1MK3A

Solution structure of human bcl-w protein
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
178
structure length
178
Chain Sequence
ATPASAPDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEVLVGQVQEWMVAYLETRLADWIHSSGGWAEFTALYGDGALEEARRLREGNWASVRLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Apoptosis regulator Bcl-W
publication title Solution structure of human BCL-w: modulation of ligand binding by the C-terminal helix
pubmed doi rcsb
source organism Homo sapiens
total genus 47
structure length 178
sequence length 178
ec nomenclature
pdb deposition date 2002-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
A PF02180 BH4 Bcl-2 homology region 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 1mk3A00
2A5YA 2VOFA 3D7VA 1G5JA 1LXLA 2M5BA 5FDOA 2XPXA 3IHDA 4S0PA 5KTGA 1YSGA 3IIGA 2O21A 4U2UA 2O2NA 1Q59A 4QVXA 5IF4A 2YV6A 1DDBA 3KJ0A 5FMIA 4ZIHA 2VOHA 3KZ0A 4WMRA 2O22A 1YSNA 1TY4A 1F16A 4ZBFA 2RODA 3I1HA 1PQ0A 1R2GA 2BZWA 1G5MA 3IIHA 2NLAA 5FC4A 4K5BC 1MAZA 4OQ5A 2VOIA 1PQ1A 1MK3A 4ZIEA 2W3LA 4ZIGA 2V6QA 2WH6A 2JCNA 4HW3A 2ABOA 2O2MA 1BXLA 2PQKA 4BD8A 1R2IA 4ZIFA 3WIXA 2MHSA 2IMTA 4BD2A 3CVAX 1R2HA 1O0LA 4YJ4A 4G35A 4ZIIA 1ZY3A 2B48A 3IHCA 3KJ1A 3KJ2A 5KU9A 5C3FA 2IMSA 2KBWA 4BDUA 2KUAA 1AF3A 1GJHA 5JSBA 4HW2A 2K7WA 2ME8A 2MEJA 2ROCA 3BL2A 4ZBIA 2JM6B 4ZEQA 2VM6A 4BD6A 3ILCA 2O2FA 2BIDA 4QNQA 5FDRA 4S0OA 4B4SA 1OHUA 3MQPA 2NL9A 1YSWA 2XA0A 2LR1A 2VOGA 3QBRA 4BD7A 1YSIA 3WIYA 4U2VA 1R2EA 3MK8A 3DVUA 1K3KA 4YK9A 4OQ6A 5C6HA 3PK1A 3IHEA 1WSXA 3IO9A 4BPIA 1R2DA 4HW4A 4OYDA 5IEZA 4MI8A 4BPJA
chains in the Genus database with same CATH superfamily
2A5YA 2VOFA 3D7VA 1G5JA 1LXLA 2M5BA 5FDOA 2XPXA 3IHDA 4S0PA 5KTGA 1YSGA 3IIGA 2O21A 4U2UA 2O2NA 1Q59A 4QVXA 5IF4A 2YV6A 1DDBA 3KJ0A 5FMIA 4ZIHA 2VOHA 3KZ0A 4WMRA 2O22A 1YSNA 1TY4A 1F16A 4ZBFA 2RODA 4D2LA 3I1HA 1PQ0A 1R2GA 2BZWA 1G5MA 3IIHA 4D2MA 2NLAA 5FC4A 4K5BC 1MAZA 4OQ5A 2VOIA 1PQ1A 1MK3A 4ZIEA 2W3LA 4UF3A 4ZIGA 2V6QA 2WH6A 2JCNA 4HW3A 2ABOA 2O2MA 1BXLA 2PQKA 4BD8A 1R2IA 4ZIFA 2K36A 3WIXA 2MHSA 2VVXA 2IMTA 4BD2A 3CVAX 4M0SA 2VVYA 1R2HA 1O0LA 4YJ4A 4G35A 4ZIIA 2VVWA 1ZY3A 2B48A 3IHCA 3KJ1A 3KJ2A 5KU9A 5C3FA 2IMSA 4LQKA 4UF2A 2KBWA 4BDUA 2KUAA 1AF3A 1GJHA 2JBXA 5JSBA 4HW2A 2K7WA 2ME8A 2MEJA 2ROCA 3BL2A 4ZBIA 2JM6B 4ZEQA 2VM6A 4UF1A 4BD6A 2I39A 2O2FA 3ILCA 2BIDA 4QNQA 5FDRA 4S0OA 2O42A 2JBYA 4B4SA 1OHUA 3MQPA 2NL9A 1YSWA 2XA0A 2LR1A 2VOGA 3QBRA 4BD7A 1YSIA 3WIYA 4BBDA 4U2VA 1R2EA 3MK8A 3DVUA 4BBBA 1K3KA 2UXEA 4YK9A 4OQ6A 5C6HA 2VTYA 3PK1A 3JRVA 3IHEA 1WSXA 3IO9A 4BPIA 1R2DA 4HW4A 4OYDA 5IEZA 4MI8A 4BPJA 4BBCA
chains in the Genus database with same CATH topology
2A5YA 2VOFA 3D7VA 1G5JA 1LXLA 2M5BA 5FDOA 2XPXA 3IHDA 4S0PA 5KTGA 1YSGA 3IIGA 2O21A 4U2UA 2O2NA 1Q59A 4QVXA 5IF4A 2YV6A 1DDBA 3KJ0A 5FMIA 4ZIHA 2VOHA 3KZ0A 4WMRA 2O22A 1YSNA 1TY4A 1F16A 4ZBFA 2RODA 3I1HA 1PQ0A 1R2GA 2BZWA 1G5MA 3IIHA 2NLAA 5FC4A 4K5BC 1MAZA 4OQ5A 2VOIA 1PQ1A 1MK3A 4ZIEA 2W3LA 4ZIGA 2V6QA 2WH6A 2JCNA 4HW3A 2ABOA 2O2MA 1BXLA 2PQKA 4BD8A 1R2IA 4ZIFA 3WIXA 2MHSA 2IMTA 4BD2A 3CVAX 1R2HA 1O0LA 4YJ4A 4G35A 4ZIIA 1ZY3A 2B48A 3IHCA 3KJ1A 3KJ2A 5KU9A 5C3FA 2IMSA 2KBWA 4BDUA 2KUAA 1AF3A 1GJHA 5JSBA 4HW2A 2K7WA 2ME8A 2MEJA 2ROCA 3BL2A 4ZBIA 2JM6B 4ZEQA 2VM6A 4BD6A 3ILCA 2O2FA 2BIDA 4QNQA 5FDRA 4S0OA 4B4SA 1OHUA 3MQPA 2NL9A 1YSWA 2XA0A 2LR1A 2VOGA 3QBRA 4BD7A 1YSIA 3WIYA 4U2VA 1R2EA 3MK8A 3DVUA 1K3KA 4YK9A 4OQ6A 5C6HA 3PK1A 3IHEA 1WSXA 3IO9A 4BPIA 1R2DA 4HW4A 4OYDA 5IEZA 4MI8A 4BPJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A5Y A;  2VOF A;  3D7V A;  1G5J A;  1LXL A;  2M5B A;  5FDO A;  2XPX A;  3IHD A;  4S0P A;  5KTG A;  1YSG A;  3IIG A;  2O21 A;  4U2U A;  2O2N A;  1Q59 A;  4QVX A;  5IF4 A;  2YV6 A;  1DDB A;  3KJ0 A;  5FMI A;  4ZIH A;  2VOH A;  3KZ0 A;  4WMR A;  2O22 A;  1YSN A;  1TY4 A;  1F16 A;  4ZBF A;  2ROD A;  3I1H A;  1PQ0 A;  1R2G A;  2BZW A;  1G5M A;  3IIH A;  2NLA A;  5FC4 A;  4K5B C;  1MAZ A;  4OQ5 A;  2VOI A;  1PQ1 A;  1MK3 A;  4ZIE A;  2W3L A;  4ZIG A;  2V6Q A;  2WH6 A;  2JCN A;  4HW3 A;  2ABO A;  2O2M A;  1BXL A;  2PQK A;  4BD8 A;  1R2I A;  4ZIF A;  3WIX A;  2MHS A;  2IMT A;  4BD2 A;  3CVA X;  1R2H A;  1O0L A;  4YJ4 A;  4G35 A;  4ZII A;  1ZY3 A;  2B48 A;  3IHC A;  3KJ1 A;  3KJ2 A;  5KU9 A;  5C3F A;  2IMS A;  2KBW A;  4BDU A;  2KUA A;  1AF3 A;  1GJH A;  5JSB A;  4HW2 A;  2K7W A;  2ME8 A;  2MEJ A;  2ROC A;  3BL2 A;  4ZBI A;  2JM6 B;  4ZEQ A;  2VM6 A;  4BD6 A;  3ILC A;  2O2F A;  2BID A;  4QNQ A;  5FDR A;  4S0O A;  4B4S A;  1OHU A;  3MQP A;  2NL9 A;  1YSW A;  2XA0 A;  2LR1 A;  2VOG A;  3QBR A;  4BD7 A;  1YSI A;  3WIY A;  4U2V A;  1R2E A;  3MK8 A;  3DVU A;  1K3K A;  4YK9 A;  4OQ6 A;  5C6H A;  3PK1 A;  3IHE A;  1WSX A;  3IO9 A;  4BPI A;  1R2D A;  4HW4 A;  4OYD A;  5IEZ A;  4MI8 A;  4BPJ A; 
#chains in the Genus database with same CATH topology
 2A5Y A;  2VOF A;  3D7V A;  1G5J A;  1LXL A;  2M5B A;  5FDO A;  2XPX A;  3IHD A;  4S0P A;  5KTG A;  1YSG A;  3IIG A;  2O21 A;  4U2U A;  2O2N A;  1Q59 A;  4QVX A;  5IF4 A;  2YV6 A;  1DDB A;  3KJ0 A;  5FMI A;  4ZIH A;  2VOH A;  3KZ0 A;  4WMR A;  2O22 A;  1YSN A;  1TY4 A;  1F16 A;  4ZBF A;  2ROD A;  4D2L A;  3I1H A;  1PQ0 A;  1R2G A;  2BZW A;  1G5M A;  3IIH A;  4D2M A;  2NLA A;  5FC4 A;  4K5B C;  1MAZ A;  4OQ5 A;  2VOI A;  1PQ1 A;  1MK3 A;  4ZIE A;  2W3L A;  4UF3 A;  4ZIG A;  2V6Q A;  2WH6 A;  2JCN A;  4HW3 A;  2ABO A;  2O2M A;  1BXL A;  2PQK A;  4BD8 A;  1R2I A;  4ZIF A;  2K36 A;  3WIX A;  2MHS A;  2VVX A;  2IMT A;  4BD2 A;  3CVA X;  4M0S A;  2VVY A;  1R2H A;  1O0L A;  4YJ4 A;  4G35 A;  4ZII A;  2VVW A;  1ZY3 A;  2B48 A;  3IHC A;  3KJ1 A;  3KJ2 A;  5KU9 A;  5C3F A;  2IMS A;  4LQK A;  4UF2 A;  2KBW A;  4BDU A;  2KUA A;  1AF3 A;  1GJH A;  2JBX A;  5JSB A;  4HW2 A;  2K7W A;  2ME8 A;  2MEJ A;  2ROC A;  3BL2 A;  4ZBI A;  2JM6 B;  4ZEQ A;  2VM6 A;  4UF1 A;  4BD6 A;  2I39 A;  2O2F A;  3ILC A;  2BID A;  4QNQ A;  5FDR A;  4S0O A;  2O42 A;  2JBY A;  4B4S A;  1OHU A;  3MQP A;  2NL9 A;  1YSW A;  2XA0 A;  2LR1 A;  2VOG A;  3QBR A;  4BD7 A;  1YSI A;  3WIY A;  4BBD A;  4U2V A;  1R2E A;  3MK8 A;  3DVU A;  4BBB A;  1K3K A;  2UXE A;  4YK9 A;  4OQ6 A;  5C6H A;  2VTY A;  3PK1 A;  3JRV A;  3IHE A;  1WSX A;  3IO9 A;  4BPI A;  1R2D A;  4HW4 A;  4OYD A;  5IEZ A;  4MI8 A;  4BPJ A;  4BBC A; 
#chains in the Genus database with same CATH homology
 2A5Y A;  2VOF A;  3D7V A;  1G5J A;  1LXL A;  2M5B A;  5FDO A;  2XPX A;  3IHD A;  4S0P A;  5KTG A;  1YSG A;  3IIG A;  2O21 A;  4U2U A;  2O2N A;  1Q59 A;  4QVX A;  5IF4 A;  2YV6 A;  1DDB A;  3KJ0 A;  5FMI A;  4ZIH A;  2VOH A;  3KZ0 A;  4WMR A;  2O22 A;  1YSN A;  1TY4 A;  1F16 A;  4ZBF A;  2ROD A;  3I1H A;  1PQ0 A;  1R2G A;  2BZW A;  1G5M A;  3IIH A;  2NLA A;  5FC4 A;  4K5B C;  1MAZ A;  4OQ5 A;  2VOI A;  1PQ1 A;  1MK3 A;  4ZIE A;  2W3L A;  4ZIG A;  2V6Q A;  2WH6 A;  2JCN A;  4HW3 A;  2ABO A;  2O2M A;  1BXL A;  2PQK A;  4BD8 A;  1R2I A;  4ZIF A;  3WIX A;  2MHS A;  2IMT A;  4BD2 A;  3CVA X;  1R2H A;  1O0L A;  4YJ4 A;  4G35 A;  4ZII A;  1ZY3 A;  2B48 A;  3IHC A;  3KJ1 A;  3KJ2 A;  5KU9 A;  5C3F A;  2IMS A;  2KBW A;  4BDU A;  2KUA A;  1AF3 A;  1GJH A;  5JSB A;  4HW2 A;  2K7W A;  2ME8 A;  2MEJ A;  2ROC A;  3BL2 A;  4ZBI A;  2JM6 B;  4ZEQ A;  2VM6 A;  4BD6 A;  3ILC A;  2O2F A;  2BID A;  4QNQ A;  5FDR A;  4S0O A;  4B4S A;  1OHU A;  3MQP A;  2NL9 A;  1YSW A;  2XA0 A;  2LR1 A;  2VOG A;  3QBR A;  4BD7 A;  1YSI A;  3WIY A;  4U2V A;  1R2E A;  3MK8 A;  3DVU A;  1K3K A;  4YK9 A;  4OQ6 A;  5C6H A;  3PK1 A;  3IHE A;  1WSX A;  3IO9 A;  4BPI A;  1R2D A;  4HW4 A;  4OYD A;  5IEZ A;  4MI8 A;  4BPJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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