1MI1A

Crystal structure of the ph-beach domain of human neurobeachin
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
414
structure length
414
Chain Sequence
GPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKIDTKVLAYTEGLHGKWMFSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYSLPRVGVGTSYGLPQARRISLATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords Neurobeachin
publication title Crystal structure of the BEACH domain reveals an unusual fold and extensive association with a novel PH domain.
pubmed doi rcsb
source organism Homo sapiens
total genus 111
structure length 414
sequence length 414
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02138 Beach Beige/BEACH domain
A PF14844 PH_BEACH PH domain associated with Beige/BEACH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1540.10 Mainly Alpha Orthogonal Bundle Neurobeachin; Chain: A, domain 1 BEACH domain 1mi1A02
2.30.29.40 Mainly Beta Roll PH-domain like PH domain-like; domain 1 1mi1A01
1T77A 1MI1A
chains in the Genus database with same CATH superfamily
2ROZB 3PG7A 2J0JA 5IRSA 1WGQA 4K17A 4KHBA 3TFMA 4K2PA 1H10A 5D3WA 4HAVB 4EJNA 5JLJB 2ZKMX 4QJ4B 4NSWA 3ZDTA 3UZTA 2DHKA 3NW8A 1XKEA 2GUMA 2AL6A 3U7DA 4IOYX 1XD4A 2UVMA 1WGUA 3ZVRA 1U5FA 1QQGA 4Z2NA 1DROA 2N0YA 2AEHA 4HAWB 4F7GA 2Z0QA 2CY5A 3TO1A 2P0FA 2RSGA 3A8QA 5CLQB 2Z0PA 4HB4B 1FHXA 1V5MA 5D3YA 3AJ4A 1MIZB 1MAIA 1NI2A 3AU4A 4GMXB 5D3XA 1NTVA 2EMTA 4K81A 2K49A 2M14A 4ZRKA 4KHAA 5J3TA 3NSUA 1DBHA 4MT7A 1SHCA 3G9WA 2KR0A 5C79A 1LW3A 2V76A 4GNKB 1RJ2A 2RRFA 4QJ3B 1U27A 1U29A 3KY9A 1B55A 2EMSA 1EGXA 2RLOA 1WJ1A 2XQNM 4L1RA 1T77A 4GN1A 4P7IA 4QXAB 1WJMA 4HB2B 5D3VA 2CY4A 2KIGA 4DBBA 2LKOA 3N7CA 1P5TA 3MPXA 1V5PA 4CYEA 2K00A 1J0WA 4C0AA 2YRYA 4H8SA 2J0MA 3T06A 2LG1A 2YSZA 3NWDA 2Z13A 2DYNA 3O96A 1UNRA 2LYDA 2RVBB 4KAXB 4CSQA 4L6EA 1GC7A 2KIEA 1PMSA 1X05A 2D9XA 2GCLA 4GZUA 3A8PA 5DI9B 1DDWA 3B77A 1UEFA 2GCJA 1ZYIA 2D9ZA 1W1GA 5KCVA 1Z87A 5HE1A 3VIAA 2W2XC 1SGHA 1BAKA 1P3RA 3ML4A 1UPQA 4QJ5B 4KHOA 5J3QA 4A5KA 1AQCA 4DIXA 2I1JA 1Y5OA 1XR0B 1GC6A 2LOZA 1FGZA 4A6FB 2R2YA 1FAOA 1MPHA 2D4QA 2L2IA 3IVFA 2ELAA 1X11A 3PZDA 1P6SA 1V61A 3P7ZA 1X86A 4TYZA 3PVLA 2D10A 3OANA 2CODA 3KRXA 3PP2A 1K5DB 2J0KA 2W2XD 4F7UP 2KUPA 3U8ZA 3HSAA 5LOPB 1EAZA 4HDOA 2DHJA 2DHIA 2DN6A 5C5BB 2D2QA 2ELBA 2H7EA 3GYPA 3V5WA 5DHFB 1DDMA 3BJIA 3TW1A 2CRFA 3PEGA 3ULBA 4GOUA 5HE2A 1MK9B 1PFJA 2DFKA 4MY6A 2K2JA 2UZRA 5GOWB 3RCPA 2VRWB 4ZRIA 3ODXA 4D6WA 2DX1A 4HB3B 4Z2MB 2Z0OA 1ZSQA 2MFQA 1H4RA 4HHVA 2DX5A 3KZ1A 4DXAB 2MKRA 2YS3A 1BTNA 2COAA 2YS5A 1W1HA 3QBVB 2GJYA 2Z4DA 2EJ8A 4MK0A 1MI1A 4WJ7A 4CHMA 3VOQA 5FI1A 1EF1A 3F5RA 4YONA 1BWNA 1V88A 1KZ7A 3M1IB 4TKNA 3HQCA 3CIKA 4PQ0A 3HIEA 4OSNA 1LB1A 4ZRJA 2OTXA 2DYQA 2P0HA 3NWAA 1TJ6A 2QKMA 1IRSA 2D9YA 2I1KA 5KQ4A 2Z59A 4EMOA 1OQNA 1FOEA 4DX90 1FGYA 2OQBA 3AU5A 2D9VA 1ZC3B 4HAUB 3CXBB 3TVVA 1TQZA 2QKLA 2HE7A 1I7AA 5L81A 1M7EA 5JHHA 3SO6A 2YF0A 2IFSA 4KVGB 5DIFB 4PNKA 2I5CA 5DHAB 3PVWA 2N23A 2MDXA 1WI1A 3PVUA 4HAYB 1V5UA 3KSYA 1PLSA 1XCGA 1FB8A 4NY0A 2RNRB 1WVHA 2Y8GA 1V89A 1QC6A 1ZM0A 2D9WA 3DCXA 5HE0A 2YT0A 4KHBB 1MIXA 3HK0A 3LJUX 1NU2A 2D11A 3WYFB 5C16A 1Y19B 1MK7B 1KI1B 2DA0A 5D27A 1RRPB 3SUZA 2KUQA 1W1DA 2ZPYA 1ZVRA 3QWMA 2UZSA 2FJUB 5HE3A 1U5GA 1J19A 4F7HA 5LONB 4EKUA 1ISNA 2G35A 1NTYA 2DTCA 1GG3A 3SV1A 5JP4A 5DH9B 5JHGA 4WVFB 3ODWA 2W2WA 2NMBA 2K8EA 2YVCA 1MKEA 2CAYA 4A6KA 3WA0A 2P8VA 2DLWA 3ODOA 1U5DA 1I2HA 2COCA 1ZC4B 4B6HA 2VKIA 2ROVA 4A6FA 1EVHA 3OHMB 3FEHA 2R0DA 4DX8A 1UNPA 3TCAA 2NBVA 2COFA 4D0NB 4Y94A 2EC1A 5J3YA 1DDVA 4GXBA 4HAZB 2X18A 1WG7A 5I2MA 2VSZA 1XX0A 3QIJA 2FJLA 2P0DA 5M4YB 2RUKB 2Y8FA 2ADZA 2NZ8B 3HW2B 2M38A 1AWEA 5C5BA 3U12A 2DKQA 4HSIA 3P6AA 3D8FA 4IAPA 3SYXA 3DXDA 3GYOA 4HB0B 4WSFA 4GPTB 5CLLB 5KQ1A 1N3HA 2LULA 2K2UA 2J59M 4HDQA 3D8EA 3A58A 4BBKA 1OMWA 1U5EA 2L1CA 2GS0A 1BTKA 1E5WA 2IYBA 3A98B 3KRWA 2PZ1A 2KCJA 3FM8C 2E2XA 3PSCA 3F0WA 1M7RA 1UNQA 2Q13A 2HTHB 2R09A 1KZGA 3DXCA 5C6RA 3NWFA 4K2OA 1DYNA 2DKPA 1OY2A 3ULCA 2MWNB 1FHWA 4HAXB 3BINA 4IFSA 4HATB 5FI0A 1FHOA 3DXEA 2LOXA 2JP2A 1UPRA 3X23A 5LG4B 4XWXA 4A6HA 3D8DA 1K5GB 2I5FA 3FSSA 2BCJA 4YL8A 1Q67A 1TXDA 1X1FA 2H7DA 1X1GA 5I2SA 3FVCA 5EFXA 2Z14A 2YS1A 1U2BA 2Y7BA 2YT2A 3SNHA 1XODA 3MDBC 4GMVA 4OT1A 2KGXB 2YT1A 4CHJA 2RGNB
chains in the Genus database with same CATH topology
1T77A 1MI1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T77 A;  1MI1 A; 
#chains in the Genus database with same CATH topology
 2ROZ B;  3PG7 A;  2J0J A;  5IRS A;  1WGQ A;  4K17 A;  4KHB A;  3TFM A;  4K2P A;  1H10 A;  5D3W A;  4HAV B;  4EJN A;  5JLJ B;  2ZKM X;  4QJ4 B;  4NSW A;  3ZDT A;  3UZT A;  2DHK A;  3NW8 A;  1XKE A;  2GUM A;  2AL6 A;  3U7D A;  4IOY X;  1XD4 A;  2UVM A;  1WGU A;  3ZVR A;  1U5F A;  1QQG A;  4Z2N A;  1DRO A;  2N0Y A;  2AEH A;  4HAW B;  4F7G A;  2Z0Q A;  2CY5 A;  3TO1 A;  2P0F A;  2RSG A;  3A8Q A;  5CLQ B;  2Z0P A;  4HB4 B;  1FHX A;  1V5M A;  5D3Y A;  3AJ4 A;  1MIZ B;  1MAI A;  1NI2 A;  3AU4 A;  4GMX B;  5D3X A;  1NTV A;  2EMT A;  4K81 A;  2K49 A;  2M14 A;  4ZRK A;  4KHA A;  5J3T A;  3NSU A;  1DBH A;  4MT7 A;  1SHC A;  3G9W A;  2KR0 A;  5C79 A;  1LW3 A;  2V76 A;  4GNK B;  1RJ2 A;  2RRF A;  4QJ3 B;  1U27 A;  1U29 A;  3KY9 A;  1B55 A;  2EMS A;  1EGX A;  2RLO A;  1WJ1 A;  2XQN M;  4L1R A;  1T77 A;  4GN1 A;  4P7I A;  4QXA B;  1WJM A;  4HB2 B;  5D3V A;  2CY4 A;  2KIG A;  4DBB A;  2LKO A;  3N7C A;  1P5T A;  3MPX A;  1V5P A;  4CYE A;  2K00 A;  1J0W A;  4C0A A;  2YRY A;  4H8S A;  2J0M A;  3T06 A;  2LG1 A;  2YSZ A;  3NWD A;  2Z13 A;  2DYN A;  3O96 A;  1UNR A;  2LYD A;  2RVB B;  4KAX B;  4CSQ A;  4L6E A;  1GC7 A;  2KIE A;  1PMS A;  1X05 A;  2D9X A;  2GCL A;  4GZU A;  3A8P A;  5DI9 B;  1DDW A;  3B77 A;  1UEF A;  2GCJ A;  1ZYI A;  2D9Z A;  1W1G A;  5KCV A;  1Z87 A;  5HE1 A;  3VIA A;  2W2X C;  1SGH A;  1BAK A;  1P3R A;  3ML4 A;  1UPQ A;  4QJ5 B;  4KHO A;  5J3Q A;  4A5K A;  1AQC A;  4DIX A;  2I1J A;  1Y5O A;  1XR0 B;  1GC6 A;  2LOZ A;  1FGZ A;  4A6F B;  2R2Y A;  1FAO A;  1MPH A;  2D4Q A;  2L2I A;  3IVF A;  2ELA A;  1X11 A;  3PZD A;  1P6S A;  1V61 A;  3P7Z A;  1X86 A;  4TYZ A;  3PVL A;  2D10 A;  3OAN A;  2COD A;  3KRX A;  3PP2 A;  1K5D B;  2J0K A;  2W2X D;  4F7U P;  2KUP A;  3U8Z A;  3HSA A;  5LOP B;  1EAZ A;  4HDO A;  2DHJ A;  2DHI A;  2DN6 A;  5C5B B;  2D2Q A;  2ELB A;  2H7E A;  3GYP A;  3V5W A;  5DHF B;  1DDM A;  3BJI A;  3TW1 A;  2CRF A;  3PEG A;  3ULB A;  4GOU A;  5HE2 A;  1MK9 B;  1PFJ A;  2DFK A;  4MY6 A;  2K2J A;  2UZR A;  5GOW B;  3RCP A;  2VRW B;  4ZRI A;  3ODX A;  4D6W A;  2DX1 A;  4HB3 B;  4Z2M B;  2Z0O A;  1ZSQ A;  2MFQ A;  1H4R A;  4HHV A;  2DX5 A;  3KZ1 A;  4DXA B;  2MKR A;  2YS3 A;  1BTN A;  2COA A;  2YS5 A;  1W1H A;  3QBV B;  2GJY A;  2Z4D A;  2EJ8 A;  4MK0 A;  1MI1 A;  4WJ7 A;  4CHM A;  3VOQ A;  5FI1 A;  1EF1 A;  3F5R A;  4YON A;  1BWN A;  1V88 A;  1KZ7 A;  3M1I B;  4TKN A;  3HQC A;  3CIK A;  4PQ0 A;  3HIE A;  4OSN A;  1LB1 A;  4ZRJ A;  2OTX A;  2DYQ A;  2P0H A;  3NWA A;  1TJ6 A;  2QKM A;  1IRS A;  2D9Y A;  2I1K A;  5KQ4 A;  2Z59 A;  4EMO A;  1OQN A;  1FOE A;  4DX9 0;  1FGY A;  2OQB A;  3AU5 A;  2D9V A;  1ZC3 B;  4HAU B;  3CXB B;  3TVV A;  1TQZ A;  2QKL A;  2HE7 A;  1I7A A;  5L81 A;  1M7E A;  5JHH A;  3SO6 A;  2YF0 A;  2IFS A;  4KVG B;  5DIF B;  4PNK A;  2I5C A;  5DHA B;  3PVW A;  2N23 A;  2MDX A;  1WI1 A;  3PVU A;  4HAY B;  1V5U A;  3KSY A;  1PLS A;  1XCG A;  1FB8 A;  4NY0 A;  2RNR B;  1WVH A;  2Y8G A;  1V89 A;  1QC6 A;  1ZM0 A;  2D9W A;  3DCX A;  5HE0 A;  2YT0 A;  4KHB B;  1MIX A;  3HK0 A;  3LJU X;  1NU2 A;  2D11 A;  3WYF B;  5C16 A;  1Y19 B;  1MK7 B;  1KI1 B;  2DA0 A;  5D27 A;  1RRP B;  3SUZ A;  2KUQ A;  1W1D A;  2ZPY A;  1ZVR A;  3QWM A;  2UZS A;  2FJU B;  5HE3 A;  1U5G A;  1J19 A;  4F7H A;  5LON B;  4EKU A;  1ISN A;  2G35 A;  1NTY A;  2DTC A;  1GG3 A;  3SV1 A;  5JP4 A;  5DH9 B;  5JHG A;  4WVF B;  3ODW A;  2W2W A;  2NMB A;  2K8E A;  2YVC A;  1MKE A;  2CAY A;  4A6K A;  3WA0 A;  2P8V A;  2DLW A;  3ODO A;  1U5D A;  1I2H A;  2COC A;  1ZC4 B;  4B6H A;  2VKI A;  2ROV A;  4A6F A;  1EVH A;  3OHM B;  3FEH A;  2R0D A;  4DX8 A;  1UNP A;  3TCA A;  2NBV A;  2COF A;  4D0N B;  4Y94 A;  2EC1 A;  5J3Y A;  1DDV A;  4GXB A;  4HAZ B;  2X18 A;  1WG7 A;  5I2M A;  2VSZ A;  1XX0 A;  3QIJ A;  2FJL A;  2P0D A;  5M4Y B;  2RUK B;  2Y8F A;  2ADZ A;  2NZ8 B;  3HW2 B;  2M38 A;  1AWE A;  5C5B A;  3U12 A;  2DKQ A;  4HSI A;  3P6A A;  3D8F A;  4IAP A;  3SYX A;  3DXD A;  3GYO A;  4HB0 B;  4WSF A;  4GPT B;  5CLL B;  5KQ1 A;  1N3H A;  2LUL A;  2K2U A;  2J59 M;  4HDQ A;  3D8E A;  3A58 A;  4BBK A;  1OMW A;  1U5E A;  2L1C A;  2GS0 A;  1BTK A;  1E5W A;  2IYB A;  3A98 B;  3KRW A;  2PZ1 A;  2KCJ A;  3FM8 C;  2E2X A;  3PSC A;  3F0W A;  1M7R A;  1UNQ A;  2Q13 A;  2HTH B;  2R09 A;  1KZG A;  3DXC A;  5C6R A;  3NWF A;  4K2O A;  1DYN A;  2DKP A;  1OY2 A;  3ULC A;  2MWN B;  1FHW A;  4HAX B;  3BIN A;  4IFS A;  4HAT B;  5FI0 A;  1FHO A;  3DXE A;  2LOX A;  2JP2 A;  1UPR A;  3X23 A;  5LG4 B;  4XWX A;  4A6H A;  3D8D A;  1K5G B;  2I5F A;  3FSS A;  2BCJ A;  4YL8 A;  1Q67 A;  1TXD A;  1X1F A;  2H7D A;  1X1G A;  5I2S A;  3FVC A;  5EFX A;  2Z14 A;  2YS1 A;  1U2B A;  2Y7B A;  2YT2 A;  3SNH A;  1XOD A;  3MDB C;  4GMV A;  4OT1 A;  2KGX B;  2YT1 A;  4CHJ A;  2RGN B; 
#chains in the Genus database with same CATH homology
 1T77 A;  1MI1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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