1MHMB

Crystal structure of s-adenosylmethionine decarboxylase from potato
Total Genus 7
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
58
structure length
54
Chain Sequence
FEKRLEISFVEPGLFGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
molecule keywords S-adenosylmethionine decarboxylase
publication title Monomeric S-Adenosylmethionine Decarboxylase from Plants Provides an Alternative to Putrescine Stimulation
pubmed doi rcsb
source organism Solanum tuberosum
total genus 7
structure length 54
sequence length 58
ec nomenclature ec 4.1.1.50: Adenosylmethionine decarboxylase.
pdb deposition date 2002-08-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.360.50 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase; domain 2 S-adenosylmethionine decarboxylase 1mhmB00
3DZ2B 1I72B 1I7CB 1I79B 3EP4B 3DZ3B 3DZ4B 3EP8B 3EPAB 3EPBB 3EP6B 3DZ7B 3DZ6B 3DZ5B 3EP7B 3H0VB 1JENB 1I7BB 5TVOB 3H0WB 3EP3B 1I7MB 1MHMB 3EP5B 3EP9B
chains in the Genus database with same CATH superfamily
3GFGA 1H6DA 1I72B 3E18A 1HDGO 4XQEA 1XYGA 3DO5A 5AVOA 1NQAO 3QV1A 3DB2A 2I3GA 1TLTA 4AK1A 1EVJA 3PFWO 1LA2A 1J5PA 1B7GO 1DBVO 1GYQA 3BTUA 4WNCA 5AQ1A 4MVJI 4MVJD 4XQCA 4XRGA 5JY6A 1QMIA 4MVJH 2VYVD 3IJPA 4H3VA 4PG7A 1F06A 2B4RO 3HXLA 4R3NA 3DAPA 4GMGA 1IHXA 3HNPA 3EUWA 3U3XA 1YL7A 3BTVA 1NBOA 3ZDFA 1YWGO 1E7YA 3O9ZA 1DSSG 1NWHA 2EP5A 3EP4B 2GLXA 3RBVA 3E6AA 1ML3A 1P1HA 5M6DA 3RC1A 4R41A 4LGVA 3EP7B 4YWJA 3NT4A 3IWBB 2VYNA 3EP5B 2POQX 1H9AA 2QZ9A 5EESA 1T4DA 1DRUA 1JKIA 1VKOA 2CZCA 3PYLA 1PQUA 2GD1O 4MVJM 2PKQP 3V1YA 3E9MA 5EINA 1K3TA 3EPAB 4MJLA 3LC1O 4O59O 4R3WA 1SZJG 3B1JA 2EP7A 4R54A 3RVDA 1PR3A 4L8VA 1H93A 2OZPA 3H0WB 1E77A 1JKFA 1E7MA 5A04A 4R5HA 4MKXA 3WBFA 2FPNA 3C8MA 1H94A 4DBVO 4GQAA 4R51A 1CRWG 2IXAA 3PZBA 3CMCO 4MIEA 3INGA 1MC4A 2NVWA 3RC7A 3WGOA 1ZH8A 3QY9A 2HO5A 1NQOA 1DC4A 3HSKA 1YL5A 3IDSA 4MKZA 5JW6A 4XB2A 1LC3A 1YS4A 4HKTA 1DRWA 4GMFA 4PLPA 3GPDG 3H9EO 2YYYA 3PYMA 3V5NA 3MTJA 5EIOA 4PG6A 1DC6A 3K73O 3Q2IA 3ZCXA 5A02A 3NTOA 3EZYA 1NQ5A 4LRTB 1P9LA 3DMTC 2NQTA 5KVQA 3LC7O 3CEAA 1DPGA 4XQ9A 3KUXA 2VYVA 1PU2A 3EP8B 3RC9A 2DPGA 1FF9A 3KSZO 3DZ6B 5A06A 4LSMA 1H6AA 3LVFO 5JYFA 4II7A 1H2HA 3QVWA 3NT2A 5C7OO 3NT5A 1YDWA 3E1KA 5GZ6A 3TW3A 1GCUA 2PKRA 3Q1LA 4PG8A 1H6CA 3TUTA 4PG5A 3L6OO 5GZ3A 4R4JA 4YDRA 3OA0A 1S7CA 4MIOA 1NWCA 1P1JA 1YL6A 4RL6A 3E82A 5C7IO 1A7KA 1VSVA 2B4TO 4N54A 3EPBB 3DZ7B 3VOSA 1ZNQO 3GDOA 4MVJP 5A03A 4L9RA 3NTQA 4FB5A 1P1KA 3TV1A 4WNIA 5TVOB 1H9BA 2BHLA 2GZ3A 3OQBA 3HJAA 4JN6B 2I3AA 5T73A 3QVSA 3WBBA 3UUWA 2G17A 4IQ0A 1TVEA 1C3VA 4QX6A 4MINA 1GAEO 3TZ6A 3K2BA 2VYND 3BTSA 3DMTA 3OA2A 3WYBA 3OHSX 1JENB 1GD1O 1I7MB 2DAPA 4CLQA 3FD8A 1TB4A 1NX6A 3EP9B 2R00C 4ZHSA 4O63O 3NTRA 3MZ0A 5C7LO 3KSDO 3K9QO 1PQPA 1RYDA 1EBFA 5CEFA 4O89A 2P2SA 2I5PO 1Q7GA 4DPLA 1OZAA 2CVOA 4GPD1 3CINA 4DPKA 2GZ2A 4Z0HO 1OFGA 4DPMA 3STHA 2XF8A 3PYXA 1BRMA 1QXSA 3CPSA 3KGDA 3QVTA 3L0DA 4WOJA 4LRSB 3UW3A 4IQ8A 3H0VB 2O48X 3GNQA 1RM0A 2DBVO 3EP3B 2EJWA 3B1KA 3RC2A 4MVJA 4O8JA 3LC2O 1CERA 3HQ4O 1EBUA 1DIHA 1Q2XA 1U8FO 5JYEA 1VC2A 3KV3O 5KVSA 1CF2O 1GR0A 4PG4A 5A05A 3DR3A 1UYJA 3PZRA 2Q22A 1ARZA 2R00A 2Q49A 2HKIA 2Q4EA 3VAZA 3ZJXA 1P1IA 4MVJF 4XQGA 3WGQA 4F3YA 4K9DA 3QVXA 4R5MA 2X0NA 1NPTO 4EW6A 1DC3A 4XR4A 4MVJE 3DZ4B 3JSAA 5JYAA 3EC7A 1DAPA 1RM3A 4MIYA 2BH9A 2O4UX 1IHYA 2IXBA 3QW2A 3DZ5B 1J0XO 1RM4A 1MB4A 3TUXA 1I7BB 1VKNA 3RCBA 3Q11A 1P1FA 2GYYA 5BNTA 3EVNA 5J9GA 1NVMB 5EERA 3F4LA 1XEAA 3WGYA 2YV3A 3E5RA 3ABIA 1PS8A 3WGZA 1VSUA 5DDIP 2DUUA 3M2TA 3EP6B 3DBVO 3WB9A 1I33A 1DC5A 1E5LA 1QMHA 4KOAA 2PH5A 1MHMB 2X5KO 1VM6A 2HJSA 3PWSA 4NHEA 4XB1A 3DZ2B 1I7CB 3DTYA 4BOYA 1LC0A 3FHLA 3DZ3B 3I23A 3PQVA 1U1IA 4DIBA 3DOCA 4P8RA 2H63A 3IWDB 4INAA 1OBFO 3BIOA 3B20A 2AXQA 3IWCB 2DC1A 2G82A 2PKQO 4HADA 3V2UA 3MOIA 3IP3A 3Q0EA 1E5QA 1T4BA 1GYPA 5GZ1A 1TA4A 1H6BA 1GADO 1I79B 1RYEA 3PWKA 2GZ1A 2X5JO 1RM5A 3L4SO 1JN0A 1GPDG 2D2IA 3CIFA 1I32A 3Q2KA 1DRVA 1QKIA 4MVJG 1GL3A 4TVBA 3C1AA 4ZICA 3WYCA
chains in the Genus database with same CATH topology
3EP7A 1JENA 1I7BA 3DZ2B 5TVOA 3H0WA 3EP3A 1I72B 1I7MA 1I7CB 3EP5A 1I79B 1MHMA 1VR7A 3EP4B 3EP9A 1MSVA 3DZ3B 3DZ4B 3EP8B 2IIIA 3DZ2A 3EPAB 1I72A 1I7CA 3EPBB 3EP6B 1I79A 3DZ7B 3DZ6B 3EP4A 3DZ5B 3DZ3A 3DZ4A 3EP8A 3EP7B 3H0VB 1TMIA 3EPAA 1JENB 1I7BB 5TVOB 3EPBA 3EP3B 1JL0A 1I7MB 3DZ7A 3EP6A 3DZ6A 1TLUA 3H0WB 1MHMB 3EP5B 3DZ5A 3EP9B 3H0VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DZ2 B;  1I72 B;  1I7C B;  1I79 B;  3EP4 B;  3DZ3 B;  3DZ4 B;  3EP8 B;  3EPA B;  3EPB B;  3EP6 B;  3DZ7 B;  3DZ6 B;  3DZ5 B;  3EP7 B;  3H0V B;  1JEN B;  1I7B B;  5TVO B;  3H0W B;  3EP3 B;  1I7M B;  1MHM B;  3EP5 B;  3EP9 B; 
#chains in the Genus database with same CATH topology
 3GFG A;  1H6D A;  1I72 B;  3E18 A;  1HDG O;  4XQE A;  1XYG A;  3DO5 A;  5AVO A;  1NQA O;  3QV1 A;  3DB2 A;  2I3G A;  1TLT A;  4AK1 A;  1EVJ A;  3PFW O;  1LA2 A;  1J5P A;  1B7G O;  1DBV O;  1GYQ A;  3BTU A;  4WNC A;  5AQ1 A;  4MVJ I;  4MVJ D;  4XQC A;  4XRG A;  5JY6 A;  1QMI A;  4MVJ H;  2VYV D;  3IJP A;  4H3V A;  4PG7 A;  1F06 A;  2B4R O;  3HXL A;  4R3N A;  3DAP A;  4GMG A;  1IHX A;  3HNP A;  3EUW A;  3U3X A;  1YL7 A;  3BTV A;  1NBO A;  3ZDF A;  1YWG O;  1E7Y A;  3O9Z A;  1DSS G;  1NWH A;  2EP5 A;  3EP4 B;  2GLX A;  3RBV A;  3E6A A;  1ML3 A;  1P1H A;  5M6D A;  3RC1 A;  4R41 A;  4LGV A;  3EP7 B;  4YWJ A;  3NT4 A;  3IWB B;  2VYN A;  3EP5 B;  2POQ X;  1H9A A;  2QZ9 A;  5EES A;  1T4D A;  1DRU A;  1JKI A;  1VKO A;  2CZC A;  3PYL A;  1PQU A;  2GD1 O;  4MVJ M;  2PKQ P;  3V1Y A;  3E9M A;  5EIN A;  1K3T A;  3EPA B;  4MJL A;  3LC1 O;  4O59 O;  4R3W A;  1SZJ G;  3B1J A;  2EP7 A;  4R54 A;  3RVD A;  1PR3 A;  4L8V A;  1H93 A;  2OZP A;  3H0W B;  1E77 A;  1JKF A;  1E7M A;  5A04 A;  4R5H A;  4MKX A;  3WBF A;  2FPN A;  3C8M A;  1H94 A;  4DBV O;  4GQA A;  4R51 A;  1CRW G;  2IXA A;  3PZB A;  3CMC O;  4MIE A;  3ING A;  1MC4 A;  2NVW A;  3RC7 A;  3WGO A;  1ZH8 A;  3QY9 A;  2HO5 A;  1NQO A;  1DC4 A;  3HSK A;  1YL5 A;  3IDS A;  4MKZ A;  5JW6 A;  4XB2 A;  1LC3 A;  1YS4 A;  4HKT A;  1DRW A;  4GMF A;  4PLP A;  3GPD G;  3H9E O;  2YYY A;  3PYM A;  3V5N A;  3MTJ A;  5EIO A;  4PG6 A;  1DC6 A;  3K73 O;  3Q2I A;  3ZCX A;  5A02 A;  3NTO A;  3EZY A;  1NQ5 A;  4LRT B;  1P9L A;  3DMT C;  2NQT A;  5KVQ A;  3LC7 O;  3CEA A;  1DPG A;  4XQ9 A;  3KUX A;  2VYV A;  1PU2 A;  3EP8 B;  3RC9 A;  2DPG A;  1FF9 A;  3KSZ O;  3DZ6 B;  5A06 A;  4LSM A;  1H6A A;  3LVF O;  5JYF A;  4II7 A;  1H2H A;  3QVW A;  3NT2 A;  5C7O O;  3NT5 A;  1YDW A;  3E1K A;  5GZ6 A;  3TW3 A;  1GCU A;  2PKR A;  3Q1L A;  4PG8 A;  1H6C A;  3TUT A;  4PG5 A;  3L6O O;  5GZ3 A;  4R4J A;  4YDR A;  3OA0 A;  1S7C A;  4MIO A;  1NWC A;  1P1J A;  1YL6 A;  4RL6 A;  3E82 A;  5C7I O;  1A7K A;  1VSV A;  2B4T O;  4N54 A;  3EPB B;  3DZ7 B;  3VOS A;  1ZNQ O;  3GDO A;  4MVJ P;  5A03 A;  4L9R A;  3NTQ A;  4FB5 A;  1P1K A;  3TV1 A;  4WNI A;  5TVO B;  1H9B A;  2BHL A;  2GZ3 A;  3OQB A;  3HJA A;  4JN6 B;  2I3A A;  5T73 A;  3QVS A;  3WBB A;  3UUW A;  2G17 A;  4IQ0 A;  1TVE A;  1C3V A;  4QX6 A;  4MIN A;  1GAE O;  3TZ6 A;  3K2B A;  2VYN D;  3BTS A;  3DMT A;  3OA2 A;  3WYB A;  3OHS X;  1JEN B;  1GD1 O;  1I7M B;  2DAP A;  4CLQ A;  3FD8 A;  1TB4 A;  1NX6 A;  3EP9 B;  2R00 C;  4ZHS A;  4O63 O;  3NTR A;  3MZ0 A;  5C7L O;  3KSD O;  3K9Q O;  1PQP A;  1RYD A;  1EBF A;  5CEF A;  4O89 A;  2P2S A;  2I5P O;  1Q7G A;  4DPL A;  1OZA A;  2CVO A;  4GPD 1;  3CIN A;  4DPK A;  2GZ2 A;  4Z0H O;  1OFG A;  4DPM A;  3STH A;  2XF8 A;  3PYX A;  1BRM A;  1QXS A;  3CPS A;  3KGD A;  3QVT A;  3L0D A;  4WOJ A;  4LRS B;  3UW3 A;  4IQ8 A;  3H0V B;  2O48 X;  3GNQ A;  1RM0 A;  2DBV O;  3EP3 B;  2EJW A;  3B1K A;  3RC2 A;  4MVJ A;  4O8J A;  3LC2 O;  1CER A;  3HQ4 O;  1EBU A;  1DIH A;  1Q2X A;  1U8F O;  5JYE A;  1VC2 A;  3KV3 O;  5KVS A;  1CF2 O;  1GR0 A;  4PG4 A;  5A05 A;  3DR3 A;  1UYJ A;  3PZR A;  2Q22 A;  1ARZ A;  2R00 A;  2Q49 A;  2HKI A;  2Q4E A;  3VAZ A;  3ZJX A;  1P1I A;  4MVJ F;  4XQG A;  3WGQ A;  4F3Y A;  4K9D A;  3QVX A;  4R5M A;  2X0N A;  1NPT O;  4EW6 A;  1DC3 A;  4XR4 A;  4MVJ E;  3DZ4 B;  3JSA A;  5JYA A;  3EC7 A;  1DAP A;  1RM3 A;  4MIY A;  2BH9 A;  2O4U X;  1IHY A;  2IXB A;  3QW2 A;  3DZ5 B;  1J0X O;  1RM4 A;  1MB4 A;  3TUX A;  1I7B B;  1VKN A;  3RCB A;  3Q11 A;  1P1F A;  2GYY A;  5BNT A;  3EVN A;  5J9G A;  1NVM B;  5EER A;  3F4L A;  1XEA A;  3WGY A;  2YV3 A;  3E5R A;  3ABI A;  1PS8 A;  3WGZ A;  1VSU A;  5DDI P;  2DUU A;  3M2T A;  3EP6 B;  3DBV O;  3WB9 A;  1I33 A;  1DC5 A;  1E5L A;  1QMH A;  4KOA A;  2PH5 A;  1MHM B;  2X5K O;  1VM6 A;  2HJS A;  3PWS A;  4NHE A;  4XB1 A;  3DZ2 B;  1I7C B;  3DTY A;  4BOY A;  1LC0 A;  3FHL A;  3DZ3 B;  3I23 A;  3PQV A;  1U1I A;  4DIB A;  3DOC A;  4P8R A;  2H63 A;  3IWD B;  4INA A;  1OBF O;  3BIO A;  3B20 A;  2AXQ A;  3IWC B;  2DC1 A;  2G82 A;  2PKQ O;  4HAD A;  3V2U A;  3MOI A;  3IP3 A;  3Q0E A;  1E5Q A;  1T4B A;  1GYP A;  5GZ1 A;  1TA4 A;  1H6B A;  1GAD O;  1I79 B;  1RYE A;  3PWK A;  2GZ1 A;  2X5J O;  1RM5 A;  3L4S O;  1JN0 A;  1GPD G;  2D2I A;  3CIF A;  1I32 A;  3Q2K A;  1DRV A;  1QKI A;  4MVJ G;  1GL3 A;  4TVB A;  3C1A A;  4ZIC A;  3WYC A; 
#chains in the Genus database with same CATH homology
 3EP7 A;  1JEN A;  1I7B A;  3DZ2 B;  5TVO A;  3H0W A;  3EP3 A;  1I72 B;  1I7M A;  1I7C B;  3EP5 A;  1I79 B;  1MHM A;  1VR7 A;  3EP4 B;  3EP9 A;  1MSV A;  3DZ3 B;  3DZ4 B;  3EP8 B;  2III A;  3DZ2 A;  3EPA B;  1I72 A;  1I7C A;  3EPB B;  3EP6 B;  1I79 A;  3DZ7 B;  3DZ6 B;  3EP4 A;  3DZ5 B;  3DZ3 A;  3DZ4 A;  3EP8 A;  3EP7 B;  3H0V B;  1TMI A;  3EPA A;  1JEN B;  1I7B B;  5TVO B;  3EPB A;  3EP3 B;  1JL0 A;  1I7M B;  3DZ7 A;  3EP6 A;  3DZ6 A;  1TLU A;  3H0W B;  1MHM B;  3EP5 B;  3DZ5 A;  3EP9 B;  3H0V A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...