1MAZA

X-ray structure of bcl-xl, an inhibitor of programmed cell death
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
196
structure length
143
Chain Sequence
MSQSNRELVVDFLSYKLSQKGYSWSQFIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Bcl-2-like protein 1
publication title X-ray and NMR structure of human Bcl-xL, an inhibitor of programmed cell death.
pubmed doi rcsb
source organism Homo sapiens
total genus 57
structure length 143
sequence length 196
ec nomenclature
pdb deposition date 1996-04-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
A PF02180 BH4 Bcl-2 homology region 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 1mazA00
3KJ2A 1R2IA 2IMTA 4BD8A 2O21A 5KU9A 2VOIA 3MQPA 4ZIFA 3KZ0A 4B4SA 4HW2A 4U2UA 1DDBA 3WIYA 1OHUA 4WMRA 2LR1A 4OQ6A 2K7WA 3WIXA 2B48A 4OQ5A 1BXLA 2O2MA 4BPIA 2MEJA 1TY4A 2ROCA 1PQ1A 5C3FA 3IHEA 3KJ0A 2KUAA 2JCNA 4QVXA 2RODA 1K3KA 1R2DA 3MK8A 4BD2A 1YSGA 2JM6B 2O22A 1YSNA 4U2VA 1R2GA 3DVUA 4G35A 5FMIA 4QNQA 2XA0A 3KJ1A 2KBWA 1R2HA 3IO9A 2XPXA 4BPJA 4HW4A 2A5YA 1MK3A 2O2NA 2PQKA 4K5BC 4ZIGA 4YJ4A 3IHCA 4MI8A 3D7VA 4ZIHA 2O2FA 2WH6A 4ZBFA 2VOFA 1G5MA 3ILCA 2YV6A 1YSIA 1R2EA 3IHDA 3I1HA 1ZY3A 1MAZA 3IIGA 4BD6A 4BDUA 4OYDA 4ZEQA 5IEZA 2VOHA 1G5JA 5KTGA 2BZWA 1LXLA 1YSWA 4ZIEA 4S0PA 5IF4A 4YK9A 2V6QA 4ZBIA 1GJHA 1PQ0A 3IIHA 5FDRA 2VOGA 3CVAX 4BD7A 1F16A 1O0LA 2ABOA 5JSBA 2ME8A 2NL9A 4S0OA 3QBRA 5FC4A 2MHSA 2IMSA 1WSXA 2W3LA 3PK1A 2NLAA 2BIDA 4ZIIA 5C6HA 1Q59A 4HW3A 2VM6A 1AF3A 3BL2A 2M5BA 5FDOA
chains in the Genus database with same CATH superfamily
3KJ2A 1R2IA 2IMTA 4BD8A 2O21A 5KU9A 2VOIA 3MQPA 4ZIFA 3JRVA 2VVYA 3KZ0A 4BBBA 4B4SA 4HW2A 4U2UA 2UXEA 1DDBA 4D2LA 3WIYA 1OHUA 4WMRA 2LR1A 4OQ6A 4BBDA 2K7WA 3WIXA 2B48A 4OQ5A 1BXLA 2O2MA 2VVXA 4BPIA 2MEJA 1TY4A 2ROCA 1PQ1A 5C3FA 2O42A 3IHEA 3KJ0A 2KUAA 2JCNA 2K36A 4QVXA 2RODA 4D2MA 1K3KA 1R2DA 3MK8A 4BD2A 1YSGA 2JM6B 2O22A 1YSNA 4U2VA 4UF2A 4BBCA 1R2GA 3DVUA 4G35A 2VVWA 5FMIA 4QNQA 2XA0A 3KJ1A 2KBWA 1R2HA 3IO9A 2XPXA 4BPJA 4HW4A 2A5YA 1MK3A 2I39A 4UF3A 2O2NA 2PQKA 4K5BC 4ZIGA 4YJ4A 3IHCA 4MI8A 3D7VA 4ZIHA 2O2FA 2WH6A 4ZBFA 2VOFA 1G5MA 3ILCA 2YV6A 1YSIA 1R2EA 3IHDA 3I1HA 1ZY3A 1MAZA 3IIGA 4BD6A 4UF1A 4BDUA 4OYDA 4ZEQA 5IEZA 2VOHA 1G5JA 5KTGA 2BZWA 1LXLA 2JBXA 1YSWA 4ZIEA 4S0PA 5IF4A 4YK9A 2V6QA 4ZBIA 1GJHA 1PQ0A 2VTYA 3IIHA 5FDRA 3CVAX 2VOGA 4BD7A 1F16A 1O0LA 2ABOA 5JSBA 2ME8A 2NL9A 4S0OA 3QBRA 2JBYA 5FC4A 2MHSA 2IMSA 1WSXA 2W3LA 4M0SA 3PK1A 2NLAA 2BIDA 4ZIIA 4LQKA 5C6HA 1Q59A 4HW3A 2VM6A 1AF3A 3BL2A 2M5BA 5FDOA
chains in the Genus database with same CATH topology
3KJ2A 1R2IA 2IMTA 4BD8A 2O21A 5KU9A 2VOIA 3MQPA 4ZIFA 3KZ0A 4B4SA 4HW2A 4U2UA 1DDBA 3WIYA 1OHUA 4WMRA 2LR1A 4OQ6A 2K7WA 3WIXA 2B48A 4OQ5A 1BXLA 2O2MA 4BPIA 2MEJA 1TY4A 2ROCA 1PQ1A 5C3FA 3IHEA 3KJ0A 2KUAA 2JCNA 4QVXA 2RODA 1K3KA 1R2DA 3MK8A 4BD2A 1YSGA 2JM6B 2O22A 1YSNA 4U2VA 1R2GA 3DVUA 4G35A 5FMIA 4QNQA 2XA0A 3KJ1A 2KBWA 1R2HA 3IO9A 2XPXA 4BPJA 4HW4A 2A5YA 1MK3A 2O2NA 2PQKA 4K5BC 4ZIGA 4YJ4A 3IHCA 4MI8A 3D7VA 4ZIHA 2O2FA 2WH6A 4ZBFA 2VOFA 1G5MA 3ILCA 2YV6A 1YSIA 1R2EA 3IHDA 3I1HA 1ZY3A 1MAZA 3IIGA 4BD6A 4BDUA 4OYDA 4ZEQA 5IEZA 2VOHA 1G5JA 5KTGA 2BZWA 1LXLA 1YSWA 4ZIEA 4S0PA 5IF4A 4YK9A 2V6QA 4ZBIA 1GJHA 1PQ0A 3IIHA 5FDRA 2VOGA 3CVAX 4BD7A 1F16A 1O0LA 2ABOA 5JSBA 2ME8A 2NL9A 4S0OA 3QBRA 5FC4A 2MHSA 2IMSA 1WSXA 2W3LA 3PK1A 2NLAA 2BIDA 4ZIIA 5C6HA 1Q59A 4HW3A 2VM6A 1AF3A 3BL2A 2M5BA 5FDOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KJ2 A;  1R2I A;  2IMT A;  4BD8 A;  2O21 A;  5KU9 A;  2VOI A;  3MQP A;  4ZIF A;  3KZ0 A;  4B4S A;  4HW2 A;  4U2U A;  1DDB A;  3WIY A;  1OHU A;  4WMR A;  2LR1 A;  4OQ6 A;  2K7W A;  3WIX A;  2B48 A;  4OQ5 A;  1BXL A;  2O2M A;  4BPI A;  2MEJ A;  1TY4 A;  2ROC A;  1PQ1 A;  5C3F A;  3IHE A;  3KJ0 A;  2KUA A;  2JCN A;  4QVX A;  2ROD A;  1K3K A;  1R2D A;  3MK8 A;  4BD2 A;  1YSG A;  2JM6 B;  2O22 A;  1YSN A;  4U2V A;  1R2G A;  3DVU A;  4G35 A;  5FMI A;  4QNQ A;  2XA0 A;  3KJ1 A;  2KBW A;  1R2H A;  3IO9 A;  2XPX A;  4BPJ A;  4HW4 A;  2A5Y A;  1MK3 A;  2O2N A;  2PQK A;  4K5B C;  4ZIG A;  4YJ4 A;  3IHC A;  4MI8 A;  3D7V A;  4ZIH A;  2O2F A;  2WH6 A;  4ZBF A;  2VOF A;  1G5M A;  3ILC A;  2YV6 A;  1YSI A;  1R2E A;  3IHD A;  3I1H A;  1ZY3 A;  1MAZ A;  3IIG A;  4BD6 A;  4BDU A;  4OYD A;  4ZEQ A;  5IEZ A;  2VOH A;  1G5J A;  5KTG A;  2BZW A;  1LXL A;  1YSW A;  4ZIE A;  4S0P A;  5IF4 A;  4YK9 A;  2V6Q A;  4ZBI A;  1GJH A;  1PQ0 A;  3IIH A;  5FDR A;  2VOG A;  3CVA X;  4BD7 A;  1F16 A;  1O0L A;  2ABO A;  5JSB A;  2ME8 A;  2NL9 A;  4S0O A;  3QBR A;  5FC4 A;  2MHS A;  2IMS A;  1WSX A;  2W3L A;  3PK1 A;  2NLA A;  2BID A;  4ZII A;  5C6H A;  1Q59 A;  4HW3 A;  2VM6 A;  1AF3 A;  3BL2 A;  2M5B A;  5FDO A; 
#chains in the Genus database with same CATH topology
 3KJ2 A;  1R2I A;  2IMT A;  4BD8 A;  2O21 A;  5KU9 A;  2VOI A;  3MQP A;  4ZIF A;  3JRV A;  2VVY A;  3KZ0 A;  4BBB A;  4B4S A;  4HW2 A;  4U2U A;  2UXE A;  1DDB A;  4D2L A;  3WIY A;  1OHU A;  4WMR A;  2LR1 A;  4OQ6 A;  4BBD A;  2K7W A;  3WIX A;  2B48 A;  4OQ5 A;  1BXL A;  2O2M A;  2VVX A;  4BPI A;  2MEJ A;  1TY4 A;  2ROC A;  1PQ1 A;  5C3F A;  2O42 A;  3IHE A;  3KJ0 A;  2KUA A;  2JCN A;  2K36 A;  4QVX A;  2ROD A;  4D2M A;  1K3K A;  1R2D A;  3MK8 A;  4BD2 A;  1YSG A;  2JM6 B;  2O22 A;  1YSN A;  4U2V A;  4UF2 A;  4BBC A;  1R2G A;  3DVU A;  4G35 A;  2VVW A;  5FMI A;  4QNQ A;  2XA0 A;  3KJ1 A;  2KBW A;  1R2H A;  3IO9 A;  2XPX A;  4BPJ A;  4HW4 A;  2A5Y A;  1MK3 A;  2I39 A;  4UF3 A;  2O2N A;  2PQK A;  4K5B C;  4ZIG A;  4YJ4 A;  3IHC A;  4MI8 A;  3D7V A;  4ZIH A;  2O2F A;  2WH6 A;  4ZBF A;  2VOF A;  1G5M A;  3ILC A;  2YV6 A;  1YSI A;  1R2E A;  3IHD A;  3I1H A;  1ZY3 A;  1MAZ A;  3IIG A;  4BD6 A;  4UF1 A;  4BDU A;  4OYD A;  4ZEQ A;  5IEZ A;  2VOH A;  1G5J A;  5KTG A;  2BZW A;  1LXL A;  2JBX A;  1YSW A;  4ZIE A;  4S0P A;  5IF4 A;  4YK9 A;  2V6Q A;  4ZBI A;  1GJH A;  1PQ0 A;  2VTY A;  3IIH A;  5FDR A;  3CVA X;  2VOG A;  4BD7 A;  1F16 A;  1O0L A;  2ABO A;  5JSB A;  2ME8 A;  2NL9 A;  4S0O A;  3QBR A;  2JBY A;  5FC4 A;  2MHS A;  2IMS A;  1WSX A;  2W3L A;  4M0S A;  3PK1 A;  2NLA A;  2BID A;  4ZII A;  4LQK A;  5C6H A;  1Q59 A;  4HW3 A;  2VM6 A;  1AF3 A;  3BL2 A;  2M5B A;  5FDO A; 
#chains in the Genus database with same CATH homology
 3KJ2 A;  1R2I A;  2IMT A;  4BD8 A;  2O21 A;  5KU9 A;  2VOI A;  3MQP A;  4ZIF A;  3KZ0 A;  4B4S A;  4HW2 A;  4U2U A;  1DDB A;  3WIY A;  1OHU A;  4WMR A;  2LR1 A;  4OQ6 A;  2K7W A;  3WIX A;  2B48 A;  4OQ5 A;  1BXL A;  2O2M A;  4BPI A;  2MEJ A;  1TY4 A;  2ROC A;  1PQ1 A;  5C3F A;  3IHE A;  3KJ0 A;  2KUA A;  2JCN A;  4QVX A;  2ROD A;  1K3K A;  1R2D A;  3MK8 A;  4BD2 A;  1YSG A;  2JM6 B;  2O22 A;  1YSN A;  4U2V A;  1R2G A;  3DVU A;  4G35 A;  5FMI A;  4QNQ A;  2XA0 A;  3KJ1 A;  2KBW A;  1R2H A;  3IO9 A;  2XPX A;  4BPJ A;  4HW4 A;  2A5Y A;  1MK3 A;  2O2N A;  2PQK A;  4K5B C;  4ZIG A;  4YJ4 A;  3IHC A;  4MI8 A;  3D7V A;  4ZIH A;  2O2F A;  2WH6 A;  4ZBF A;  2VOF A;  1G5M A;  3ILC A;  2YV6 A;  1YSI A;  1R2E A;  3IHD A;  3I1H A;  1ZY3 A;  1MAZ A;  3IIG A;  4BD6 A;  4BDU A;  4OYD A;  4ZEQ A;  5IEZ A;  2VOH A;  1G5J A;  5KTG A;  2BZW A;  1LXL A;  1YSW A;  4ZIE A;  4S0P A;  5IF4 A;  4YK9 A;  2V6Q A;  4ZBI A;  1GJH A;  1PQ0 A;  3IIH A;  5FDR A;  2VOG A;  3CVA X;  4BD7 A;  1F16 A;  1O0L A;  2ABO A;  5JSB A;  2ME8 A;  2NL9 A;  4S0O A;  3QBR A;  5FC4 A;  2MHS A;  2IMS A;  1WSX A;  2W3L A;  3PK1 A;  2NLA A;  2BID A;  4ZII A;  5C6H A;  1Q59 A;  4HW3 A;  2VM6 A;  1AF3 A;  3BL2 A;  2M5B A;  5FDO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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