1MDUA

Crystal structure of the chicken actin trimer complexed with human gelsolin segment 1 (gs-1)
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
124
structure length
124
Chain Sequence
VVEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords gelsolin precursor
publication title Structure of an F-actin trimer disrupted by gelsolin and implications for the mechanism of severing
pubmed doi rcsb
source organism Homo sapiens
total genus 39
structure length 124
sequence length 124
chains with identical sequence D
ec nomenclature
pdb deposition date 2002-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1mduA00
3FG6A 1ESVS 3CJBG 1T3XA 1CNUA 1SVQA 2MOTA 1Q8XA 5KYUB 2NUPB 1T3YA 1WNJA 2FF6G 1M2VB 2HD7A 2LLFA 1V6FA 2VIKA 1AK6A 1PCXA 5KYXB 1SVYA 3EGXA 3A5NS 2I2QA 1VFQA 2FH2A 3CI5G 1NPHA 1PD0A 5DD2A 3EG9B 5HVKB 5KYWB 3CIPG 2MV2A 1P8XA 2QTVA 4Z94G 1EQYS 2D8BA 2FGHA 4JD2H 3A5LS 2NUTA 3L50A 1AK7A 3A5MS 4KEDA 3EGDA 1NLVG 4CBXG 5KYYA 1DEJS 1D4XG 1HQZ1 1F7SA 1NM1G 5IVUA 4PKHB 1YVNG 3EFOA 4PKIG 4LIZA 2FH4A 2L72A 1WFSA 2LXXA 1T2LA 1H1VG 2VILA 2FH1A 4CBWG 4S10C 4KEFA 2MP4A 1M2VA 4CBUG 1NMDG 1X67A 1M2OA 5KYXA 1TVJA 2XFAA 4PKGG 2FF3A 5KYWA 1Q8GA 1UDMA 1J72A 2VACA 1TMWA 1AHQA 1T44G 2KVKA 3FG7A 3EH1A 3EGXB 3EFOB 1COFA 2FH3A 5FAEA 5KYUA 4KEEA 2NUPA 2W0IA 2LJ8A 3DAWB 3TU5B 5FAFA 1QPVA 1C0FS 1P8ZG 4BEX1 2XF1A 1CFYA 1VKKA 1MDUA 2NUTB 1D0NA 3EG9A 1WM4A 1RGIG 3A5OS 3Q2BA 3FFKA 5HVKD 3FFNA 3EGDB 1SVRA 1YAGG 3CJCG 5KYYB 5KYNA 1C0GS 1KCQA 5L6WC 3EH2A 1PD1A 5A1MA 1JHWA 1M4JA
chains in the Genus database with same CATH superfamily
3FG6A 1ESVS 3CJBG 1T3XA 1CNUA 1SVQA 2MOTA 1Q8XA 5KYUB 2NUPB 1T3YA 1WNJA 2FF6G 1M2VB 2HD7A 2LLFA 1V6FA 2VIKA 1AK6A 1PCXA 5KYXB 1SVYA 3EGXA 3A5NS 2I2QA 1VFQA 2FH2A 3CI5G 1NPHA 1PD0A 5DD2A 3EG9B 5HVKB 5KYWB 3CIPG 2MV2A 1P8XA 2QTVA 4Z94G 1EQYS 2D8BA 2FGHA 4JD2H 3A5LS 2NUTA 3DA7A 3L50A 1AK7A 3A5MS 4KEDA 3EGDA 1NLVG 4CBXG 5KYYA 1DEJS 1D4XG 1HQZ1 1F7SA 1NM1G 5IVUA 4PKHB 1YVNG 3EFOA 4PKIG 4LIZA 2FH4A 2L72A 1WFSA 2LXXA 1T2LA 1H1VG 2VILA 2FH1A 4CBWG 4S10C 4KEFA 2MP4A 1M2VA 4CBUG 1NMDG 1X67A 1M2OA 5KYXA 1TVJA 2XFAA 4PKGG 2FF3A 5KYWA 1Q8GA 1UDMA 1J72A 2VACA 1TMWA 1AHQA 1T44G 2KVKA 3FG7A 3EH1A 3EGXB 3EFOB 1COFA 2FH3A 5FAEA 5KYUA 4KEEA 2NUPA 2W0IA 2LJ8A 3DAWB 3TU5B 5FAFA 1QPVA 1C0FS 1P8ZG 4BEX1 2XF1A 1CFYA 1VKKA 1MDUA 2NUTB 1D0NA 3EG9A 1WM4A 1RGIG 3A5OS 3Q2BA 3FFKA 5HVKD 3FFNA 3EGDB 1SVRA 1YAGG 3CJCG 5KYYB 5KYNA 1C0GS 1KCQA 5L6WC 3EH2A 1PD1A 5A1MA 1JHWA 1M4JA
chains in the Genus database with same CATH topology
3FG6A 1ESVS 3CJBG 1T3XA 1CNUA 1SVQA 2MOTA 1Q8XA 5KYUB 2NUPB 1T3YA 1WNJA 2FF6G 1M2VB 2HD7A 2LLFA 1V6FA 2VIKA 1AK6A 1PCXA 5KYXB 1SVYA 3EGXA 3A5NS 2I2QA 1VFQA 2FH2A 3CI5G 1NPHA 1PD0A 5DD2A 3EG9B 5HVKB 5KYWB 3CIPG 2MV2A 1P8XA 2QTVA 4Z94G 1EQYS 2D8BA 2FGHA 4JD2H 3A5LS 2NUTA 3DA7A 3L50A 1AK7A 3A5MS 4KEDA 3EGDA 1NLVG 4CBXG 5KYYA 1DEJS 1D4XG 1HQZ1 1F7SA 1NM1G 5IVUA 4PKHB 1YVNG 3EFOA 4PKIG 4LIZA 2FH4A 2L72A 1WFSA 2LXXA 1T2LA 1H1VG 2VILA 2FH1A 4CBWG 4S10C 4KEFA 2MP4A 1M2VA 4CBUG 1NMDG 1X67A 1M2OA 5KYXA 1TVJA 2XFAA 4PKGG 2FF3A 5KYWA 1Q8GA 1UDMA 1J72A 2VACA 1TMWA 1AHQA 1T44G 2KVKA 3FG7A 3EH1A 3EGXB 3EFOB 1COFA 2FH3A 5FAEA 5KYUA 4KEEA 2NUPA 2W0IA 2LJ8A 3DAWB 3TU5B 5FAFA 1QPVA 1C0FS 1P8ZG 4BEX1 2XF1A 1CFYA 1VKKA 1MDUA 2NUTB 1D0NA 3EG9A 1WM4A 1RGIG 3A5OS 3Q2BA 3FFKA 5HVKD 3FFNA 3EGDB 1SVRA 1YAGG 3CJCG 5KYYB 5KYNA 1C0GS 1KCQA 5L6WC 3EH2A 1PD1A 5A1MA 1JHWA 1M4JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FG6 A;  1ESV S;  3CJB G;  1T3X A;  1CNU A;  1SVQ A;  2MOT A;  1Q8X A;  5KYU B;  2NUP B;  1T3Y A;  1WNJ A;  2FF6 G;  1M2V B;  2HD7 A;  2LLF A;  1V6F A;  2VIK A;  1AK6 A;  1PCX A;  5KYX B;  1SVY A;  3EGX A;  3A5N S;  2I2Q A;  1VFQ A;  2FH2 A;  3CI5 G;  1NPH A;  1PD0 A;  5DD2 A;  3EG9 B;  5HVK B;  5KYW B;  3CIP G;  2MV2 A;  1P8X A;  2QTV A;  4Z94 G;  1EQY S;  2D8B A;  2FGH A;  4JD2 H;  3A5L S;  2NUT A;  3L50 A;  1AK7 A;  3A5M S;  4KED A;  3EGD A;  1NLV G;  4CBX G;  5KYY A;  1DEJ S;  1D4X G;  1HQZ 1;  1F7S A;  1NM1 G;  5IVU A;  4PKH B;  1YVN G;  3EFO A;  4PKI G;  4LIZ A;  2FH4 A;  2L72 A;  1WFS A;  2LXX A;  1T2L A;  1H1V G;  2VIL A;  2FH1 A;  4CBW G;  4S10 C;  4KEF A;  2MP4 A;  1M2V A;  4CBU G;  1NMD G;  1X67 A;  1M2O A;  5KYX A;  1TVJ A;  2XFA A;  4PKG G;  2FF3 A;  5KYW A;  1Q8G A;  1UDM A;  1J72 A;  2VAC A;  1TMW A;  1AHQ A;  1T44 G;  2KVK A;  3FG7 A;  3EH1 A;  3EGX B;  3EFO B;  1COF A;  2FH3 A;  5FAE A;  5KYU A;  4KEE A;  2NUP A;  2W0I A;  2LJ8 A;  3DAW B;  3TU5 B;  5FAF A;  1QPV A;  1C0F S;  1P8Z G;  4BEX 1;  2XF1 A;  1CFY A;  1VKK A;  1MDU A;  2NUT B;  1D0N A;  3EG9 A;  1WM4 A;  1RGI G;  3A5O S;  3Q2B A;  3FFK A;  5HVK D;  3FFN A;  3EGD B;  1SVR A;  1YAG G;  3CJC G;  5KYY B;  5KYN A;  1C0G S;  1KCQ A;  5L6W C;  3EH2 A;  1PD1 A;  5A1M A;  1JHW A;  1M4J A; 
#chains in the Genus database with same CATH topology
 3FG6 A;  1ESV S;  3CJB G;  1T3X A;  1CNU A;  1SVQ A;  2MOT A;  1Q8X A;  5KYU B;  2NUP B;  1T3Y A;  1WNJ A;  2FF6 G;  1M2V B;  2HD7 A;  2LLF A;  1V6F A;  2VIK A;  1AK6 A;  1PCX A;  5KYX B;  1SVY A;  3EGX A;  3A5N S;  2I2Q A;  1VFQ A;  2FH2 A;  3CI5 G;  1NPH A;  1PD0 A;  5DD2 A;  3EG9 B;  5HVK B;  5KYW B;  3CIP G;  2MV2 A;  1P8X A;  2QTV A;  4Z94 G;  1EQY S;  2D8B A;  2FGH A;  4JD2 H;  3A5L S;  2NUT A;  3DA7 A;  3L50 A;  1AK7 A;  3A5M S;  4KED A;  3EGD A;  1NLV G;  4CBX G;  5KYY A;  1DEJ S;  1D4X G;  1HQZ 1;  1F7S A;  1NM1 G;  5IVU A;  4PKH B;  1YVN G;  3EFO A;  4PKI G;  4LIZ A;  2FH4 A;  2L72 A;  1WFS A;  2LXX A;  1T2L A;  1H1V G;  2VIL A;  2FH1 A;  4CBW G;  4S10 C;  4KEF A;  2MP4 A;  1M2V A;  4CBU G;  1NMD G;  1X67 A;  1M2O A;  5KYX A;  1TVJ A;  2XFA A;  4PKG G;  2FF3 A;  5KYW A;  1Q8G A;  1UDM A;  1J72 A;  2VAC A;  1TMW A;  1AHQ A;  1T44 G;  2KVK A;  3FG7 A;  3EH1 A;  3EGX B;  3EFO B;  1COF A;  2FH3 A;  5FAE A;  5KYU A;  4KEE A;  2NUP A;  2W0I A;  2LJ8 A;  3DAW B;  3TU5 B;  5FAF A;  1QPV A;  1C0F S;  1P8Z G;  4BEX 1;  2XF1 A;  1CFY A;  1VKK A;  1MDU A;  2NUT B;  1D0N A;  3EG9 A;  1WM4 A;  1RGI G;  3A5O S;  3Q2B A;  3FFK A;  5HVK D;  3FFN A;  3EGD B;  1SVR A;  1YAG G;  3CJC G;  5KYY B;  5KYN A;  1C0G S;  1KCQ A;  5L6W C;  3EH2 A;  1PD1 A;  5A1M A;  1JHW A;  1M4J A; 
#chains in the Genus database with same CATH homology
 3FG6 A;  1ESV S;  3CJB G;  1T3X A;  1CNU A;  1SVQ A;  2MOT A;  1Q8X A;  5KYU B;  2NUP B;  1T3Y A;  1WNJ A;  2FF6 G;  1M2V B;  2HD7 A;  2LLF A;  1V6F A;  2VIK A;  1AK6 A;  1PCX A;  5KYX B;  1SVY A;  3EGX A;  3A5N S;  2I2Q A;  1VFQ A;  2FH2 A;  3CI5 G;  1NPH A;  1PD0 A;  5DD2 A;  3EG9 B;  5HVK B;  5KYW B;  3CIP G;  2MV2 A;  1P8X A;  2QTV A;  4Z94 G;  1EQY S;  2D8B A;  2FGH A;  4JD2 H;  3A5L S;  2NUT A;  3DA7 A;  3L50 A;  1AK7 A;  3A5M S;  4KED A;  3EGD A;  1NLV G;  4CBX G;  5KYY A;  1DEJ S;  1D4X G;  1HQZ 1;  1F7S A;  1NM1 G;  5IVU A;  4PKH B;  1YVN G;  3EFO A;  4PKI G;  4LIZ A;  2FH4 A;  2L72 A;  1WFS A;  2LXX A;  1T2L A;  1H1V G;  2VIL A;  2FH1 A;  4CBW G;  4S10 C;  4KEF A;  2MP4 A;  1M2V A;  4CBU G;  1NMD G;  1X67 A;  1M2O A;  5KYX A;  1TVJ A;  2XFA A;  4PKG G;  2FF3 A;  5KYW A;  1Q8G A;  1UDM A;  1J72 A;  2VAC A;  1TMW A;  1AHQ A;  1T44 G;  2KVK A;  3FG7 A;  3EH1 A;  3EGX B;  3EFO B;  1COF A;  2FH3 A;  5FAE A;  5KYU A;  4KEE A;  2NUP A;  2W0I A;  2LJ8 A;  3DAW B;  3TU5 B;  5FAF A;  1QPV A;  1C0F S;  1P8Z G;  4BEX 1;  2XF1 A;  1CFY A;  1VKK A;  1MDU A;  2NUT B;  1D0N A;  3EG9 A;  1WM4 A;  1RGI G;  3A5O S;  3Q2B A;  3FFK A;  5HVK D;  3FFN A;  3EGD B;  1SVR A;  1YAG G;  3CJC G;  5KYY B;  5KYN A;  1C0G S;  1KCQ A;  5L6W C;  3EH2 A;  1PD1 A;  5A1M A;  1JHW A;  1M4J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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