1MBXA

Crystal structure analysis of clpsn with transition metal ion bound
Total Genus 55
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
142
structure length
142
Chain Sequence
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Protein binding
molecule keywords ATP-Dependent clp Protease ATP-Binding Subunit clp A
publication title Crystal Structure of the Heterodimeric Complex of the Adaptor, ClpS, with the N-domain of the AAA+ Chaperone, ClpA
pubmed doi rcsb
source organism Escherichia coli
total genus 55
structure length 142
sequence length 142
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02861 Clp_N Clp amino terminal domain, pathogenicity island component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1780.10 Mainly Alpha Orthogonal Bundle Double Clp-N motif Clp, N-terminal domain 1mbxA00
4IRFA 3WDEA 4HH6A 1MBVA 1MBUA 1QVRA 3WDDA 3FESA 1KSFX 4UQWA 3FH2A 1R6QA 4Y0BA 3PXGA 1R6BX 3ZRJA 3WDCA 1MG9B 1KHYA 4HH5A 1R6CX 1R6OA 1LZWB 5GUIA 2Y1QA 5HBNA 4IODA 3WDBA 1K6KA 4P15A 2K77A 4Y0CA 3ZRIA 2Y1RA 1MBXA
chains in the Genus database with same CATH superfamily
4IRFA 3WDEA 4HH6A 1MBVA 1MBUA 1QVRA 3WDDA 3FESA 1KSFX 4UQWA 3FH2A 1R6QA 4Y0BA 3PXGA 1R6BX 3ZRJA 3WDCA 1MG9B 1KHYA 4HH5A 1R6CX 1R6OA 1LZWB 5GUIA 2Y1QA 5HBNA 4IODA 3WDBA 1K6KA 4P15A 2K77A 4Y0CA 3ZRIA 2Y1RA 1MBXA
chains in the Genus database with same CATH topology
4IRFA 3WDEA 4HH6A 1MBVA 1MBUA 1QVRA 3WDDA 3FESA 1KSFX 4UQWA 3FH2A 1R6QA 4Y0BA 3PXGA 1R6BX 3ZRJA 3WDCA 1MG9B 1KHYA 4HH5A 1R6CX 1R6OA 1LZWB 5GUIA 2Y1QA 5HBNA 4IODA 3WDBA 1K6KA 4P15A 2K77A 4Y0CA 3ZRIA 2Y1RA 1MBXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IRF A;  3WDE A;  4HH6 A;  1MBV A;  1MBU A;  1QVR A;  3WDD A;  3FES A;  1KSF X;  4UQW A;  3FH2 A;  1R6Q A;  4Y0B A;  3PXG A;  1R6B X;  3ZRJ A;  3WDC A;  1MG9 B;  1KHY A;  4HH5 A;  1R6C X;  1R6O A;  1LZW B;  5GUI A;  2Y1Q A;  5HBN A;  4IOD A;  3WDB A;  1K6K A;  4P15 A;  2K77 A;  4Y0C A;  3ZRI A;  2Y1R A;  1MBX A; 
#chains in the Genus database with same CATH topology
 4IRF A;  3WDE A;  4HH6 A;  1MBV A;  1MBU A;  1QVR A;  3WDD A;  3FES A;  1KSF X;  4UQW A;  3FH2 A;  1R6Q A;  4Y0B A;  3PXG A;  1R6B X;  3ZRJ A;  3WDC A;  1MG9 B;  1KHY A;  4HH5 A;  1R6C X;  1R6O A;  1LZW B;  5GUI A;  2Y1Q A;  5HBN A;  4IOD A;  3WDB A;  1K6K A;  4P15 A;  2K77 A;  4Y0C A;  3ZRI A;  2Y1R A;  1MBX A; 
#chains in the Genus database with same CATH homology
 4IRF A;  3WDE A;  4HH6 A;  1MBV A;  1MBU A;  1QVR A;  3WDD A;  3FES A;  1KSF X;  4UQW A;  3FH2 A;  1R6Q A;  4Y0B A;  3PXG A;  1R6B X;  3ZRJ A;  3WDC A;  1MG9 B;  1KHY A;  4HH5 A;  1R6C X;  1R6O A;  1LZW B;  5GUI A;  2Y1Q A;  5HBN A;  4IOD A;  3WDB A;  1K6K A;  4P15 A;  2K77 A;  4Y0C A;  3ZRI A;  2Y1R A;  1MBX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...