1MFQC

Crystal structure analysis of a ternary s-domain complex of human signal recognition particle
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
116
structure length
108
Chain Sequence
KHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein/rna
molecule keywords 7S RNA of human SRP
publication title Induced structural changes of 7SL RNA during the assembly of human signal recognition particle
pubmed doi rcsb
source organism Homo sapiens
total genus 32
structure length 108
sequence length 116
ec nomenclature
pdb deposition date 2002-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02978 SRP_SPB Signal peptide binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 1mfqC00
2PXLA 2XXAA 2PXKA 5GAHi 2PXVA 3KL4A 2PXTA 2JQEA 2PXBA 2PXEA 2V3CC 3DM5A 3LQXA 2PXUA 2PXPA 1QB2A 1MFQC 2PXQA 2PXFA 1DULA 3NDBB 2FFHA 1HQ1A 2PXDA 5GAGi 1QZXA
chains in the Genus database with same CATH superfamily
4X4BA 1R69A 2IU7A 2LLWA 1ZZBA 1QQBA 1ADRA 3D1NI 2XXPA 3QOXA 2AXVA 4I6UA 1EFAA 5A7LA 1X57A 1QQAA 3DNVB 5DRTA 4ER3A 2WIUB 4EZIA 2AWIA 4Z5DA 2A6CA 3F52A 1PRVA 4X4HA 2OR1L 3JXBC 2J7UA 2XXQA 2HFZA 2EF8A 4YARA 1ZZ8A 1OCTC 1CJGA 4F8DA 3GZDA 3SCHA 1S7EA 2PUCA 2GRMA 3OMTA 3ZKCA 5DTRA 3GBFA 3A9ZA 2LCVA 3PE5A 3VWSA 2ICPA 4J1XA 5DRYA 3NDBB 3UWPA 5DTQA 1RZSA 3GZDC 4Z5CA 1L1MA 2LYJA 4X4GA 3VK0A 2O49A 2PXLA 4IVZA 4ER5A 1RZRD 2R63A 3GUUA 1ZUGA 5DSXA 2JCGA 3F51A 3NXHA 2PXBA 1R63A 2PXPA 2LYSA 5JUWA 2KEIA 4FN3A 2HCNA 1ZZ7A 4X4EA 1X2LA 2XXAA 1ZZ6A 4O8BA 4Z5HA 2PPXA 3QOWA 3BDNA 3QF3A 1QPZA 2EBYA 2XIUA 4Q2JA 3PXPA 2HINA 2VEOA 2IV1A 2IUOA 2KZ8A 1DULA 1ZZCA 3QQ6A 3JXCL 2AW6A 4YG7B 3LFPA 2ODRD 4X4DA 1UXCA 3SCGA 1RZRA 2FJRA 3FYAA 2L8NA 4X4FA 1RIOA 3KL4A 3OWQA 1UXDA 2PXUA 3HZIB 2M4HA 2HCSA 3FYMA 3KJXA 3SX0A 1VPWA 4ER0A 1JFTA 2GRLA 4I6TA 3TEPA 2D5VA 4JCXA 1PRUA 2GZUA 3GZCA 3MLFA 2PXTA 2PUDA 3R09A 3OQMA 3TRBA 2BNMA 1WETA 2H8RA 1OSLA 2LLVA 4EQZA 1UTXA 4X4IA 2PXDA 3ZPXA 2IVBA 2L49A 3G5GA 5GAGi 4FBIA 3BS3A 4GHJA 3A9XA 4MCXA 1Y9QA 4NDWA 4GQMA 5DTMA 2EWTA 3FMYA 3G7DA 4ER7A 4YG4A 3OP9A 1E3OC 2LYKA 4Y42A 2V3CC 3LQXA 1BDHA 4PU4C 2XI8A 4HRAA 1NERA 3M9LA 2AXZA 1JFSA 1HF0A 3UFDA 3KXAA 3SCFA 4OBMA 2R1JL 1WH6A 2CSFA 3NROA 5GAHi 3B7HA 3JXDL 5DT2A 2PXEA 2MQKA 4ER6A 1QP4A 2KEKA 4WVLA 4IA8A 4MCTA 3TELA 3QFIA 1AU7A 2L1PA 2B5AA 4DE9A 4EKIA 4PU7A 3MEJA 1JH9A 1ZVVA 3IVPA 2PIJA 2PUGA 1PERL 3TFLA 3ZHIA 1LMB3 2KPJA 3SR4A 2LYQA 3F6WA 3GN5B 2JQEA 1BDIA 3OQNA 1QB2A 1ZAYA 3ME5A 2ICTA 2J7WA 2PUEA 3ZHMA 1QP7A 1YSEA 1ZZ9A 4J1WA 2IVQA 3L1PA 4OB4A 2O4AA 2XJ3A 2PXVA 4Z58A 3H5TA 1MFQC 2BJCA 2PXFA 3R1FA 1HQ1A 1U2ZA 2WUSR 1ZPQA 4I8TA 1LCDA 4EKGA 1NEQA 4YBAA 2OFYA 2PUBA 1Y7YA 1POUA 4EK9A 3OKZA 2LYRA 2MEZA 1WH8A 3CROL 2PXQA 4JCYA 2MXDA 3CLCA 1B0NA 3KZ3A 1QZXA 3A9YA 2BNNA 4IWRA 1DWKA 3EUSA 4DE8A 4PU3C 3G0TA 1ZS4A 2PE5A 4I6RA 1GT0C 2AUWA 1QP0A 2PUFA 1LCCA 1LQCA 4X4CA 2BNOA 1NW3A 3LISA 4JQDA 1PRAA 1RPEL 4PU8A 2PUAA 2PXKA 5K98B 2JVLA 1XWRA 1IC8A 3QYXA 2CROA 2O38A 3DM5A 2LYLA 2KEJA 1LLIA 1SQ8A 3U3WA 3QWGA 3CECA 4YG1A 3OQOA 3NZLA 2XCJA 1CQTA 2YBDA 2IVGA 2LYPA 1DW9A 1PNRA 1WIZA 2HSGA 2XSDC 3S8QA 1O4XA 3GN5A 3O9XA 4Z59A 1JWLA 3BD1A 2AXUA 2FFHA 2LNMA 3RZZA
chains in the Genus database with same CATH topology
2PXLA 2XXAA 2PXKA 5GAHi 2PXVA 3KL4A 2PXTA 2JQEA 2PXBA 2PXEA 2V3CC 3DM5A 3LQXA 2PXUA 2PXPA 1QB2A 1MFQC 2PXQA 2PXFA 1DULA 3NDBB 2FFHA 1HQ1A 2PXDA 5GAGi 1QZXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PXL A;  2XXA A;  2PXK A;  5GAH i;  2PXV A;  3KL4 A;  2PXT A;  2JQE A;  2PXB A;  2PXE A;  2V3C C;  3DM5 A;  3LQX A;  2PXU A;  2PXP A;  1QB2 A;  1MFQ C;  2PXQ A;  2PXF A;  1DUL A;  3NDB B;  2FFH A;  1HQ1 A;  2PXD A;  5GAG i;  1QZX A; 
#chains in the Genus database with same CATH topology
 4X4B A;  1R69 A;  2IU7 A;  2LLW A;  1ZZB A;  1QQB A;  1ADR A;  3D1N I;  2XXP A;  3QOX A;  2AXV A;  4I6U A;  1EFA A;  5A7L A;  1X57 A;  1QQA A;  3DNV B;  5DRT A;  4ER3 A;  2WIU B;  4EZI A;  2AWI A;  4Z5D A;  2A6C A;  3F52 A;  1PRV A;  4X4H A;  2OR1 L;  3JXB C;  2J7U A;  2XXQ A;  2HFZ A;  2EF8 A;  4YAR A;  1ZZ8 A;  1OCT C;  1CJG A;  4F8D A;  3GZD A;  3SCH A;  1S7E A;  2PUC A;  2GRM A;  3OMT A;  3ZKC A;  5DTR A;  3GBF A;  3A9Z A;  2LCV A;  3PE5 A;  3VWS A;  2ICP A;  4J1X A;  5DRY A;  3NDB B;  3UWP A;  5DTQ A;  1RZS A;  3GZD C;  4Z5C A;  1L1M A;  2LYJ A;  4X4G A;  3VK0 A;  2O49 A;  2PXL A;  4IVZ A;  4ER5 A;  1RZR D;  2R63 A;  3GUU A;  1ZUG A;  5DSX A;  2JCG A;  3F51 A;  3NXH A;  2PXB A;  1R63 A;  2PXP A;  2LYS A;  5JUW A;  2KEI A;  4FN3 A;  2HCN A;  1ZZ7 A;  4X4E A;  1X2L A;  2XXA A;  1ZZ6 A;  4O8B A;  4Z5H A;  2PPX A;  3QOW A;  3BDN A;  3QF3 A;  1QPZ A;  2EBY A;  2XIU A;  4Q2J A;  3PXP A;  2HIN A;  2VEO A;  2IV1 A;  2IUO A;  2KZ8 A;  1DUL A;  1ZZC A;  3QQ6 A;  3JXC L;  2AW6 A;  4YG7 B;  3LFP A;  2ODR D;  4X4D A;  1UXC A;  3SCG A;  1RZR A;  2FJR A;  3FYA A;  2L8N A;  4X4F A;  1RIO A;  3KL4 A;  3OWQ A;  1UXD A;  2PXU A;  3HZI B;  2M4H A;  2HCS A;  3FYM A;  3KJX A;  3SX0 A;  1VPW A;  4ER0 A;  1JFT A;  2GRL A;  4I6T A;  3TEP A;  2D5V A;  4JCX A;  1PRU A;  2GZU A;  3GZC A;  3MLF A;  2PXT A;  2PUD A;  3R09 A;  3OQM A;  3TRB A;  2BNM A;  1WET A;  2H8R A;  1OSL A;  2LLV A;  4EQZ A;  1UTX A;  4X4I A;  2PXD A;  3ZPX A;  2IVB A;  2L49 A;  3G5G A;  5GAG i;  4FBI A;  3BS3 A;  4GHJ A;  3A9X A;  4MCX A;  1Y9Q A;  4NDW A;  4GQM A;  5DTM A;  2EWT A;  3FMY A;  3G7D A;  4ER7 A;  4YG4 A;  3OP9 A;  1E3O C;  2LYK A;  4Y42 A;  2V3C C;  3LQX A;  1BDH A;  4PU4 C;  2XI8 A;  4HRA A;  1NER A;  3M9L A;  2AXZ A;  1JFS A;  1HF0 A;  3UFD A;  3KXA A;  3SCF A;  4OBM A;  2R1J L;  1WH6 A;  2CSF A;  3NRO A;  5GAH i;  3B7H A;  3JXD L;  5DT2 A;  2PXE A;  2MQK A;  4ER6 A;  1QP4 A;  2KEK A;  4WVL A;  4IA8 A;  4MCT A;  3TEL A;  3QFI A;  1AU7 A;  2L1P A;  2B5A A;  4DE9 A;  4EKI A;  4PU7 A;  3MEJ A;  1JH9 A;  1ZVV A;  3IVP A;  2PIJ A;  2PUG A;  1PER L;  3TFL A;  3ZHI A;  1LMB 3;  2KPJ A;  3SR4 A;  2LYQ A;  3F6W A;  3GN5 B;  2JQE A;  1BDI A;  3OQN A;  1QB2 A;  1ZAY A;  3ME5 A;  2ICT A;  2J7W A;  2PUE A;  3ZHM A;  1QP7 A;  1YSE A;  1ZZ9 A;  4J1W A;  2IVQ A;  3L1P A;  4OB4 A;  2O4A A;  2XJ3 A;  2PXV A;  4Z58 A;  3H5T A;  1MFQ C;  2BJC A;  2PXF A;  3R1F A;  1HQ1 A;  1U2Z A;  2WUS R;  1ZPQ A;  4I8T A;  1LCD A;  4EKG A;  1NEQ A;  4YBA A;  2OFY A;  2PUB A;  1Y7Y A;  1POU A;  4EK9 A;  3OKZ A;  2LYR A;  2MEZ A;  1WH8 A;  3CRO L;  2PXQ A;  4JCY A;  2MXD A;  3CLC A;  1B0N A;  3KZ3 A;  1QZX A;  3A9Y A;  2BNN A;  4IWR A;  1DWK A;  3EUS A;  4DE8 A;  4PU3 C;  3G0T A;  1ZS4 A;  2PE5 A;  4I6R A;  1GT0 C;  2AUW A;  1QP0 A;  2PUF A;  1LCC A;  1LQC A;  4X4C A;  2BNO A;  1NW3 A;  3LIS A;  4JQD A;  1PRA A;  1RPE L;  4PU8 A;  2PUA A;  2PXK A;  5K98 B;  2JVL A;  1XWR A;  1IC8 A;  3QYX A;  2CRO A;  2O38 A;  3DM5 A;  2LYL A;  2KEJ A;  1LLI A;  1SQ8 A;  3U3W A;  3QWG A;  3CEC A;  4YG1 A;  3OQO A;  3NZL A;  2XCJ A;  1CQT A;  2YBD A;  2IVG A;  2LYP A;  1DW9 A;  1PNR A;  1WIZ A;  2HSG A;  2XSD C;  3S8Q A;  1O4X A;  3GN5 A;  3O9X A;  4Z59 A;  1JWL A;  3BD1 A;  2AXU A;  2FFH A;  2LNM A;  3RZZ A; 
#chains in the Genus database with same CATH homology
 2PXL A;  2XXA A;  2PXK A;  5GAH i;  2PXV A;  3KL4 A;  2PXT A;  2JQE A;  2PXB A;  2PXE A;  2V3C C;  3DM5 A;  3LQX A;  2PXU A;  2PXP A;  1QB2 A;  1MFQ C;  2PXQ A;  2PXF A;  1DUL A;  3NDB B;  2FFH A;  1HQ1 A;  2PXD A;  5GAG i;  1QZX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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