMWA 5KYXA 2VILA 1WM4A 1EQYS 2MP4A 3EGDB 1HQZ1 2FH3A 3EGXB 5KYUA 2MOTA 3A5LS 1T3YA 1TVJA 1PD1A 1YVNG 5KYWA 4LIZA 3EG9A 2FF6G 2VACA 1M2OA 1NPHA 2D8BA 5A1MA 1CNUA 2XFAA 2I2QA 3CIPG 5HVKB 5KYNA 1D4XG 1AK7A 4S10C 4Z94G 3CJCG 2VIKA 1SVRA 2HD7A 4PKIG 3A5OS 3FFKA 2KVKA 3Q2BA 2NUPA 1PCXA 2NUTB 1AHQA 4BEX1 3EFOB 1SVQA 5HVKD 1J72A 1P8ZG 1WNJA 1F7SA 3L50A 3FFNA 3DAWB 4KEEA 4PKGG 1M2VA 3CJBG 2LLFA 1V6FA 3FG7A 2MV2A 5L6WC 1PD0A 3EGDA 1ESVS 3EGXA 3EFOA 5DD2A 1COFA 1H1VG 4KEDA 2XF1A 1Q8XA 1NM1G 2FH2A 5IVUA 3A5MS 1Q8GA 1UDMA 3CI5G 4CBUG 1WFSA 5KYXB 1KCQA 2LJ8A 1AK6A 4PKHB 1QPVA 1VFQA 1YAGG 2QTVA 2FGHA 2FH1A 1CFYA 1D0NA 2NUTA 3A5NS 5FAEA 1RGIG 3FG6A 5KYWB 1DEJS 3EG9B 1SVYA 1VKKA 5KYYB 1NLVG 1P8XA 4KEFA 2FF3A 5FAFA 1T2LA 1M4JA 4JD2H 2LXXA 4CBXG
chains in the Genus database with same CATH superfamily
1C0FS 1T44G 2W0IA 1X67A 3EH2A 1JHWA 2L72A 2NUPB 1MDUA 2FH4A 3TU5B 4CBWG 5KYYA 1T3XA 5KYUB 3EH1A 1NMDG 1M2VB 1C0GS 1TMWA 5KYXA 2VILA 1WM4A 1EQYS 2MP4A 3EGDB 1HQZ1 2FH3A 3EGXB 5KYUA 2MOTA 3A5LS 1T3YA 1TVJA 1PD1A 1YVNG 5KYWA 4LIZA 3EG9A 2FF6G 2VACA 1M2OA 1NPHA 2D8BA 5A1MA 1CNUA 2XFAA 2I2QA 3CIPG 5HVKB 5KYNA 3DA7A 1D4XG 1AK7A 4S10C 4Z94G 3CJCG 2VIKA 1SVRA 2HD7A 4PKIG 3A5OS 3FFKA 2KVKA 3Q2BA 2NUPA 1PCXA 2NUTB 1AHQA 4BEX1 3EFOB 1SVQA 5HVKD 1J72A 1P8ZG 1WNJA 1F7SA 3L50A 3FFNA 3DAWB 4KEEA 4PKGG 1M2VA 3CJBG 2LLFA 1V6FA 3FG7A 2MV2A 5L6WC 1PD0A 3EGDA 1ESVS 3EGXA 3EFOA 5DD2A 1COFA 1H1VG 4KEDA 2XF1A 1Q8XA 1NM1G 2FH2A 5IVUA 3A5MS 1Q8GA 1UDMA 3CI5G 4CBUG 1WFSA 5KYXB 1KCQA 2LJ8A 1AK6A 4PKHB 1QPVA 1VFQA 1YAGG 2QTVA 2FGHA 2FH1A 1CFYA 1D0NA 2NUTA 3A5NS 5FAEA 1RGIG 3FG6A 5KYWB 1DEJS 3EG9B 1SVYA 1VKKA 5KYYB 1NLVG 1P8XA 4KEFA 2FF3A 5FAFA 1T2LA 1M4JA 4JD2H 2LXXA 4CBXG
chains in the Genus database with same CATH topology
1C0FS 1T44G 2W0IA 1X67A 3EH2A 1JHWA 2L72A 2NUPB 1MDUA 2FH4A 3TU5B 4CBWG 5KYYA 1T3XA 5KYUB 3EH1A 1NMDG 1M2VB 1C0GS 1TMWA 5KYXA 2VILA 1WM4A 1EQYS 2MP4A 3EGDB 1HQZ1 2FH3A 3EGXB 5KYUA 2MOTA 3A5LS 1T3YA 1TVJA 1PD1A 1YVNG 5KYWA 4LIZA 3EG9A 2FF6G 2VACA 1M2OA 1NPHA 2D8BA 5A1MA 1CNUA 2XFAA 2I2QA 3CIPG 5HVKB 5KYNA 3DA7A 1D4XG 1AK7A 4S10C 4Z94G 3CJCG 2VIKA 1SVRA 2HD7A 4PKIG 3A5OS 3FFKA 2KVKA 3Q2BA 2NUPA 1PCXA 2NUTB 1AHQA 4BEX1 3EFOB 1SVQA 5HVKD 1J72A 1P8ZG 1WNJA 1F7SA 3L50A 3FFNA 3DAWB 4KEEA 4PKGG 1M2VA 3CJBG 2LLFA 1V6FA 3FG7A 2MV2A 5L6WC 1PD0A 3EGDA 1ESVS 3EGXA 3EFOA 5DD2A 1COFA 1H1VG 4KEDA 2XF1A 1Q8XA 1NM1G 2FH2A 5IVUA 3A5MS 1Q8GA 1UDMA 3CI5G 4CBUG 1WFSA 5KYXB 1KCQA 2LJ8A 1AK6A 4PKHB 1QPVA 1VFQA 1YAGG 2QTVA 2FGHA 2FH1A 1CFYA 1D0NA 2NUTA 3A5NS 5FAEA 1RGIG 3FG6A 5KYWB 1DEJS 3EG9B 1SVYA 1VKKA 5KYYB 1NLVG 1P8XA 4KEFA 2FF3A 5FAFA 1T2LA 1M4JA 4JD2H 2LXXA 4CBXG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C0F S;  1T44 G;  2W0I A;  1X67 A;  3EH2 A;  1JHW A;  2L72 A;  2NUP B;  1MDU A;  2FH4 A;  3TU5 B;  4CBW G;  5KYY A;  1T3X A;  5KYU B;  3EH1 A;  1NMD G;  1M2V B;  1C0G S;  1TMW A;  5KYX A;  2VIL A;  1WM4 A;  1EQY S;  2MP4 A;  3EGD B;  1HQZ 1;  2FH3 A;  3EGX B;  5KYU A;  2MOT A;  3A5L S;  1T3Y A;  1TVJ A;  1PD1 A;  1YVN G;  5KYW A;  4LIZ A;  3EG9 A;  2FF6 G;  2VAC A;  1M2O A;  1NPH A;  2D8B A;  5A1M A;  1CNU A;  2XFA A;  2I2Q A;  3CIP G;  5HVK B;  5KYN A;  1D4X G;  1AK7 A;  4S10 C;  4Z94 G;  3CJC G;  2VIK A;  1SVR A;  2HD7 A;  4PKI G;  3A5O S;  3FFK A;  2KVK A;  3Q2B A;  2NUP A;  1PCX A;  2NUT B;  1AHQ A;  4BEX 1;  3EFO B;  1SVQ A;  5HVK D;  1J72 A;  1P8Z G;  1WNJ A;  1F7S A;  3L50 A;  3FFN A;  3DAW B;  4KEE A;  4PKG G;  1M2V A;  3CJB G;  2LLF A;  1V6F A;  3FG7 A;  2MV2 A;  5L6W C;  1PD0 A;  3EGD A;  1ESV S;  3EGX A;  3EFO A;  5DD2 A;  1COF A;  1H1V G;  4KED A;  2XF1 A;  1Q8X A;  1NM1 G;  2FH2 A;  5IVU A;  3A5M S;  1Q8G A;  1UDM A;  3CI5 G;  4CBU G;  1WFS A;  5KYX B;  1KCQ A;  2LJ8 A;  1AK6 A;  4PKH B;  1QPV A;  1VFQ A;  1YAG G;  2QTV A;  2FGH A;  2FH1 A;  1CFY A;  1D0N A;  2NUT A;  3A5N S;  5FAE A;  1RGI G;  3FG6 A;  5KYW B;  1DEJ S;  3EG9 B;  1SVY A;  1VKK A;  5KYY B;  1NLV G;  1P8X A;  4KEF A;  2FF3 A;  5FAF A;  1T2L A;  1M4J A;  4JD2 H;  2LXX A;  4CBX G; 
#chains in the Genus database with same CATH topology
 1C0F S;  1T44 G;  2W0I A;  1X67 A;  3EH2 A;  1JHW A;  2L72 A;  2NUP B;  1MDU A;  2FH4 A;  3TU5 B;  4CBW G;  5KYY A;  1T3X A;  5KYU B;  3EH1 A;  1NMD G;  1M2V B;  1C0G S;  1TMW A;  5KYX A;  2VIL A;  1WM4 A;  1EQY S;  2MP4 A;  3EGD B;  1HQZ 1;  2FH3 A;  3EGX B;  5KYU A;  2MOT A;  3A5L S;  1T3Y A;  1TVJ A;  1PD1 A;  1YVN G;  5KYW A;  4LIZ A;  3EG9 A;  2FF6 G;  2VAC A;  1M2O A;  1NPH A;  2D8B A;  5A1M A;  1CNU A;  2XFA A;  2I2Q A;  3CIP G;  5HVK B;  5KYN A;  3DA7 A;  1D4X G;  1AK7 A;  4S10 C;  4Z94 G;  3CJC G;  2VIK A;  1SVR A;  2HD7 A;  4PKI G;  3A5O S;  3FFK A;  2KVK A;  3Q2B A;  2NUP A;  1PCX A;  2NUT B;  1AHQ A;  4BEX 1;  3EFO B;  1SVQ A;  5HVK D;  1J72 A;  1P8Z G;  1WNJ A;  1F7S A;  3L50 A;  3FFN A;  3DAW B;  4KEE A;  4PKG G;  1M2V A;  3CJB G;  2LLF A;  1V6F A;  3FG7 A;  2MV2 A;  5L6W C;  1PD0 A;  3EGD A;  1ESV S;  3EGX A;  3EFO A;  5DD2 A;  1COF A;  1H1V G;  4KED A;  2XF1 A;  1Q8X A;  1NM1 G;  2FH2 A;  5IVU A;  3A5M S;  1Q8G A;  1UDM A;  3CI5 G;  4CBU G;  1WFS A;  5KYX B;  1KCQ A;  2LJ8 A;  1AK6 A;  4PKH B;  1QPV A;  1VFQ A;  1YAG G;  2QTV A;  2FGH A;  2FH1 A;  1CFY A;  1D0N A;  2NUT A;  3A5N S;  5FAE A;  1RGI G;  3FG6 A;  5KYW B;  1DEJ S;  3EG9 B;  1SVY A;  1VKK A;  5KYY B;  1NLV G;  1P8X A;  4KEF A;  2FF3 A;  5FAF A;  1T2L A;  1M4J A;  4JD2 H;  2LXX A;  4CBX G; 
#chains in the Genus database with same CATH homology
 1C0F S;  1T44 G;  2W0I A;  1X67 A;  3EH2 A;  1JHW A;  2L72 A;  2NUP B;  1MDU A;  2FH4 A;  3TU5 B;  4CBW G;  5KYY A;  1T3X A;  5KYU B;  3EH1 A;  1NMD G;  1M2V B;  1C0G S;  1TMW A;  5KYX A;  2VIL A;  1WM4 A;  1EQY S;  2MP4 A;  3EGD B;  1HQZ 1;  2FH3 A;  3EGX B;  5KYU A;  2MOT A;  3A5L S;  1T3Y A;  1TVJ A;  1PD1 A;  1YVN G;  5KYW A;  4LIZ A;  3EG9 A;  2FF6 G;  2VAC A;  1M2O A;  1NPH A;  2D8B A;  5A1M A;  1CNU A;  2XFA A;  2I2Q A;  3CIP G;  5HVK B;  5KYN A;  3DA7 A;  1D4X G;  1AK7 A;  4S10 C;  4Z94 G;  3CJC G;  2VIK A;  1SVR A;  2HD7 A;  4PKI G;  3A5O S;  3FFK A;  2KVK A;  3Q2B A;  2NUP A;  1PCX A;  2NUT B;  1AHQ A;  4BEX 1;  3EFO B;  1SVQ A;  5HVK D;  1J72 A;  1P8Z G;  1WNJ A;  1F7S A;  3L50 A;  3FFN A;  3DAW B;  4KEE A;  4PKG G;  1M2V A;  3CJB G;  2LLF A;  1V6F A;  3FG7 A;  2MV2 A;  5L6W C;  1PD0 A;  3EGD A;  1ESV S;  3EGX A;  3EFO A;  5DD2 A;  1COF A;  1H1V G;  4KED A;  2XF1 A;  1Q8X A;  1NM1 G;  2FH2 A;  5IVU A;  3A5M S;  1Q8G A;  1UDM A;  3CI5 G;  4CBU G;  1WFS A;  5KYX B;  1KCQ A;  2LJ8 A;  1AK6 A;  4PKH B;  1QPV A;  1VFQ A;  1YAG G;  2QTV A;  2FGH A;  2FH1 A;  1CFY A;  1D0N A;  2NUT A;  3A5N S;  5FAE A;  1RGI G;  3FG6 A;  5KYW B;  1DEJ S;  3EG9 B;  1SVY A;  1VKK A;  5KYY B;  1NLV G;  1P8X A;  4KEF A;  2FF3 A;  5FAF A;  1T2L A;  1M4J A;  4JD2 H;  2LXX A;  4CBX G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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