1M9CC

X-ray crystal structure of cyclophilin a/hiv-1 ca n-terminal domain (1-146) m-type complex.
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
146
structure length
146
Chain Sequence
PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase/viral protein
source organism Homo sapiens
publication title Structural insights into the catalytic mechanism of cyclophilin A
pubmed doi rcsb
molecule keywords Cyclophilin A
total genus 49
structure length 146
sequence length 146
chains with identical sequence D
ec nomenclature
pdb deposition date 2002-07-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 1m9cC00
2GOLB 1M9EC 1P7NA 2LF4A 5JPAA 2X83A 1M9XC 2XDEA 4XRQA 4U0DA 1EM9A 3P05A 2M8LA 1M9CC 1AFVA 2EIAA 2WLVB 4U0CA 5HGOA 4U0EA 5HGKA 4WYMA 3H4EA 5HGNA 4HTWA 3H47A 5HGLA 1U7KA 3BP9A 4PH0A 2V4XA 4U0FA 4INBA 4XFYA 4U0BA 4B4NA 4XFXA 1E6JP 1D1DA 4QNBA 1L6NA 1M9DC 2GONA 4XROA 1AK4C 2X2DD 3NTEA 4J93A 3MGEA 4E91A 2M8NA 2PWMA 1M9FC 4PH3A 1G03A 4PH2A 1EIAA 2X82A 2PWOA 4NX4C 2XGVA 2JPRA 4DGEC 2M8PA 2XGUA 1GWPA 1QRJA 2Y4ZA 4E92A 5HGMA 2KGFA 1M9YC 2WLVA 4DGAC 2XGYA 2PXRC 4XFZA 4U0AA 4LQWC
chains in the Genus database with same CATH superfamily
2GOLB 1M9EC 1P7NA 2LF4A 5JPAA 2X83A 1M9XC 2XDEA 4XRQA 4U0DA 1EM9A 3P05A 2M8LA 1M9CC 1AFVA 2EIAA 2WLVB 4U0CA 5HGOA 4U0EA 5HGKA 4WYMA 3H4EA 5HGNA 4HTWA 3H47A 5HGLA 1U7KA 3BP9A 4PH0A 2V4XA 4U0FA 4INBA 4XFYA 4U0BA 4B4NA 4XFXA 1E6JP 1D1DA 4QNBA 1L6NA 1M9DC 2GONA 4XROA 1AK4C 2X2DD 3NTEA 4J93A 3MGEA 4E91A 2M8NA 2PWMA 1M9FC 4PH3A 1G03A 4PH2A 1EIAA 2X82A 2PWOA 4NX4C 2XGVA 2JPRA 4DGEC 2M8PA 2XGUA 1GWPA 1QRJA 2Y4ZA 4E92A 5HGMA 2KGFA 1M9YC 2WLVA 4DGAC 2XGYA 2PXRC 4XFZA 4U0AA 4LQWC
chains in the Genus database with same CATH topology
2GOLB 1M9EC 1P7NA 2LF4A 5JPAA 2X83A 1M9XC 2XDEA 4XRQA 4U0DA 1EM9A 3P05A 2M8LA 1M9CC 1AFVA 2EIAA 2WLVB 4U0CA 5HGOA 4U0EA 5HGKA 4WYMA 3H4EA 5HGNA 4HTWA 3H47A 5HGLA 1U7KA 3BP9A 4PH0A 2V4XA 4U0FA 4INBA 4XFYA 4U0BA 4B4NA 4XFXA 1E6JP 1D1DA 4QNBA 1L6NA 1M9DC 2GONA 4XROA 1AK4C 2X2DD 3NTEA 4J93A 3MGEA 4E91A 2M8NA 2PWMA 1M9FC 4PH3A 1G03A 4PH2A 1EIAA 2X82A 2PWOA 4NX4C 2XGVA 2JPRA 4DGEC 2M8PA 2XGUA 1GWPA 1QRJA 2Y4ZA 4E92A 5HGMA 2KGFA 1M9YC 2WLVA 4DGAC 2XGYA 2PXRC 4XFZA 4U0AA 4LQWC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GOL B;  1M9E C;  1P7N A;  2LF4 A;  5JPA A;  2X83 A;  1M9X C;  2XDE A;  4XRQ A;  4U0D A;  1EM9 A;  3P05 A;  2M8L A;  1M9C C;  1AFV A;  2EIA A;  2WLV B;  4U0C A;  5HGO A;  4U0E A;  5HGK A;  4WYM A;  3H4E A;  5HGN A;  4HTW A;  3H47 A;  5HGL A;  1U7K A;  3BP9 A;  4PH0 A;  2V4X A;  4U0F A;  4INB A;  4XFY A;  4U0B A;  4B4N A;  4XFX A;  1E6J P;  1D1D A;  4QNB A;  1L6N A;  1M9D C;  2GON A;  4XRO A;  1AK4 C;  2X2D D;  3NTE A;  4J93 A;  3MGE A;  4E91 A;  2M8N A;  2PWM A;  1M9F C;  4PH3 A;  1G03 A;  4PH2 A;  1EIA A;  2X82 A;  2PWO A;  4NX4 C;  2XGV A;  2JPR A;  4DGE C;  2M8P A;  2XGU A;  1GWP A;  1QRJ A;  2Y4Z A;  4E92 A;  5HGM A;  2KGF A;  1M9Y C;  2WLV A;  4DGA C;  2XGY A;  2PXR C;  4XFZ A;  4U0A A;  4LQW C; 
#chains in the Genus database with same CATH topology
 2GOL B;  1M9E C;  1P7N A;  2LF4 A;  5JPA A;  2X83 A;  1M9X C;  2XDE A;  4XRQ A;  4U0D A;  1EM9 A;  3P05 A;  2M8L A;  1M9C C;  1AFV A;  2EIA A;  2WLV B;  4U0C A;  5HGO A;  4U0E A;  5HGK A;  4WYM A;  3H4E A;  5HGN A;  4HTW A;  3H47 A;  5HGL A;  1U7K A;  3BP9 A;  4PH0 A;  2V4X A;  4U0F A;  4INB A;  4XFY A;  4U0B A;  4B4N A;  4XFX A;  1E6J P;  1D1D A;  4QNB A;  1L6N A;  1M9D C;  2GON A;  4XRO A;  1AK4 C;  2X2D D;  3NTE A;  4J93 A;  3MGE A;  4E91 A;  2M8N A;  2PWM A;  1M9F C;  4PH3 A;  1G03 A;  4PH2 A;  1EIA A;  2X82 A;  2PWO A;  4NX4 C;  2XGV A;  2JPR A;  4DGE C;  2M8P A;  2XGU A;  1GWP A;  1QRJ A;  2Y4Z A;  4E92 A;  5HGM A;  2KGF A;  1M9Y C;  2WLV A;  4DGA C;  2XGY A;  2PXR C;  4XFZ A;  4U0A A;  4LQW C; 
#chains in the Genus database with same CATH homology
 2GOL B;  1M9E C;  1P7N A;  2LF4 A;  5JPA A;  2X83 A;  1M9X C;  2XDE A;  4XRQ A;  4U0D A;  1EM9 A;  3P05 A;  2M8L A;  1M9C C;  1AFV A;  2EIA A;  2WLV B;  4U0C A;  5HGO A;  4U0E A;  5HGK A;  4WYM A;  3H4E A;  5HGN A;  4HTW A;  3H47 A;  5HGL A;  1U7K A;  3BP9 A;  4PH0 A;  2V4X A;  4U0F A;  4INB A;  4XFY A;  4U0B A;  4B4N A;  4XFX A;  1E6J P;  1D1D A;  4QNB A;  1L6N A;  1M9D C;  2GON A;  4XRO A;  1AK4 C;  2X2D D;  3NTE A;  4J93 A;  3MGE A;  4E91 A;  2M8N A;  2PWM A;  1M9F C;  4PH3 A;  1G03 A;  4PH2 A;  1EIA A;  2X82 A;  2PWO A;  4NX4 C;  2XGV A;  2JPR A;  4DGE C;  2M8P A;  2XGU A;  1GWP A;  1QRJ A;  2Y4Z A;  4E92 A;  5HGM A;  2KGF A;  1M9Y C;  2WLV A;  4DGA C;  2XGY A;  2PXR C;  4XFZ A;  4U0A A;  4LQW C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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