1M4UL

Crystal structure of bone morphogenetic protein-7 (bmp-7) in complex with the secreted antagonist noggin
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
112
structure length
112
Chain Sequence
ENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone/growth factor
molecule keywords Bone Morphogenetic Protein-7
publication title Structural Basis of BMP Signalling Inhibition by the Cystine Knot Protein Noggin
pubmed doi rcsb
source organism Homo sapiens
total genus 17
structure length 112
sequence length 112
ec nomenclature
pdb deposition date 2002-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1m4uL00
1FZVA 1B8MA 5F3HI 1B8MB 2B0UA 2GOOA 4EC7A 1HCFA 2H64A 1VPFA 2QCQA 2ARPA 4EFVA 3B4VA 2GNNA 1NYSB 4HQXA 5HHVA 3EVSB 2ASKA 2QR0C 5HK5E 4EAXA 1TGJA 4UHZA 4BV4L 1VPPV 2VPFA 1BTGA 4X1JA 2P6AA 5BQEA 1REUA 2FJHV 2IFGE 1AOCA 4LXSJ 4KV5A 4ZBNA 1WAQA 3V2AA 3QB4A 1BETA 1BMPA 1KLCA 4MQWA 4FAOA 2XACA 4HR9A 3S1KV 2V5EB 1TGKA 4MQWB 5FV1V 3RJRA 5HI3A 1WQ9A 1MKKA 1KATW 1NT3A 4MPLA 1WQ9B 2QCWA 4XPJA 2GYZA 4UI2B 5HHXA 5BQCA 1SGFB 2QJ9A 1FL7A 3MJKA 4QCIC 1FL7B 3KFDA 1MJVA 4MIDA 5HI4A 5AEJA 1WWWV 1SG1A 3EO1C 3IJ2A 1MKGA 5HI5A 1KTZA 3P9WA 1M4UL 1HRPA 1AGQA 1HRPB 1BJ1V 1PDGA 1M4UA 5BPUA 1E9JA 5FV2V 4HQUA 4GLNE 4EDWV 4YCGC 1KLAA 4GLSE 2C7WA 4UI0A 5HHCA 1HD4A 3SEKB 1JPYA 3FUBB 1TFGA 4HSAA 4YCIC 4UI1A 4UHYA 1S4YB 2KD3A 5BQBA 3MJGA 2R53A 2PJYA 1QFWB 3BMPA 3BDYV 1WQ8A 2GH0C 1B8KA 1B98A 3E07A 2ARVA 2X1WA 2XV7A 1HCNA 1REWA 1HCNB 3V6BA 4AY9A 4WPBA 4AY9B 5HK5A 5E4GA 1XWDA 1LX5A 5BQ8D 4KZNA 4ZFFC 5BQ8A 1XWDB 4QAFC 5BQ8B 2GYRA 2FJGV 1NYUB 1RV6V 1TZHV 1BNDA 3QTKA 2QJAA 4KXZA 1QTYR 2BHKA 2X1XE 1BNDB 4QHUC 3BK3A 5F3BC 5HHDA 1ZKZA 3JVFA 2TGIA 1LXIA 3S1BV 2VXSA 2QJBA 3BUKA 1CZ8V 5JZ7A 4N1DA 1DZ7A 5BQEB 1QFWA 2H62A 1FLTV 2VWEA 3HH2A 4LXRJ 1ES7A 2R52A 4EDXV 1TZIV
chains in the Genus database with same CATH superfamily
1FZVA 1B8MA 5F3HI 1B8MB 2B0UA 2GOOA 4EC7A 1HCFA 2H64A 1VPFA 2QCQA 2ARPA 4EFVA 3B4VA 2GNNA 1NYSB 4HQXA 5HHVA 3EVSB 2ASKA 2QR0C 5HK5E 4EAXA 1TGJA 4UHZA 4BV4L 1VPPV 2VPFA 1BTGA 4X1JA 2P6AA 5BQEA 1REUA 2FJHV 2IFGE 1AOCA 4LXSJ 4KV5A 4ZBNA 1WAQA 3V2AA 3QB4A 1BETA 1BMPA 1KLCA 4MQWA 4FAOA 2XACA 4HR9A 3S1KV 2V5EB 1TGKA 4MQWB 5FV1V 3RJRA 5HI3A 1WQ9A 1MKKA 1KATW 1NT3A 4MPLA 1WQ9B 2QCWA 4XPJA 2GYZA 4UI2B 5HHXA 5BQCA 1SGFB 2QJ9A 1FL7A 3MJKA 4QCIC 1FL7B 3KFDA 1MJVA 4MIDA 5HI4A 5AEJA 1WWWV 1SG1A 3EO1C 3IJ2A 1MKGA 5HI5A 1KTZA 3P9WA 1M4UL 1HRPA 1AGQA 1HRPB 1BJ1V 1PDGA 1M4UA 5BPUA 1E9JA 5FV2V 4HQUA 4GLNE 4EDWV 4YCGC 1KLAA 4GLSE 2C7WA 4UI0A 5HHCA 1HD4A 3SEKB 1JPYA 3FUBB 1TFGA 4HSAA 4YCIC 4UI1A 4UHYA 1S4YB 2KD3A 5BQBA 3MJGA 2R53A 2PJYA 1QFWB 3BMPA 3BDYV 1WQ8A 2GH0C 1B8KA 1B98A 3E07A 2ARVA 2X1WA 2XV7A 1HCNA 1REWA 1HCNB 3V6BA 4AY9A 4WPBA 4AY9B 5HK5A 5E4GA 1XWDA 1LX5A 5BQ8D 4KZNA 4ZFFC 5BQ8A 1XWDB 4QAFC 5BQ8B 2GYRA 2FJGV 1NYUB 1RV6V 1TZHV 1BNDA 3QTKA 2QJAA 4KXZA 1QTYR 2BHKA 2X1XE 1BNDB 4QHUC 3BK3A 5F3BC 5HHDA 1ZKZA 3JVFA 2TGIA 1LXIA 3S1BV 2VXSA 2QJBA 3BUKA 1CZ8V 5JZ7A 4N1DA 1DZ7A 5BQEB 1QFWA 2H62A 1FLTV 2VWEA 3HH2A 4LXRJ 1ES7A 2R52A 4EDXV 1TZIV
chains in the Genus database with same CATH topology
1FZVA 1B8MA 5F3HI 1B8MB 2B0UA 2GOOA 4EC7A 1HCFA 2H64A 1VPFA 2QCQA 2ARPA 4EFVA 3B4VA 2GNNA 1NYSB 4HQXA 5HHVA 3EVSB 2ASKA 2QR0C 5HK5E 4EAXA 1TGJA 4UHZA 4BV4L 1VPPV 2VPFA 1BTGA 4X1JA 2P6AA 5BQEA 1REUA 2FJHV 2IFGE 1AOCA 4LXSJ 4KV5A 4ZBNA 1WAQA 3V2AA 3QB4A 1BETA 1BMPA 1KLCA 4MQWA 4FAOA 2XACA 4HR9A 3S1KV 2V5EB 1TGKA 4MQWB 5FV1V 3RJRA 5HI3A 1WQ9A 1MKKA 1KATW 1NT3A 4MPLA 1WQ9B 2QCWA 4XPJA 2GYZA 4UI2B 5HHXA 5BQCA 1SGFB 2QJ9A 1FL7A 3MJKA 4QCIC 1FL7B 3KFDA 1MJVA 4MIDA 5HI4A 5AEJA 1WWWV 1SG1A 3EO1C 3IJ2A 1MKGA 5HI5A 1KTZA 3P9WA 1M4UL 1HRPA 1AGQA 1HRPB 1BJ1V 1PDGA 1M4UA 5BPUA 1E9JA 5FV2V 4HQUA 4GLNE 4EDWV 4YCGC 1KLAA 4GLSE 2C7WA 4UI0A 5HHCA 1HD4A 3SEKB 1JPYA 3FUBB 1TFGA 4HSAA 4YCIC 4UI1A 4UHYA 1S4YB 2KD3A 5BQBA 3MJGA 2R53A 2PJYA 1QFWB 3BMPA 3BDYV 1WQ8A 2GH0C 1B8KA 1B98A 3E07A 2ARVA 2X1WA 2XV7A 1HCNA 1REWA 1HCNB 3V6BA 4AY9A 4WPBA 4AY9B 5HK5A 5E4GA 1XWDA 1LX5A 5BQ8D 4KZNA 4ZFFC 5BQ8A 1XWDB 4QAFC 5BQ8B 2GYRA 2FJGV 1NYUB 1RV6V 1TZHV 1BNDA 3QTKA 2QJAA 4KXZA 1QTYR 2BHKA 2X1XE 1BNDB 4QHUC 3BK3A 5F3BC 5HHDA 1ZKZA 3JVFA 2TGIA 1LXIA 3S1BV 2VXSA 2QJBA 3BUKA 1CZ8V 5JZ7A 4N1DA 1DZ7A 5BQEB 1QFWA 2H62A 1FLTV 2VWEA 3HH2A 4LXRJ 1ES7A 2R52A 4EDXV 1TZIV
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FZV A;  1B8M A;  5F3H I;  1B8M B;  2B0U A;  2GOO A;  4EC7 A;  1HCF A;  2H64 A;  1VPF A;  2QCQ A;  2ARP A;  4EFV A;  3B4V A;  2GNN A;  1NYS B;  4HQX A;  5HHV A;  3EVS B;  2ASK A;  2QR0 C;  5HK5 E;  4EAX A;  1TGJ A;  4UHZ A;  4BV4 L;  1VPP V;  2VPF A;  1BTG A;  4X1J A;  2P6A A;  5BQE A;  1REU A;  2FJH V;  2IFG E;  1AOC A;  4LXS J;  4KV5 A;  4ZBN A;  1WAQ A;  3V2A A;  3QB4 A;  1BET A;  1BMP A;  1KLC A;  4MQW A;  4FAO A;  2XAC A;  4HR9 A;  3S1K V;  2V5E B;  1TGK A;  4MQW B;  5FV1 V;  3RJR A;  5HI3 A;  1WQ9 A;  1MKK A;  1KAT W;  1NT3 A;  4MPL A;  1WQ9 B;  2QCW A;  4XPJ A;  2GYZ A;  4UI2 B;  5HHX A;  5BQC A;  1SGF B;  2QJ9 A;  1FL7 A;  3MJK A;  4QCI C;  1FL7 B;  3KFD A;  1MJV A;  4MID A;  5HI4 A;  5AEJ A;  1WWW V;  1SG1 A;  3EO1 C;  3IJ2 A;  1MKG A;  5HI5 A;  1KTZ A;  3P9W A;  1M4U L;  1HRP A;  1AGQ A;  1HRP B;  1BJ1 V;  1PDG A;  1M4U A;  5BPU A;  1E9J A;  5FV2 V;  4HQU A;  4GLN E;  4EDW V;  4YCG C;  1KLA A;  4GLS E;  2C7W A;  4UI0 A;  5HHC A;  1HD4 A;  3SEK B;  1JPY A;  3FUB B;  1TFG A;  4HSA A;  4YCI C;  4UI1 A;  4UHY A;  1S4Y B;  2KD3 A;  5BQB A;  3MJG A;  2R53 A;  2PJY A;  1QFW B;  3BMP A;  3BDY V;  1WQ8 A;  2GH0 C;  1B8K A;  1B98 A;  3E07 A;  2ARV A;  2X1W A;  2XV7 A;  1HCN A;  1REW A;  1HCN B;  3V6B A;  4AY9 A;  4WPB A;  4AY9 B;  5HK5 A;  5E4G A;  1XWD A;  1LX5 A;  5BQ8 D;  4KZN A;  4ZFF C;  5BQ8 A;  1XWD B;  4QAF C;  5BQ8 B;  2GYR A;  2FJG V;  1NYU B;  1RV6 V;  1TZH V;  1BND A;  3QTK A;  2QJA A;  4KXZ A;  1QTY R;  2BHK A;  2X1X E;  1BND B;  4QHU C;  3BK3 A;  5F3B C;  5HHD A;  1ZKZ A;  3JVF A;  2TGI A;  1LXI A;  3S1B V;  2VXS A;  2QJB A;  3BUK A;  1CZ8 V;  5JZ7 A;  4N1D A;  1DZ7 A;  5BQE B;  1QFW A;  2H62 A;  1FLT V;  2VWE A;  3HH2 A;  4LXR J;  1ES7 A;  2R52 A;  4EDX V;  1TZI V; 
#chains in the Genus database with same CATH topology
 1FZV A;  1B8M A;  5F3H I;  1B8M B;  2B0U A;  2GOO A;  4EC7 A;  1HCF A;  2H64 A;  1VPF A;  2QCQ A;  2ARP A;  4EFV A;  3B4V A;  2GNN A;  1NYS B;  4HQX A;  5HHV A;  3EVS B;  2ASK A;  2QR0 C;  5HK5 E;  4EAX A;  1TGJ A;  4UHZ A;  4BV4 L;  1VPP V;  2VPF A;  1BTG A;  4X1J A;  2P6A A;  5BQE A;  1REU A;  2FJH V;  2IFG E;  1AOC A;  4LXS J;  4KV5 A;  4ZBN A;  1WAQ A;  3V2A A;  3QB4 A;  1BET A;  1BMP A;  1KLC A;  4MQW A;  4FAO A;  2XAC A;  4HR9 A;  3S1K V;  2V5E B;  1TGK A;  4MQW B;  5FV1 V;  3RJR A;  5HI3 A;  1WQ9 A;  1MKK A;  1KAT W;  1NT3 A;  4MPL A;  1WQ9 B;  2QCW A;  4XPJ A;  2GYZ A;  4UI2 B;  5HHX A;  5BQC A;  1SGF B;  2QJ9 A;  1FL7 A;  3MJK A;  4QCI C;  1FL7 B;  3KFD A;  1MJV A;  4MID A;  5HI4 A;  5AEJ A;  1WWW V;  1SG1 A;  3EO1 C;  3IJ2 A;  1MKG A;  5HI5 A;  1KTZ A;  3P9W A;  1M4U L;  1HRP A;  1AGQ A;  1HRP B;  1BJ1 V;  1PDG A;  1M4U A;  5BPU A;  1E9J A;  5FV2 V;  4HQU A;  4GLN E;  4EDW V;  4YCG C;  1KLA A;  4GLS E;  2C7W A;  4UI0 A;  5HHC A;  1HD4 A;  3SEK B;  1JPY A;  3FUB B;  1TFG A;  4HSA A;  4YCI C;  4UI1 A;  4UHY A;  1S4Y B;  2KD3 A;  5BQB A;  3MJG A;  2R53 A;  2PJY A;  1QFW B;  3BMP A;  3BDY V;  1WQ8 A;  2GH0 C;  1B8K A;  1B98 A;  3E07 A;  2ARV A;  2X1W A;  2XV7 A;  1HCN A;  1REW A;  1HCN B;  3V6B A;  4AY9 A;  4WPB A;  4AY9 B;  5HK5 A;  5E4G A;  1XWD A;  1LX5 A;  5BQ8 D;  4KZN A;  4ZFF C;  5BQ8 A;  1XWD B;  4QAF C;  5BQ8 B;  2GYR A;  2FJG V;  1NYU B;  1RV6 V;  1TZH V;  1BND A;  3QTK A;  2QJA A;  4KXZ A;  1QTY R;  2BHK A;  2X1X E;  1BND B;  4QHU C;  3BK3 A;  5F3B C;  5HHD A;  1ZKZ A;  3JVF A;  2TGI A;  1LXI A;  3S1B V;  2VXS A;  2QJB A;  3BUK A;  1CZ8 V;  5JZ7 A;  4N1D A;  1DZ7 A;  5BQE B;  1QFW A;  2H62 A;  1FLT V;  2VWE A;  3HH2 A;  4LXR J;  1ES7 A;  2R52 A;  4EDX V;  1TZI V; 
#chains in the Genus database with same CATH homology
 1FZV A;  1B8M A;  5F3H I;  1B8M B;  2B0U A;  2GOO A;  4EC7 A;  1HCF A;  2H64 A;  1VPF A;  2QCQ A;  2ARP A;  4EFV A;  3B4V A;  2GNN A;  1NYS B;  4HQX A;  5HHV A;  3EVS B;  2ASK A;  2QR0 C;  5HK5 E;  4EAX A;  1TGJ A;  4UHZ A;  4BV4 L;  1VPP V;  2VPF A;  1BTG A;  4X1J A;  2P6A A;  5BQE A;  1REU A;  2FJH V;  2IFG E;  1AOC A;  4LXS J;  4KV5 A;  4ZBN A;  1WAQ A;  3V2A A;  3QB4 A;  1BET A;  1BMP A;  1KLC A;  4MQW A;  4FAO A;  2XAC A;  4HR9 A;  3S1K V;  2V5E B;  1TGK A;  4MQW B;  5FV1 V;  3RJR A;  5HI3 A;  1WQ9 A;  1MKK A;  1KAT W;  1NT3 A;  4MPL A;  1WQ9 B;  2QCW A;  4XPJ A;  2GYZ A;  4UI2 B;  5HHX A;  5BQC A;  1SGF B;  2QJ9 A;  1FL7 A;  3MJK A;  4QCI C;  1FL7 B;  3KFD A;  1MJV A;  4MID A;  5HI4 A;  5AEJ A;  1WWW V;  1SG1 A;  3EO1 C;  3IJ2 A;  1MKG A;  5HI5 A;  1KTZ A;  3P9W A;  1M4U L;  1HRP A;  1AGQ A;  1HRP B;  1BJ1 V;  1PDG A;  1M4U A;  5BPU A;  1E9J A;  5FV2 V;  4HQU A;  4GLN E;  4EDW V;  4YCG C;  1KLA A;  4GLS E;  2C7W A;  4UI0 A;  5HHC A;  1HD4 A;  3SEK B;  1JPY A;  3FUB B;  1TFG A;  4HSA A;  4YCI C;  4UI1 A;  4UHY A;  1S4Y B;  2KD3 A;  5BQB A;  3MJG A;  2R53 A;  2PJY A;  1QFW B;  3BMP A;  3BDY V;  1WQ8 A;  2GH0 C;  1B8K A;  1B98 A;  3E07 A;  2ARV A;  2X1W A;  2XV7 A;  1HCN A;  1REW A;  1HCN B;  3V6B A;  4AY9 A;  4WPB A;  4AY9 B;  5HK5 A;  5E4G A;  1XWD A;  1LX5 A;  5BQ8 D;  4KZN A;  4ZFF C;  5BQ8 A;  1XWD B;  4QAF C;  5BQ8 B;  2GYR A;  2FJG V;  1NYU B;  1RV6 V;  1TZH V;  1BND A;  3QTK A;  2QJA A;  4KXZ A;  1QTY R;  2BHK A;  2X1X E;  1BND B;  4QHU C;  3BK3 A;  5F3B C;  5HHD A;  1ZKZ A;  3JVF A;  2TGI A;  1LXI A;  3S1B V;  2VXS A;  2QJB A;  3BUK A;  1CZ8 V;  5JZ7 A;  4N1D A;  1DZ7 A;  5BQE B;  1QFW A;  2H62 A;  1FLT V;  2VWE A;  3HH2 A;  4LXR J;  1ES7 A;  2R52 A;  4EDX V;  1TZI V; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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