1MM8A

Crystal structure of tn5 transposase complexed with me dna
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
473
structure length
455
Chain Sequence
ALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQLRESFTPQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Evidence for "unseen" Transposase--DNA contacts
pubmed doi rcsb
molecule keywords ME DNA transferred strand
molecule tags Transcription/dna
source organism Escherichia coli
total genus 150
structure length 455
sequence length 473
ec nomenclature
pdb deposition date 2002-09-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 1mm8A01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 1mm8A03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 1mm8A02
1B7EA 1MM8A 3ECPA 1MUHA 4DM0A 1MUSA
chains in the Genus database with same CATH superfamily
1VZSA 3LU7A 3NVMA 2XVWA 2DG5A 2E0YA 4WA6B 3WHQA 4F5SA 3B9MA 5ID7A 1GNIA 1MA9A 1IJGA 2EFHA 2AJEA 1MM8A 4TQ0A 3NVIA 4OTTA 5GHKA 4OT2A 1E7CA 3LU8A 2LXTA 2LQIA 3MHHB 3GQUA 4ZUXV 1E7IA 5GINA 4DM0A 3B9LA 2OT3A 4FK5B 4J2VA 5IIXA 1TXUA 4FIPB 1E7BA 2BXAA 2BXNA 2JUHA 2NNWA 2Z8IA 4D7XA 2E0XA 3G9KD 1HK2A 2XW1A 2ROHA 2DYMA 5D7GA 2BXOA 3CX9A 1HK5A 3A73A 4IW2A 4K2CA 3GA9L 3V09A 5IJFA 1KDXA 2VDBA 4GDXA 3FWCC 4K71A 4N0FD 1BKEA 2BXLA 2DYOA 4HGKA 1JNBA 5DBYA 1MIYA 3SIUB 2BX8A 5IIHA 1UORA 3A75A 1GNJA 4I9OA 2BXHA 4PO0A 4Z9OA 4BKEA 2BXBA 4F5VA 3H37A 4JK4A 4DHXB 4Z69A 1E7FA 4LUFA 3H3AA 1E7EA 2LOQA 5GIPA 1H9ZA 1KXPD 2EFCA 4ZBRA 2QHBA 3NMUA 2V36A 1LOTA 2XW0A 4OR0A 3V08A 5B5TA 1NT2B 2BXKA 3JQZA 4OTUA 5ID9A 1MIWA 1B7EA 1E7AA 2XSIA 3ICXA 4N0UD 4M70B 2BXFA 4ZBQA 2XMOA 4F5TA 1O9XA 1N5UA 3GQXA 3JRYA 1HK4A 2XVQA 4LA0A 4ZBKA 3M99C 1KW2A 4EMXA 2I30A 2Z8JA 1MUSA 1VFIA 5BPKA 4G04A 5DQFA 5FUOA 1J78A 4GDLB 2XVUA 3V03A 1SB0A 4F5UA 3PLAA 4NAWB 1MUHA 2NQOA 2BXMA 4BY9C 2BXIA 3LU6A 2I2ZA 2BXGA 2OZBB 4L8UA 2EFDA 4FJCB 2BXPA 2KWFA 4G01A 4L9QA 1HK1A 5IJEA 5GIOA 4MBEC 3SQJA 2DBXA 3UIVA 3NVKA 2K0NA 1TF0A 2CKXA 2AGHB 4LUHA 4TQ1A 2EFEA 1FOUA 1HA2A 3VQIA 3FNMA 4G03A 1H5WA 5IIUA 3KJLA 2GUTA 4ZC6A 4LB9A 4ZCGA 2DBWA 3FWBC 4LB2A 3W1SA 1E7GA 2LQHA 5IFOA 3WHRA 4L9KA 4HGMB 2VUEA 4W4UB 4E99A 5IJ5A 1HK3A 1LNSA 2XVVA 1J7EA 1BJ5A 4IW1A 4N3ZA 2DBUA 4C31B 3KIKA 2QMCA 3WHSA 1MIVA 2YDFA 2QM6A 1BM0A 1AO6A 4GG2A 3MHSB 1E78A 2Z8KA 2BXCA 1E7HA 3TDLA 2BXDA 4GDKB 2KBZA 4S1YA 5HOZA 3SIVB 2VUFA 2LXSA 2BXQA 2BXEA 3ECPA 3BPJA
chains in the Genus database with same CATH topology
1B7EA 1MM8A 3ECPA 1MUHA 4DM0A 1MUSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B7E A;  1MM8 A;  3ECP A;  1MUH A;  4DM0 A;  1MUS A; 
#chains in the Genus database with same CATH topology
 1VZS A;  3LU7 A;  3NVM A;  2XVW A;  2DG5 A;  2E0Y A;  4WA6 B;  3WHQ A;  4F5S A;  3B9M A;  5ID7 A;  1GNI A;  1MA9 A;  1IJG A;  2EFH A;  2AJE A;  1MM8 A;  4TQ0 A;  3NVI A;  4OTT A;  5GHK A;  4OT2 A;  1E7C A;  3LU8 A;  2LXT A;  2LQI A;  3MHH B;  3GQU A;  4ZUX V;  1E7I A;  5GIN A;  4DM0 A;  3B9L A;  2OT3 A;  4FK5 B;  4J2V A;  5IIX A;  1TXU A;  4FIP B;  1E7B A;  2BXA A;  2BXN A;  2JUH A;  2NNW A;  2Z8I A;  4D7X A;  2E0X A;  3G9K D;  1HK2 A;  2XW1 A;  2ROH A;  2DYM A;  5D7G A;  2BXO A;  3CX9 A;  1HK5 A;  3A73 A;  4IW2 A;  4K2C A;  3GA9 L;  3V09 A;  5IJF A;  1KDX A;  2VDB A;  4GDX A;  3FWC C;  4K71 A;  4N0F D;  1BKE A;  2BXL A;  2DYO A;  4HGK A;  1JNB A;  5DBY A;  1MIY A;  3SIU B;  2BX8 A;  5IIH A;  1UOR A;  3A75 A;  1GNJ A;  4I9O A;  2BXH A;  4PO0 A;  4Z9O A;  4BKE A;  2BXB A;  4F5V A;  3H37 A;  4JK4 A;  4DHX B;  4Z69 A;  1E7F A;  4LUF A;  3H3A A;  1E7E A;  2LOQ A;  5GIP A;  1H9Z A;  1KXP D;  2EFC A;  4ZBR A;  2QHB A;  3NMU A;  2V36 A;  1LOT A;  2XW0 A;  4OR0 A;  3V08 A;  5B5T A;  1NT2 B;  2BXK A;  3JQZ A;  4OTU A;  5ID9 A;  1MIW A;  1B7E A;  1E7A A;  2XSI A;  3ICX A;  4N0U D;  4M70 B;  2BXF A;  4ZBQ A;  2XMO A;  4F5T A;  1O9X A;  1N5U A;  3GQX A;  3JRY A;  1HK4 A;  2XVQ A;  4LA0 A;  4ZBK A;  3M99 C;  1KW2 A;  4EMX A;  2I30 A;  2Z8J A;  1MUS A;  1VFI A;  5BPK A;  4G04 A;  5DQF A;  5FUO A;  1J78 A;  4GDL B;  2XVU A;  3V03 A;  1SB0 A;  4F5U A;  3PLA A;  4NAW B;  1MUH A;  2NQO A;  2BXM A;  4BY9 C;  2BXI A;  3LU6 A;  2I2Z A;  2BXG A;  2OZB B;  4L8U A;  2EFD A;  4FJC B;  2BXP A;  2KWF A;  4G01 A;  4L9Q A;  1HK1 A;  5IJE A;  5GIO A;  4MBE C;  3SQJ A;  2DBX A;  3UIV A;  3NVK A;  2K0N A;  1TF0 A;  2CKX A;  2AGH B;  4LUH A;  4TQ1 A;  2EFE A;  1FOU A;  1HA2 A;  3VQI A;  3FNM A;  4G03 A;  1H5W A;  5IIU A;  3KJL A;  2GUT A;  4ZC6 A;  4LB9 A;  4ZCG A;  2DBW A;  3FWB C;  4LB2 A;  3W1S A;  1E7G A;  2LQH A;  5IFO A;  3WHR A;  4L9K A;  4HGM B;  2VUE A;  4W4U B;  4E99 A;  5IJ5 A;  1HK3 A;  1LNS A;  2XVV A;  1J7E A;  1BJ5 A;  4IW1 A;  4N3Z A;  2DBU A;  4C31 B;  3KIK A;  2QMC A;  3WHS A;  1MIV A;  2YDF A;  2QM6 A;  1BM0 A;  1AO6 A;  4GG2 A;  3MHS B;  1E78 A;  2Z8K A;  2BXC A;  1E7H A;  3TDL A;  2BXD A;  4GDK B;  2KBZ A;  4S1Y A;  5HOZ A;  3SIV B;  2VUF A;  2LXS A;  2BXQ A;  2BXE A;  3ECP A;  3BPJ A; 
#chains in the Genus database with same CATH homology
 1B7E A;  1MM8 A;  3ECP A;  1MUH A;  4DM0 A;  1MUS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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