1MDAL

Crystal structure of an electron-transfer complex between methylamine dehydrogenase and amicyanin
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
121
structure length
120
Chain Sequence
VDPRAKWQPQDNDIQACDYWRHCSIAGNICDCSAGSLTSCPPGTLVASGSVGSCYNPPDPNKYITAYRDCCGYNVSGRCACLNTEGELPVYNKDANDIIWCFGGEDGMTYHCSISPVSGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
source organism Paracoccus denitrificans
publication title Crystal structure of an electron-transfer complex between methylamine dehydrogenase and amicyanin.
pubmed doi rcsb
molecule keywords METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT)
total genus 26
structure length 120
sequence length 121
chains with identical sequence M
ec nomenclature ec 1.4.99.3: Transferred entry: 1.4.9.1.
pdb deposition date 1992-03-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 1mdaL00
2H47B 2IUPD 4L1QC 2OIZD 3L4OC 1MAFL 4FB1C 2HKRD 3L4MC 3PXSC 3PXTC 4L3HC 1MAEL 3SJLC 3C75L 3SLEC 2GC4B 2OK4D 2H3XB 3SXTC 2OK6D 3RLMC 4FA9C 2MADL 2MTAL 2IURD 2IUQD 3RN0C 2Q7QD 2AGZD 1MG3B 2J55L 4O1QC 2IUVD 3ORVC 3SWSC 2BBKL 2AGLD 1MDAL 3RN1C 4FA1C 4FANC 2HJBD 2I0RD 2I0SD 2GC7B 2HKMD 2AGWD 2J57K 2IAAB 4Y5RC 2HXCD 2J56L 2AH1D 2AH0D 3PXWC 2OJYD 4FAVC 2AGYD 2I0TD 2HJ4D 4FA4C 3RMZC 4FA5C 2AGXD 4L3GC 3SVWC 1MG2B 4K3IC
chains in the Genus database with same CATH superfamily
2H47B 2IUPD 4L1QC 2OIZD 3L4OC 1MAFL 4FB1C 2HKRD 3L4MC 3PXSC 3PXTC 4L3HC 1MAEL 3SJLC 3C75L 3SLEC 2GC4B 2OK4D 2H3XB 3SXTC 2OK6D 3RLMC 4FA9C 2MADL 2MTAL 2IURD 2IUQD 3RN0C 2Q7QD 2AGZD 1MG3B 2J55L 4O1QC 2IUVD 3ORVC 3SWSC 2BBKL 2AGLD 1MDAL 3RN1C 4FA1C 4FANC 2HJBD 2I0RD 2I0SD 2GC7B 2HKMD 2AGWD 2J57K 2IAAB 4Y5RC 2HXCD 2J56L 2AH1D 2AH0D 3PXWC 2OJYD 4FAVC 2AGYD 2I0TD 2HJ4D 4FA4C 3RMZC 4FA5C 2AGXD 4L3GC 3SVWC 1MG2B 4K3IC
chains in the Genus database with same CATH topology
2H47B 2IUPD 4L1QC 2OIZD 3L4OC 1MAFL 4FB1C 2HKRD 3L4MC 3PXSC 3PXTC 4L3HC 1MAEL 3SJLC 3C75L 3SLEC 2GC4B 2OK4D 2H3XB 3SXTC 2OK6D 3RLMC 4FA9C 2MADL 2MTAL 2IURD 2IUQD 3RN0C 2Q7QD 2AGZD 1MG3B 2J55L 4O1QC 2IUVD 3ORVC 3SWSC 2BBKL 2AGLD 1MDAL 3RN1C 4FA1C 4FANC 2HJBD 2I0RD 2I0SD 2GC7B 2HKMD 2AGWD 2J57K 2IAAB 4Y5RC 2HXCD 2J56L 2AH1D 2AH0D 3PXWC 2OJYD 4FAVC 2AGYD 2I0TD 2HJ4D 4FA4C 3RMZC 4FA5C 2AGXD 4L3GC 3SVWC 1MG2B 4K3IC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H47 B;  2IUP D;  4L1Q C;  2OIZ D;  3L4O C;  1MAF L;  4FB1 C;  2HKR D;  3L4M C;  3PXS C;  3PXT C;  4L3H C;  1MAE L;  3SJL C;  3C75 L;  3SLE C;  2GC4 B;  2OK4 D;  2H3X B;  3SXT C;  2OK6 D;  3RLM C;  4FA9 C;  2MAD L;  2MTA L;  2IUR D;  2IUQ D;  3RN0 C;  2Q7Q D;  2AGZ D;  1MG3 B;  2J55 L;  4O1Q C;  2IUV D;  3ORV C;  3SWS C;  2BBK L;  2AGL D;  1MDA L;  3RN1 C;  4FA1 C;  4FAN C;  2HJB D;  2I0R D;  2I0S D;  2GC7 B;  2HKM D;  2AGW D;  2J57 K;  2IAA B;  4Y5R C;  2HXC D;  2J56 L;  2AH1 D;  2AH0 D;  3PXW C;  2OJY D;  4FAV C;  2AGY D;  2I0T D;  2HJ4 D;  4FA4 C;  3RMZ C;  4FA5 C;  2AGX D;  4L3G C;  3SVW C;  1MG2 B;  4K3I C; 
#chains in the Genus database with same CATH topology
 2H47 B;  2IUP D;  4L1Q C;  2OIZ D;  3L4O C;  1MAF L;  4FB1 C;  2HKR D;  3L4M C;  3PXS C;  3PXT C;  4L3H C;  1MAE L;  3SJL C;  3C75 L;  3SLE C;  2GC4 B;  2OK4 D;  2H3X B;  3SXT C;  2OK6 D;  3RLM C;  4FA9 C;  2MAD L;  2MTA L;  2IUR D;  2IUQ D;  3RN0 C;  2Q7Q D;  2AGZ D;  1MG3 B;  2J55 L;  4O1Q C;  2IUV D;  3ORV C;  3SWS C;  2BBK L;  2AGL D;  1MDA L;  3RN1 C;  4FA1 C;  4FAN C;  2HJB D;  2I0R D;  2I0S D;  2GC7 B;  2HKM D;  2AGW D;  2J57 K;  2IAA B;  4Y5R C;  2HXC D;  2J56 L;  2AH1 D;  2AH0 D;  3PXW C;  2OJY D;  4FAV C;  2AGY D;  2I0T D;  2HJ4 D;  4FA4 C;  3RMZ C;  4FA5 C;  2AGX D;  4L3G C;  3SVW C;  1MG2 B;  4K3I C; 
#chains in the Genus database with same CATH homology
 2H47 B;  2IUP D;  4L1Q C;  2OIZ D;  3L4O C;  1MAF L;  4FB1 C;  2HKR D;  3L4M C;  3PXS C;  3PXT C;  4L3H C;  1MAE L;  3SJL C;  3C75 L;  3SLE C;  2GC4 B;  2OK4 D;  2H3X B;  3SXT C;  2OK6 D;  3RLM C;  4FA9 C;  2MAD L;  2MTA L;  2IUR D;  2IUQ D;  3RN0 C;  2Q7Q D;  2AGZ D;  1MG3 B;  2J55 L;  4O1Q C;  2IUV D;  3ORV C;  3SWS C;  2BBK L;  2AGL D;  1MDA L;  3RN1 C;  4FA1 C;  4FAN C;  2HJB D;  2I0R D;  2I0S D;  2GC7 B;  2HKM D;  2AGW D;  2J57 K;  2IAA B;  4Y5R C;  2HXC D;  2J56 L;  2AH1 D;  2AH0 D;  3PXW C;  2OJY D;  4FAV C;  2AGY D;  2I0T D;  2HJ4 D;  4FA4 C;  3RMZ C;  4FA5 C;  2AGX D;  4L3G C;  3SVW C;  1MG2 B;  4K3I C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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