1MBUC

Crystal structure analysis of clpsn heterodimer
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
86
structure length
86
Chain Sequence
ALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords ATP-Dependent clp Protease ATP-Binding Subunit clp A
publication title Crystal Structure of the Heterodimeric Complex of the Adaptor, ClpS, with the N-domain of the AAA+ Chaperone, ClpA
pubmed doi rcsb
total genus 27
structure length 86
sequence length 86
chains with identical sequence D
ec nomenclature
pdb deposition date 2002-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 1mbuC00
1MBXC 4YJXA 1MBUC 1DD4A 4YKAA 3O2HA 3G3PA 3O1FA 3O2OA 1R6QC 1RQUA 3G19A 1LZWA 1DD3A 3GQ0A 1CTFA 1RQVA 2WA8A 3O1FB 2WA9A 4YJMA 3G1BA 3GQ1A 3GW1A 3DNJA 3O2BA 1R6OC 1RQSA 1MG9A 1MBVB 2W9RA
chains in the Genus database with same CATH superfamily
4UY8Z 3ZG0A 3O2HA 1VQMW 3W7UA 1VQPW 5HL7W 1VQKW 1KD1X 1RQUA 1Q81X 1MWTA 5DM6W 3GQ0A 1VQNW 5M19A 1VQOW 4IOCW 1YITW 3W7WA 5GAGa 3DLLW 5CA3A 2QA4W 1NJIX 3CCSW 3ZG5A 5GW7A 1W2BV 1VQ6W 4CPKA 2ZJQW 4U67W 1VQ9W 1Q82X 4BL3A 4YJXA 1MWUA 3W7TA 1K8AX 5JVGW 5M1AA 3G19A 1LZWA 2QEXW 1DD3A 3PIOW 3CCMW 3CD6W 1CTFA 4BL2A 3CXCV 3CCUW 3O1FB 3D3IA 3CMEW 5JVHW 1K9MX 3CC4W 1YI2W 3G1BA 3DNJA 1VQ8W 1KC8X 3CCLW 3O2BA 1R6OC 4DKIA 1MBVB 3ZFZA 1KQSV 1VQ4W 1YJWW 1QVFV 1VQ7W 1MBXC 1S72W 3CF5W 3G71W 1DD4A 3G4SW 3O1FA 1R6QC 4WF9W 3I56W 3CCEW 3J7ZZ 1YIJW 1M90X 1MWRA 1Q86X 1QVGV 1RQVA 3CCVW 3PIPW 4WCEW 2ZJPW 1VQQA 1YHQW 5GAEa 2WA9A 4YJMA 4IO9W 3GQ1A 3I55W 3GW1A 4CJNA 1JJ2V 3W7XA 2OTJW 3CCRW 1RQSA 5M18A 4WFBW 3CCJW 3G3PA 1VQ5W 3CPWV 1MBUC 3G6EW 4IOAW 4YKAA 1MWSA 3W7SA 1VQLW 3O2OA 4WFAW 2OTLW 3CMAW 1Q7YX 3CCQW 1N8RX 3CC7W 1BXYA 1M1KX 2WA8A 1YJ9W 2ZJRW 3CC2W 5GAHa 3OW2V 1K73X 1YJNW 4WFNW 5DM7W 1MG9A 2W9RA 5GADa
chains in the Genus database with same CATH topology
1MBXC 4YJXA 1MBUC 1DD4A 4YKAA 3O2HA 3G3PA 3O1FA 3O2OA 1R6QC 1RQUA 3G19A 1LZWA 1DD3A 3GQ0A 1CTFA 1RQVA 2WA8A 3O1FB 2WA9A 4YJMA 3G1BA 3GQ1A 3GW1A 3DNJA 3O2BA 1R6OC 1RQSA 1MG9A 1MBVB 2W9RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MBX C;  4YJX A;  1MBU C;  1DD4 A;  4YKA A;  3O2H A;  3G3P A;  3O1F A;  3O2O A;  1R6Q C;  1RQU A;  3G19 A;  1LZW A;  1DD3 A;  3GQ0 A;  1CTF A;  1RQV A;  2WA8 A;  3O1F B;  2WA9 A;  4YJM A;  3G1B A;  3GQ1 A;  3GW1 A;  3DNJ A;  3O2B A;  1R6O C;  1RQS A;  1MG9 A;  1MBV B;  2W9R A; 
#chains in the Genus database with same CATH topology
 4UY8 Z;  3ZG0 A;  3O2H A;  1VQM W;  3W7U A;  1VQP W;  5HL7 W;  1VQK W;  1KD1 X;  1RQU A;  1Q81 X;  1MWT A;  5DM6 W;  3GQ0 A;  1VQN W;  5M19 A;  1VQO W;  4IOC W;  1YIT W;  3W7W A;  5GAG a;  3DLL W;  5CA3 A;  2QA4 W;  1NJI X;  3CCS W;  3ZG5 A;  5GW7 A;  1W2B V;  1VQ6 W;  4CPK A;  2ZJQ W;  4U67 W;  1VQ9 W;  1Q82 X;  4BL3 A;  4YJX A;  1MWU A;  3W7T A;  1K8A X;  5JVG W;  5M1A A;  3G19 A;  1LZW A;  2QEX W;  1DD3 A;  3PIO W;  3CCM W;  3CD6 W;  1CTF A;  4BL2 A;  3CXC V;  3CCU W;  3O1F B;  3D3I A;  3CME W;  5JVH W;  1K9M X;  3CC4 W;  1YI2 W;  3G1B A;  3DNJ A;  1VQ8 W;  1KC8 X;  3CCL W;  3O2B A;  1R6O C;  4DKI A;  1MBV B;  3ZFZ A;  1KQS V;  1VQ4 W;  1YJW W;  1QVF V;  1VQ7 W;  1MBX C;  1S72 W;  3CF5 W;  3G71 W;  1DD4 A;  3G4S W;  3O1F A;  1R6Q C;  4WF9 W;  3I56 W;  3CCE W;  3J7Z Z;  1YIJ W;  1M90 X;  1MWR A;  1Q86 X;  1QVG V;  1RQV A;  3CCV W;  3PIP W;  4WCE W;  2ZJP W;  1VQQ A;  1YHQ W;  5GAE a;  2WA9 A;  4YJM A;  4IO9 W;  3GQ1 A;  3I55 W;  3GW1 A;  4CJN A;  1JJ2 V;  3W7X A;  2OTJ W;  3CCR W;  1RQS A;  5M18 A;  4WFB W;  3CCJ W;  3G3P A;  1VQ5 W;  3CPW V;  1MBU C;  3G6E W;  4IOA W;  4YKA A;  1MWS A;  3W7S A;  1VQL W;  3O2O A;  4WFA W;  2OTL W;  3CMA W;  1Q7Y X;  3CCQ W;  1N8R X;  3CC7 W;  1BXY A;  1M1K X;  2WA8 A;  1YJ9 W;  2ZJR W;  3CC2 W;  5GAH a;  3OW2 V;  1K73 X;  1YJN W;  4WFN W;  5DM7 W;  1MG9 A;  2W9R A;  5GAD a; 
#chains in the Genus database with same CATH homology
 1MBX C;  4YJX A;  1MBU C;  1DD4 A;  4YKA A;  3O2H A;  3G3P A;  3O1F A;  3O2O A;  1R6Q C;  1RQU A;  3G19 A;  1LZW A;  1DD3 A;  3GQ0 A;  1CTF A;  1RQV A;  2WA8 A;  3O1F B;  2WA9 A;  4YJM A;  3G1B A;  3GQ1 A;  3GW1 A;  3DNJ A;  3O2B A;  1R6O C;  1RQS A;  1MG9 A;  1MBV B;  2W9R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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