1MFQC

Crystal structure analysis of a ternary s-domain complex of human signal recognition particle
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
116
structure length
108
Chain Sequence
KHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein/rna
molecule keywords 7S RNA of human SRP
publication title Induced structural changes of 7SL RNA during the assembly of human signal recognition particle
pubmed doi rcsb
source organism Homo sapiens
total genus 32
structure length 108
sequence length 116
ec nomenclature
pdb deposition date 2002-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02978 SRP_SPB Signal peptide binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 1mfqC00
3NDBB 3DM5A 1QB2A 3LQXA 2PXDA 2XXAA 2PXBA 2PXFA 2PXPA 2V3CC 3KL4A 2PXEA 1HQ1A 2PXQA 1DULA 1MFQC 2PXUA 1QZXA 2JQEA 2FFHA 2PXTA 2PXVA 5GAHi 2PXLA 2PXKA 5GAGi
chains in the Genus database with same CATH superfamily
2KEIA 3A9YA 2OR1L 1Y9QA 3MEJA 3LFPA 3F52A 1ZVVA 1R69A 4I6RA 5DTRA 5JUWA 2CSFA 4Y42A 1GT0C 2LYPA 2R1JL 1S7EA 1PNRA 5GAGi 2AW6A 4DE9A 2JVLA 3DNVB 2L49A 1QB2A 2O4AA 2KEKA 2AUWA 1O4XA 3QOXA 2VEOA 3ME5A 1ZUGA 4X4FA 3NXHA 2PUGA 1CJGA 1BDHA 3NZLA 2HCSA 3CECA 5DTQA 3B7HA 2MXDA 2LLWA 3JXBC 3L1PA 2PXTA 3M9LA 1PRVA 2JCGA 1EFAA 1QP7A 2PUAA 4IVZA 4ER6A 4YG4A 1E3OC 4NDWA 3SCFA 1NW3A 2XI8A 3ZHIA 3G5GA 1JFSA 2XXAA 4JQDA 2L8NA 2EWTA 1ZZ7A 4O8BA 1RZSA 2ICTA 1BDIA 3PXPA 4Z58A 1LLIA 3UFDA 1ZZ8A 3TELA 4EK9A 3G7DA 3OMTA 2JQEA 3HZIB 1QQAA 3F51A 1WH8A 3BS3A 3VK0A 5DRYA 1LMB3 2BNMA 3FYMA 1OCTC 3QWGA 1JH9A 4PU8A 1HQ1A 3FMYA 4X4CA 1WH6A 4GQMA 3F6WA 3NROA 4I6UA 2BNOA 3SCHA 4J1XA 5GAHi 2BJCA 4Z5CA 1X57A 1ZAYA 2OFYA 2CROA 3UWPA 4IWRA 2LYKA 2GZUA 4MCTA 2FJRA 2LLVA 1WIZA 3GZDC 1RIOA 1ZZBA 2J7UA 2LYLA 1ZZ9A 1DW9A 2PUDA 4EQZA 2HINA 3LQXA 2PXBA 1SQ8A 2IVGA 2LNMA 3CLCA 2IV1A 1VPWA 2ICPA 1RPEL 4OB4A 5A7LA 2HFZA 2A6CA 3VWSA 4YARA 2IVQA 1Y7YA 1XWRA 2R63A 2PXPA 3TFLA 4IA8A 1AU7A 1IC8A 2WUSR 1DULA 1MFQC 2MQKA 1QQBA 2XXPA 3R1FA 4I6TA 5DT2A 4EZIA 1PERL 1PRAA 1UTXA 3D1NI 2EBYA 2EF8A 4F8DA 2HSGA 3A9ZA 3GN5A 3KZ3A 3KXAA 4X4DA 2PXEA 2J7WA 1QP0A 2YBDA 3BDNA 1QP4A 2PXLA 1RZRA 1LQCA 2KEJA 4J1WA 4ER7A 4I8TA 2PPXA 1UXCA 2IUOA 1DWKA 2B5AA 2PXUA 2LCVA 4YG7B 1L1MA 4X4IA 2PXKA 3A9XA 3NDBB 3QYXA 1B0NA 2O38A 5DTMA 4YBAA 4X4HA 1POUA 4Q2JA 2AXVA 4EKIA 2MEZA 3OWQA 3QQ6A 3R09A 2LYRA 1RZRD 4Z59A 4PU3C 5DSXA 4JCXA 1X2LA 3RZZA 4YG1A 1JWLA 1UXDA 3GZDA 3G0TA 4WVLA 2PIJA 2LYSA 4HRAA 3OQMA 2GRLA 2AXUA 2HCNA 1ZS4A 2PUBA 2XCJA 4OBMA 1CQTA 2H8RA 3QOWA 2IVBA 2FFHA 4Z5DA 4GHJA 4PU7A 3SCGA 2L1PA 2LYJA 3SR4A 1HF0A 2PXDA 3O9XA 3GUUA 2XXQA 1ZZCA 3KL4A 1ZPQA 3FYAA 2PXQA 2AWIA 1JFTA 4X4BA 3QF3A 4PU4C 2PE5A 1NEQA 2O49A 1PRUA 4MCXA 1QPZA 3TRBA 3KJXA 4ER3A 3TEPA 1U2ZA 2LYQA 3BD1A 3GBFA 4DE8A 3SX0A 2XJ3A 3QFIA 1NERA 2M4HA 4JCYA 1ADRA 3OP9A 2XSDC 2D5VA 3OKZA 4FN3A 1LCCA 3JXCL 3LISA 2PUFA 2IU7A 3IVPA 4EKGA 1R63A 2KZ8A 3PE5A 2PUCA 3S8QA 2AXZA 1LCDA 2BNNA 2GRMA 2PUEA 1QZXA 2WIUB 4ER5A 2KPJA 3H5TA 5DRTA 2PXVA 4FBIA 3MLFA 4Z5HA 3ZHMA 2ODRD 3EUSA 3DM5A 3GZCA 3ZKCA 4ER0A 1ZZ6A 2PXFA 3OQOA 2V3CC 3JXDL 3U3WA 3GN5B 1WETA 3CROL 5K98B 2XIUA 1YSEA 3ZPXA 3OQNA 4X4GA 1OSLA 4X4EA
chains in the Genus database with same CATH topology
3NDBB 3DM5A 1QB2A 3LQXA 2PXDA 2XXAA 2PXBA 2PXFA 2PXPA 2V3CC 3KL4A 2PXEA 1HQ1A 2PXQA 1DULA 1MFQC 2PXUA 1QZXA 2JQEA 2FFHA 2PXTA 2PXVA 5GAHi 2PXLA 2PXKA 5GAGi
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NDB B;  3DM5 A;  1QB2 A;  3LQX A;  2PXD A;  2XXA A;  2PXB A;  2PXF A;  2PXP A;  2V3C C;  3KL4 A;  2PXE A;  1HQ1 A;  2PXQ A;  1DUL A;  1MFQ C;  2PXU A;  1QZX A;  2JQE A;  2FFH A;  2PXT A;  2PXV A;  5GAH i;  2PXL A;  2PXK A;  5GAG i; 
#chains in the Genus database with same CATH topology
 2KEI A;  3A9Y A;  2OR1 L;  1Y9Q A;  3MEJ A;  3LFP A;  3F52 A;  1ZVV A;  1R69 A;  4I6R A;  5DTR A;  5JUW A;  2CSF A;  4Y42 A;  1GT0 C;  2LYP A;  2R1J L;  1S7E A;  1PNR A;  5GAG i;  2AW6 A;  4DE9 A;  2JVL A;  3DNV B;  2L49 A;  1QB2 A;  2O4A A;  2KEK A;  2AUW A;  1O4X A;  3QOX A;  2VEO A;  3ME5 A;  1ZUG A;  4X4F A;  3NXH A;  2PUG A;  1CJG A;  1BDH A;  3NZL A;  2HCS A;  3CEC A;  5DTQ A;  3B7H A;  2MXD A;  2LLW A;  3JXB C;  3L1P A;  2PXT A;  3M9L A;  1PRV A;  2JCG A;  1EFA A;  1QP7 A;  2PUA A;  4IVZ A;  4ER6 A;  4YG4 A;  1E3O C;  4NDW A;  3SCF A;  1NW3 A;  2XI8 A;  3ZHI A;  3G5G A;  1JFS A;  2XXA A;  4JQD A;  2L8N A;  2EWT A;  1ZZ7 A;  4O8B A;  1RZS A;  2ICT A;  1BDI A;  3PXP A;  4Z58 A;  1LLI A;  3UFD A;  1ZZ8 A;  3TEL A;  4EK9 A;  3G7D A;  3OMT A;  2JQE A;  3HZI B;  1QQA A;  3F51 A;  1WH8 A;  3BS3 A;  3VK0 A;  5DRY A;  1LMB 3;  2BNM A;  3FYM A;  1OCT C;  3QWG A;  1JH9 A;  4PU8 A;  1HQ1 A;  3FMY A;  4X4C A;  1WH6 A;  4GQM A;  3F6W A;  3NRO A;  4I6U A;  2BNO A;  3SCH A;  4J1X A;  5GAH i;  2BJC A;  4Z5C A;  1X57 A;  1ZAY A;  2OFY A;  2CRO A;  3UWP A;  4IWR A;  2LYK A;  2GZU A;  4MCT A;  2FJR A;  2LLV A;  1WIZ A;  3GZD C;  1RIO A;  1ZZB A;  2J7U A;  2LYL A;  1ZZ9 A;  1DW9 A;  2PUD A;  4EQZ A;  2HIN A;  3LQX A;  2PXB A;  1SQ8 A;  2IVG A;  2LNM A;  3CLC A;  2IV1 A;  1VPW A;  2ICP A;  1RPE L;  4OB4 A;  5A7L A;  2HFZ A;  2A6C A;  3VWS A;  4YAR A;  2IVQ A;  1Y7Y A;  1XWR A;  2R63 A;  2PXP A;  3TFL A;  4IA8 A;  1AU7 A;  1IC8 A;  2WUS R;  1DUL A;  1MFQ C;  2MQK A;  1QQB A;  2XXP A;  3R1F A;  4I6T A;  5DT2 A;  4EZI A;  1PER L;  1PRA A;  1UTX A;  3D1N I;  2EBY A;  2EF8 A;  4F8D A;  2HSG A;  3A9Z A;  3GN5 A;  3KZ3 A;  3KXA A;  4X4D A;  2PXE A;  2J7W A;  1QP0 A;  2YBD A;  3BDN A;  1QP4 A;  2PXL A;  1RZR A;  1LQC A;  2KEJ A;  4J1W A;  4ER7 A;  4I8T A;  2PPX A;  1UXC A;  2IUO A;  1DWK A;  2B5A A;  2PXU A;  2LCV A;  4YG7 B;  1L1M A;  4X4I A;  2PXK A;  3A9X A;  3NDB B;  3QYX A;  1B0N A;  2O38 A;  5DTM A;  4YBA A;  4X4H A;  1POU A;  4Q2J A;  2AXV A;  4EKI A;  2MEZ A;  3OWQ A;  3QQ6 A;  3R09 A;  2LYR A;  1RZR D;  4Z59 A;  4PU3 C;  5DSX A;  4JCX A;  1X2L A;  3RZZ A;  4YG1 A;  1JWL A;  1UXD A;  3GZD A;  3G0T A;  4WVL A;  2PIJ A;  2LYS A;  4HRA A;  3OQM A;  2GRL A;  2AXU A;  2HCN A;  1ZS4 A;  2PUB A;  2XCJ A;  4OBM A;  1CQT A;  2H8R A;  3QOW A;  2IVB A;  2FFH A;  4Z5D A;  4GHJ A;  4PU7 A;  3SCG A;  2L1P A;  2LYJ A;  3SR4 A;  1HF0 A;  2PXD A;  3O9X A;  3GUU A;  2XXQ A;  1ZZC A;  3KL4 A;  1ZPQ A;  3FYA A;  2PXQ A;  2AWI A;  1JFT A;  4X4B A;  3QF3 A;  4PU4 C;  2PE5 A;  1NEQ A;  2O49 A;  1PRU A;  4MCX A;  1QPZ A;  3TRB A;  3KJX A;  4ER3 A;  3TEP A;  1U2Z A;  2LYQ A;  3BD1 A;  3GBF A;  4DE8 A;  3SX0 A;  2XJ3 A;  3QFI A;  1NER A;  2M4H A;  4JCY A;  1ADR A;  3OP9 A;  2XSD C;  2D5V A;  3OKZ A;  4FN3 A;  1LCC A;  3JXC L;  3LIS A;  2PUF A;  2IU7 A;  3IVP A;  4EKG A;  1R63 A;  2KZ8 A;  3PE5 A;  2PUC A;  3S8Q A;  2AXZ A;  1LCD A;  2BNN A;  2GRM A;  2PUE A;  1QZX A;  2WIU B;  4ER5 A;  2KPJ A;  3H5T A;  5DRT A;  2PXV A;  4FBI A;  3MLF A;  4Z5H A;  3ZHM A;  2ODR D;  3EUS A;  3DM5 A;  3GZC A;  3ZKC A;  4ER0 A;  1ZZ6 A;  2PXF A;  3OQO A;  2V3C C;  3JXD L;  3U3W A;  3GN5 B;  1WET A;  3CRO L;  5K98 B;  2XIU A;  1YSE A;  3ZPX A;  3OQN A;  4X4G A;  1OSL A;  4X4E A; 
#chains in the Genus database with same CATH homology
 3NDB B;  3DM5 A;  1QB2 A;  3LQX A;  2PXD A;  2XXA A;  2PXB A;  2PXF A;  2PXP A;  2V3C C;  3KL4 A;  2PXE A;  1HQ1 A;  2PXQ A;  1DUL A;  1MFQ C;  2PXU A;  1QZX A;  2JQE A;  2FFH A;  2PXT A;  2PXV A;  5GAH i;  2PXL A;  2PXK A;  5GAG i; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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